RNA–Protein interactions for RNA: ENST00000446876.1

HDAC4-204, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 554 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-204ENST00000446876 NISCHQ9Y2I1 1504 aa36.23■■■■□ 3.39
HDAC4-204ENST00000446876 CCDC180Q9P1Z9 1646 aa32.25■■■□□ 2.75
HDAC4-204ENST00000446876 ABCC9O60706 1549 aa31.64■■■□□ 2.66
HDAC4-204ENST00000446876 RB1CC1Q8TDY2 1594 aa30.35■■■□□ 2.45
HDAC4-204ENST00000446876 DCAF8L2P0C7V8 631 aa30.29■■■□□ 2.44
HDAC4-204ENST00000446876 NACADO15069 1562 aa30.28■■■□□ 2.44
HDAC4-204ENST00000446876 ZCCHC6Q5VYS8 1495 aaKnown RBP30.18■■■□□ 2.42
HDAC4-204ENST00000446876 MYO15BQ96JP2 1530 aa30.03■■■□□ 2.4
HDAC4-204ENST00000446876 DCAF1Q9Y4B6 1507 aa29.91■■■□□ 2.38
HDAC4-204ENST00000446876 UNC13AQ9UPW8 1703 aa29.79■■■□□ 2.36
HDAC4-204ENST00000446876 PABPN1Q86U42 306 aaKnown RBP eCLIP29.54■■■□□ 2.32
HDAC4-204ENST00000446876 SCRIBQ14160 1630 aa29.49■■■□□ 2.31
HDAC4-204ENST00000446876 BICRAQ9NZM4 1560 aa29.49■■■□□ 2.31
HDAC4-204ENST00000446876 DNAJC5BQ9UF47 199 aa29.07■■■□□ 2.24
HDAC4-204ENST00000446876 SHROOM4Q9ULL8 1493 aa29.04■■■□□ 2.24
HDAC4-204ENST00000446876 EIF4G1Q04637 1599 aaKnown RBP28.7■■■□□ 2.18
HDAC4-204ENST00000446876 CC2D2AQ9P2K1 1620 aa28.61■■■□□ 2.17
HDAC4-204ENST00000446876 CECR2Q9BXF3 1484 aa28.39■■■□□ 2.13
HDAC4-204ENST00000446876 SMARCA4P51532 1647 aa28.16■■■□□ 2.1
HDAC4-204ENST00000446876 BAZ1AQ9NRL2 1556 aaPredicted RBP28.07■■■□□ 2.08
HDAC4-204ENST00000446876 ATAD2BQ9ULI0 1458 aa27.97■■■□□ 2.07
HDAC4-204ENST00000446876 MROH2BQ7Z745 1585 aa27.96■■■□□ 2.07
HDAC4-204ENST00000446876 SMARCA2P51531 1590 aa27.92■■■□□ 2.06
HDAC4-204ENST00000446876 NCAPD3P42695 1498 aa27.92■■■□□ 2.06
HDAC4-204ENST00000446876 PEG3Q9GZU2 1588 aa27.83■■■□□ 2.05
HDAC4-204ENST00000446876 HMGXB3Q12766 1538 aa27.82■■■□□ 2.04
HDAC4-204ENST00000446876 BAZ1BQ9UIG0 1483 aaKnown RBP27.76■■■□□ 2.03
HDAC4-204ENST00000446876 WIZO95785 1651 aa27.69■■■□□ 2.02
HDAC4-204ENST00000446876 RSF1Q96T23 1441 aaPredicted RBP27.58■■■□□ 2
HDAC4-204ENST00000446876 NESP48681 1621 aa27.38■■□□□ 1.97
HDAC4-204ENST00000446876 TOP2AP11388 1531 aaKnown RBP27.34■■□□□ 1.97
HDAC4-204ENST00000446876 ERCC6Q03468 1493 aa27.24■■□□□ 1.95
HDAC4-204ENST00000446876 LAMC3Q9Y6N6 1575 aa27.23■■□□□ 1.95
HDAC4-204ENST00000446876 CADPSQ9ULU8 1353 aa27.11■■□□□ 1.93
HDAC4-204ENST00000446876 KIF21AQ7Z4S6 1674 aa27.09■■□□□ 1.93
HDAC4-204ENST00000446876 CCDC88BA6NC98 1476 aa27.01■■□□□ 1.91
HDAC4-204ENST00000446876 PDS5BQ9NTI5 1447 aa27.01■■□□□ 1.91
HDAC4-204ENST00000446876 THOC2Q8NI27 1593 aaKnown RBP26.97■■□□□ 1.91
HDAC4-204ENST00000446876 CFTRP13569 1480 aa26.96■■□□□ 1.91
HDAC4-204ENST00000446876 CUX2O14529 1486 aa26.93■■□□□ 1.9
HDAC4-204ENST00000446876 SUPT5HO00267 1087 aaKnown RBP26.87■■□□□ 1.89
HDAC4-204ENST00000446876 PRDM2Q13029 1718 aa26.85■■□□□ 1.89
HDAC4-204ENST00000446876 FANCD2Q9BXW9 1451 aa26.85■■□□□ 1.89
HDAC4-204ENST00000446876 CEP164Q9UPV0 1460 aa26.81■■□□□ 1.88
HDAC4-204ENST00000446876 MRC2Q9UBG0 1479 aa26.79■■□□□ 1.88
HDAC4-204ENST00000446876 WDR62O43379 1518 aa26.71■■□□□ 1.87
HDAC4-204ENST00000446876 URB2Q14146 1524 aaKnown RBP26.61■■□□□ 1.85
HDAC4-204ENST00000446876 TOPBP1Q92547 1522 aa26.43■■□□□ 1.82
HDAC4-204ENST00000446876 DNMBPQ6XZF7 1577 aa26.39■■□□□ 1.82
HDAC4-204ENST00000446876 ABCC8Q09428 1581 aa26.33■■□□□ 1.81
HDAC4-204ENST00000446876 CUX1P39880 1505 aa26.24■■□□□ 1.79
HDAC4-204ENST00000446876 IFT140Q96RY7 1462 aa26.23■■□□□ 1.79
HDAC4-204ENST00000446876 POLA1P09884 1462 aaPredicted RBP26.2■■□□□ 1.78
HDAC4-204ENST00000446876 ZNF608Q9ULD9 1512 aaPredicted RBP26.19■■□□□ 1.78
HDAC4-204ENST00000446876 TARBP1Q13395 1621 aaKnown RBP26.16■■□□□ 1.78
HDAC4-204ENST00000446876 DNAJC5Q9H3Z4 198 aa26.14■■□□□ 1.78
HDAC4-204ENST00000446876 FGD5Q6ZNL6 1462 aa26.14■■□□□ 1.78
HDAC4-204ENST00000446876 RAD54L2Q9Y4B4 1467 aa26.11■■□□□ 1.77
HDAC4-204ENST00000446876 EIF4G3O43432 1585 aaKnown RBP26.1■■□□□ 1.77
HDAC4-204ENST00000446876 SOGA1O94964 1423 aa26.05■■□□□ 1.76
HDAC4-204ENST00000446876 SYNJ1O43426 1573 aa26.01■■□□□ 1.75
HDAC4-204ENST00000446876 AQRO60306 1485 aaKnown RBP eCLIP26.01■■□□□ 1.751e-7■■■□□ 16.7
HDAC4-204ENST00000446876 WRNQ14191 1432 aaPredicted RBP eCLIP26■■□□□ 1.75
HDAC4-204ENST00000446876 BIVM-ERCC5R4GMW8 1640 aa25.99■■□□□ 1.75
HDAC4-204ENST00000446876 WDR97A6NE52 1622 aa25.97■■□□□ 1.75
HDAC4-204ENST00000446876 TOP2BQ02880 1626 aa25.97■■□□□ 1.75
HDAC4-204ENST00000446876 TDRD9Q8NDG6 1382 aaKnown RBP25.95■■□□□ 1.74
HDAC4-204ENST00000446876 ABCA10Q8WWZ4 1543 aa25.85■■□□□ 1.73
HDAC4-204ENST00000446876 CHD1O14646 1710 aa25.82■■□□□ 1.72
HDAC4-204ENST00000446876 PBRM1Q86U86 1689 aa25.8■■□□□ 1.72
HDAC4-204ENST00000446876 ABCA5Q8WWZ7 1642 aa25.8■■□□□ 1.72
HDAC4-204ENST00000446876 SNAPC4Q5SXM2 1469 aa25.79■■□□□ 1.72
HDAC4-204ENST00000446876 OSCARQ8IYS5 282 aa25.77■■□□□ 1.72
HDAC4-204ENST00000446876 GAPVD1Q14C86 1478 aa25.77■■□□□ 1.72
HDAC4-204ENST00000446876 GRIN2BQ13224 1484 aa25.76■■□□□ 1.71
HDAC4-204ENST00000446876 MAGI1Q96QZ7 1491 aaPredicted RBP25.69■■□□□ 1.7
HDAC4-204ENST00000446876 FBLN2P98095 1184 aa25.69■■□□□ 1.7
HDAC4-204ENST00000446876 SYNJ2O15056 1496 aa25.6■■□□□ 1.69
HDAC4-204ENST00000446876 CHMP7Q8WUX9 453 aaPredicted RBP25.57■■□□□ 1.68
HDAC4-204ENST00000446876 ADAMTS12P58397 1594 aa25.56■■□□□ 1.68
HDAC4-204ENST00000446876 ERICH3Q5RHP9 1530 aa25.53■■□□□ 1.68
HDAC4-204ENST00000446876 RIMBP3CA6NJZ7 1639 aa25.48■■□□□ 1.67
HDAC4-204ENST00000446876 RIMBP3BA6NNM3 1639 aa25.48■■□□□ 1.67
HDAC4-204ENST00000446876 RIMBP3Q9UFD9 1639 aa25.48■■□□□ 1.67
HDAC4-204ENST00000446876 CLASP1Q7Z460 1538 aa25.47■■□□□ 1.67
HDAC4-204ENST00000446876 GRIN2AQ12879 1464 aa25.45■■□□□ 1.66
HDAC4-204ENST00000446876 FHAD1B1AJZ9 1412 aa25.45■■□□□ 1.66
HDAC4-204ENST00000446876 KIF27Q86VH2 1401 aa25.44■■□□□ 1.66
HDAC4-204ENST00000446876 ARHGEF11O15085 1522 aa25.43■■□□□ 1.66
HDAC4-204ENST00000446876 CEP170Q5SW79 1584 aa25.38■■□□□ 1.65
HDAC4-204ENST00000446876 IGF1RP08069 1367 aa25.34■■□□□ 1.65
HDAC4-204ENST00000446876 TRIM41Q8WV44 630 aa25.34■■□□□ 1.65
HDAC4-204ENST00000446876 NUP160Q12769 1436 aa25.32■■□□□ 1.64
HDAC4-204ENST00000446876 CUL7Q14999 1698 aa25.32■■□□□ 1.64
HDAC4-204ENST00000446876 RUSC2Q8N2Y8 1516 aa25.29■■□□□ 1.64
HDAC4-204ENST00000446876 ARAP1Q96P48 1450 aa25.25■■□□□ 1.63
HDAC4-204ENST00000446876 CARMIL1Q5VZK9 1371 aa25.19■■□□□ 1.62
HDAC4-204ENST00000446876 SHROOM2Q13796 1616 aa25.18■■□□□ 1.62
HDAC4-204ENST00000446876 ERCC6L2Q5T890 1561 aa25.18■■□□□ 1.62
HDAC4-204ENST00000446876 CYB5RLQ6IPT4 315 aa25.17■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms