RNA–Protein interactions for RNA: ENST00000446876.1

HDAC4-204, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 554 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-204ENST00000446876 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.91■□□□□ 0.143e-7■■■■■ 249
HDAC4-204ENST00000446876 SF3B1O75533 1304 aaKnown RBP eCLIP16.16■□□□□ 0.181e-6■■■■■ 138.4
HDAC4-204ENST00000446876 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.99□□□□□ -0.177e-7■■■■■ 59.5
HDAC4-204ENST00000446876 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.38■□□□□ 0.053e-12■■■■■ 46.3
HDAC4-204ENST00000446876 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.53□□□□□ -0.084e-6■■■■■ 42.6
HDAC4-204ENST00000446876 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.95■□□□□ 0.464e-9■■■■■ 42.5
HDAC4-204ENST00000446876 EIF4G2P78344 907 aaKnown RBP eCLIP20.75■□□□□ 0.917e-7■■■■■ 38
HDAC4-204ENST00000446876 DKC1O60832 514 aaKnown RBP eCLIP16.6■□□□□ 0.258e-7■■■■■ 36
HDAC4-204ENST00000446876 HNRNPKP61978 463 aaKnown RBP eCLIP14.82□□□□□ -0.041e-10■■■■■ 35.5
HDAC4-204ENST00000446876 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.95■□□□□ 0.465e-6■■■■■ 34.6
HDAC4-204ENST00000446876 SRSF7Q16629 238 aaKnown RBP eCLIP11.72□□□□□ -0.533e-10■■■■■ 33.8
HDAC4-204ENST00000446876 TARDBPQ13148 414 aaKnown RBP eCLIP14.67□□□□□ -0.061e-6■■■■□ 25.7
HDAC4-204ENST00000446876 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.69□□□□□ -0.065e-7■■■■□ 25.5
HDAC4-204ENST00000446876 HNRNPMP52272 730 aaKnown RBP eCLIP23.33■■□□□ 1.331e-6■■■■□ 25.2
HDAC4-204ENST00000446876 PTBP1P26599 531 aaKnown RBP eCLIP11.39□□□□□ -0.595e-7■■■■□ 24.7
HDAC4-204ENST00000446876 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.14■□□□□ 0.019e-8■■■■□ 23.7
HDAC4-204ENST00000446876 SFPQP23246 707 aaKnown RBP eCLIP16.49■□□□□ 0.234e-6■■■■□ 23.6
HDAC4-204ENST00000446876 EFTUD2Q15029 972 aaKnown RBP eCLIP14.27□□□□□ -0.133e-6■■■■□ 23.5
HDAC4-204ENST00000446876 KHSRPQ92945 711 aaKnown RBP eCLIP16.04■□□□□ 0.162e-6■■■■□ 23.4
HDAC4-204ENST00000446876 EWSR1Q01844 656 aaKnown RBP eCLIP10.86□□□□□ -0.676e-6■■■■□ 22.1
HDAC4-204ENST00000446876 RBM22Q9NW64 420 aaKnown RBP eCLIP14.95□□□□□ -0.027e-7■■■■□ 21.5
HDAC4-204ENST00000446876 PCBP2Q15366 365 aaKnown RBP eCLIP14.01□□□□□ -0.171e-6■■■■□ 21.4
HDAC4-204ENST00000446876 MATR3P43243 847 aaKnown RBP eCLIP16.24■□□□□ 0.192e-6■■■■□ 21
HDAC4-204ENST00000446876 SRSF9Q13242 221 aaKnown RBP eCLIP9.1□□□□□ -0.957e-6■■■■□ 20
HDAC4-204ENST00000446876 CSTF2P33240 577 aaKnown RBP eCLIP14.46□□□□□ -0.091e-6■■■□□ 19
HDAC4-204ENST00000446876 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.39■□□□□ 0.371e-5■■■□□ 18
HDAC4-204ENST00000446876 AQRO60306 1485 aaKnown RBP eCLIP26.01■■□□□ 1.751e-7■■■□□ 16.7
HDAC4-204ENST00000446876 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.56□□□□□ -0.46e-7■■■□□ 15.8
HDAC4-204ENST00000446876 EIF3DO15371 548 aaKnown RBP eCLIP16.12■□□□□ 0.176e-11■■■□□ 14.9
HDAC4-204ENST00000446876 DDX6P26196 483 aaKnown RBP eCLIP15.71■□□□□ 0.114e-7■■■□□ 14.7
HDAC4-204ENST00000446876 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.3■□□□□ 0.046e-9■■□□□ 13.8
HDAC4-204ENST00000446876 PPIGQ13427 754 aaKnown RBP eCLIP16.83■□□□□ 0.287e-9■■□□□ 13.7
HDAC4-204ENST00000446876 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.78■□□□□ 0.922e-6■■□□□ 13.5
HDAC4-204ENST00000446876 HNRNPLP14866 589 aaKnown RBP eCLIP15.41■□□□□ 0.062e-10■■□□□ 13.2
HDAC4-204ENST00000446876 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.84□□□□□ -0.192e-6■■□□□ 12.4
HDAC4-204ENST00000446876 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.67■■□□□ 1.229e-7■■□□□ 12.4
HDAC4-204ENST00000446876 RBFOX2O43251 390 aaKnown RBP eCLIP11.49□□□□□ -0.575e-6■■□□□ 12
HDAC4-204ENST00000446876 SF3B4Q15427 424 aaKnown RBP eCLIP13.37□□□□□ -0.278e-6■■□□□ 11.6
HDAC4-204ENST00000446876 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.83■□□□□ 0.283e-8■■□□□ 11.5
HDAC4-204ENST00000446876 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.88■□□□□ 0.131e-6■■□□□ 11.5
HDAC4-204ENST00000446876 NKRFO15226 690 aaKnown RBP eCLIP17.04■□□□□ 0.328e-6■□□□□ 9.5
HDAC4-204ENST00000446876 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.02■□□□□ 0.88e-7■□□□□ 8.8
Retrieved 42 of 42 RNA–protein pairs in 17.1 ms