RNA–Protein interactions for RNA: ENST00000447480.5

TRIM4-204, Transcript of tripartite motif containing 4, humanhuman

TSL 3

Gene TRIM4, Length 639 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-204ENST00000447480 AEBP2Q6ZN18 517 aaPredicted RBP21.65■■□□□ 1.06
TRIM4-204ENST00000447480 CHIC1Q5VXU3 224 aa20.93■□□□□ 0.94
TRIM4-204ENST00000447480 PHF23Q9BUL5 403 aaPredicted RBP18.41■□□□□ 0.54
TRIM4-204ENST00000447480 SENP3Q9H4L4 574 aaPredicted RBP18.36■□□□□ 0.53
TRIM4-204ENST00000447480 FOXD1Q16676 465 aa17.09■□□□□ 0.33
TRIM4-204ENST00000447480 PLPPR3Q6T4P5 718 aa16.9■□□□□ 0.3
TRIM4-204ENST00000447480 NISCHQ9Y2I1 1504 aa16.58■□□□□ 0.24
TRIM4-204ENST00000447480 PPP6R1Q9UPN7 881 aa16.32■□□□□ 0.2
TRIM4-204ENST00000447480 ADRA2BP18089 450 aa16.3■□□□□ 0.2
TRIM4-204ENST00000447480 PIAS4Q8N2W9 510 aaPredicted RBP16.08■□□□□ 0.16
TRIM4-204ENST00000447480 MSH5O43196 834 aa15.8■□□□□ 0.12
TRIM4-204ENST00000447480 PPP4R3CPQ6ZMV5 832 aa14.89□□□□□ -0.03
TRIM4-204ENST00000447480 MAPK8IP2Q13387 824 aaPredicted RBP14.85□□□□□ -0.03
TRIM4-204ENST00000447480 SCAF1Q9H7N4 1312 aaKnown RBP14.85□□□□□ -0.03
TRIM4-204ENST00000447480 CCDC180Q9P1Z9 1646 aa14.79□□□□□ -0.04
TRIM4-204ENST00000447480 POTEDQ86YR6 584 aa14.75□□□□□ -0.05
TRIM4-204ENST00000447480 DMRT2Q9Y5R5 561 aa14.64□□□□□ -0.07
TRIM4-204ENST00000447480 CNKSR2Q8WXI2 1034 aa14.49□□□□□ -0.09
TRIM4-204ENST00000447480 NCBP3Q53F19 620 aaKnown RBP14.42□□□□□ -0.1
TRIM4-204ENST00000447480 KCNA4P22459 653 aa14.36□□□□□ -0.11
TRIM4-204ENST00000447480 HOXD11P31277 338 aaPredicted RBP14.25□□□□□ -0.13
TRIM4-204ENST00000447480 RNF216Q9NWF9 866 aaPredicted RBP14.25□□□□□ -0.13
TRIM4-204ENST00000447480 NPM3O75607 178 aaKnown RBP14.24□□□□□ -0.13
TRIM4-204ENST00000447480 DCAF8L1A6NGE4 600 aa14.05□□□□□ -0.16
TRIM4-204ENST00000447480 ABCC9O60706 1549 aa14.03□□□□□ -0.16
TRIM4-204ENST00000447480 ZCCHC6Q5VYS8 1495 aaKnown RBP13.86□□□□□ -0.19
TRIM4-204ENST00000447480 MYO15BQ96JP2 1530 aa13.85□□□□□ -0.19
TRIM4-204ENST00000447480 DCAF1Q9Y4B6 1507 aa13.85□□□□□ -0.19
TRIM4-204ENST00000447480 NACADO15069 1562 aa13.83□□□□□ -0.19
TRIM4-204ENST00000447480 RB1CC1Q8TDY2 1594 aa13.79□□□□□ -0.2
TRIM4-204ENST00000447480 DNAJC5BQ9UF47 199 aa13.79□□□□□ -0.2
TRIM4-204ENST00000447480 DCAF8L2P0C7V8 631 aa13.69□□□□□ -0.22
TRIM4-204ENST00000447480 SLC4A1APQ9BWU0 796 aaKnown RBP13.62□□□□□ -0.23
TRIM4-204ENST00000447480 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.6□□□□□ -0.232e-7■■■■□ 20.2
TRIM4-204ENST00000447480 RNF39Q9H2S5 420 aa13.54□□□□□ -0.24
TRIM4-204ENST00000447480 SLC4A2P04920 1241 aa13.49□□□□□ -0.25
TRIM4-204ENST00000447480 U3KPZ7 1027 aaPredicted RBP13.37□□□□□ -0.27
TRIM4-204ENST00000447480 UNC13AQ9UPW8 1703 aa13.36□□□□□ -0.27
TRIM4-204ENST00000447480 SHROOM4Q9ULL8 1493 aa13.36□□□□□ -0.27
TRIM4-204ENST00000447480 C1QBPQ07021 282 aaKnown RBP13.35□□□□□ -0.27
TRIM4-204ENST00000447480 CACNB1Q02641 598 aaPredicted RBP13.34□□□□□ -0.27
TRIM4-204ENST00000447480 SCRIBQ14160 1630 aa13.33□□□□□ -0.28
TRIM4-204ENST00000447480 FOXD4L1Q9NU39 408 aa13.23□□□□□ -0.29
TRIM4-204ENST00000447480 ZBTB22O15209 634 aa13.22□□□□□ -0.29
TRIM4-204ENST00000447480 BICRAQ9NZM4 1560 aa13.17□□□□□ -0.3
TRIM4-204ENST00000447480 MYCNP04198 464 aaPredicted RBP13.14□□□□□ -0.31
TRIM4-204ENST00000447480 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.09□□□□□ -0.31
TRIM4-204ENST00000447480 HNRNPUL2Q1KMD3 747 aaKnown RBP13.09□□□□□ -0.31
TRIM4-204ENST00000447480 PABPN1Q86U42 306 aaKnown RBP eCLIP13.07□□□□□ -0.32
TRIM4-204ENST00000447480 SPINK5Q9NQ38 1064 aaPredicted RBP13.07□□□□□ -0.32
TRIM4-204ENST00000447480 EHMT2Q96KQ7 1210 aa13.05□□□□□ -0.32
TRIM4-204ENST00000447480 SAMD1Q6SPF0 538 aaPredicted RBP13.04□□□□□ -0.32
TRIM4-204ENST00000447480 CAPN15O75808 1086 aa13.01□□□□□ -0.33
TRIM4-204ENST00000447480 APLP2Q06481 763 aa12.99□□□□□ -0.33
TRIM4-204ENST00000447480 CSRNP3Q8WYN3 585 aa12.96□□□□□ -0.33
TRIM4-204ENST00000447480 BAZ1AQ9NRL2 1556 aaPredicted RBP12.93□□□□□ -0.34
TRIM4-204ENST00000447480 TRHP20396 242 aaPredicted RBP12.91□□□□□ -0.34
TRIM4-204ENST00000447480 EIF4G1Q04637 1599 aaKnown RBP12.9□□□□□ -0.35
TRIM4-204ENST00000447480 ZNF219Q9P2Y4 722 aaPredicted RBP12.86□□□□□ -0.35
TRIM4-204ENST00000447480 ATF5Q9Y2D1 282 aaPredicted RBP12.85□□□□□ -0.35
TRIM4-204ENST00000447480 SMARCA4P51532 1647 aa12.83□□□□□ -0.36
TRIM4-204ENST00000447480 DSG3P32926 999 aa12.82□□□□□ -0.36
TRIM4-204ENST00000447480 SMARCA2P51531 1590 aa12.8□□□□□ -0.36
TRIM4-204ENST00000447480 ABCB7O75027 752 aa12.77□□□□□ -0.37
TRIM4-204ENST00000447480 CC2D2AQ9P2K1 1620 aa12.77□□□□□ -0.37
TRIM4-204ENST00000447480 ATXN8OSP0DMR3 200 aa12.76□□□□□ -0.37
TRIM4-204ENST00000447480 PEG3Q9GZU2 1588 aa12.75□□□□□ -0.37
TRIM4-204ENST00000447480 CECR2Q9BXF3 1484 aa12.74□□□□□ -0.37
TRIM4-204ENST00000447480 HMGXB3Q12766 1538 aa12.7□□□□□ -0.38
TRIM4-204ENST00000447480 MROH2BQ7Z745 1585 aa12.69□□□□□ -0.38
TRIM4-204ENST00000447480 NCAPD3P42695 1498 aa12.68□□□□□ -0.38
TRIM4-204ENST00000447480 ATAD2BQ9ULI0 1458 aa12.67□□□□□ -0.38
TRIM4-204ENST00000447480 POLA2Q14181 598 aa12.65□□□□□ -0.38
TRIM4-204ENST00000447480 BAZ1BQ9UIG0 1483 aaKnown RBP12.65□□□□□ -0.38
TRIM4-204ENST00000447480 RSF1Q96T23 1441 aaPredicted RBP12.64□□□□□ -0.39
TRIM4-204ENST00000447480 WIZO95785 1651 aa12.59□□□□□ -0.39
TRIM4-204ENST00000447480 TOP2AP11388 1531 aaKnown RBP12.57□□□□□ -0.4
TRIM4-204ENST00000447480 HRCP23327 699 aa12.49□□□□□ -0.41
TRIM4-204ENST00000447480 SUPT5HO00267 1087 aaKnown RBP12.46□□□□□ -0.41
TRIM4-204ENST00000447480 ZBTB12Q9Y330 459 aaPredicted RBP12.39□□□□□ -0.43
TRIM4-204ENST00000447480 LAMC3Q9Y6N6 1575 aa12.39□□□□□ -0.43
TRIM4-204ENST00000447480 PELP1Q8IZL8 1130 aaKnown RBP12.37□□□□□ -0.43
TRIM4-204ENST00000447480 PRDM2Q13029 1718 aa12.35□□□□□ -0.43
TRIM4-204ENST00000447480 CCDC88BA6NC98 1476 aa12.33□□□□□ -0.44
TRIM4-204ENST00000447480 CADPSQ9ULU8 1353 aa12.31□□□□□ -0.44
TRIM4-204ENST00000447480 PDS5BQ9NTI5 1447 aa12.3□□□□□ -0.44
TRIM4-204ENST00000447480 CFTRP13569 1480 aa12.28□□□□□ -0.44
TRIM4-204ENST00000447480 FBLN2P98095 1184 aa12.28□□□□□ -0.44
TRIM4-204ENST00000447480 MKRN4PQ13434 485 aaPredicted RBP12.27□□□□□ -0.45
TRIM4-204ENST00000447480 OSCARQ8IYS5 282 aa12.24□□□□□ -0.45
TRIM4-204ENST00000447480 ERCC6Q03468 1493 aa12.21□□□□□ -0.45
TRIM4-204ENST00000447480 RBM42Q9BTD8 480 aaKnown RBP12.2□□□□□ -0.46
TRIM4-204ENST00000447480 CEP164Q9UPV0 1460 aa12.18□□□□□ -0.46
TRIM4-204ENST00000447480 ABCC8Q09428 1581 aa12.18□□□□□ -0.46
TRIM4-204ENST00000447480 FANCD2Q9BXW9 1451 aa12.16□□□□□ -0.46
TRIM4-204ENST00000447480 NESP48681 1621 aa12.15□□□□□ -0.47
TRIM4-204ENST00000447480 ZEB1P37275 1124 aaPredicted RBP12.14□□□□□ -0.47
TRIM4-204ENST00000447480 KIF21AQ7Z4S6 1674 aa12.13□□□□□ -0.47
TRIM4-204ENST00000447480 MRC2Q9UBG0 1479 aa12.09□□□□□ -0.47
TRIM4-204ENST00000447480 SPDYE2BA6NHP3 402 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms