RNA–Protein interactions for RNA: ENST00000439117.6

TSC2-206, Transcript of TSC complex subunit 2, humanhuman

TSL 1 (best)

Gene TSC2, Length 5,073 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSC2-206ENST00000439117 DCAF8L2P0C7V8 631 aa26.06■■□□□ 1.76
TSC2-206ENST00000439117 NISCHQ9Y2I1 1504 aa26■■□□□ 1.75
TSC2-206ENST00000439117 SUPT5HO00267 1087 aaKnown RBP24.57■■□□□ 1.52
TSC2-206ENST00000439117 SHROOM4Q9ULL8 1493 aa24.39■■□□□ 1.49
TSC2-206ENST00000439117 PELP1Q8IZL8 1130 aaKnown RBP24.16■■□□□ 1.46
TSC2-206ENST00000439117 MYT1Q01538 1121 aa23.76■■□□□ 1.39
TSC2-206ENST00000439117 EHMT2Q96KQ7 1210 aa23.46■■□□□ 1.35
TSC2-206ENST00000439117 CENPBP07199 599 aaPredicted RBP23.29■■□□□ 1.32
TSC2-206ENST00000439117 PCGF6Q9BYE7 350 aa23.16■■□□□ 1.3
TSC2-206ENST00000439117 ZEB1P37275 1124 aaPredicted RBP23.12■■□□□ 1.29
TSC2-206ENST00000439117 FAM9AQ8IZU1 332 aaPredicted RBP23.09■■□□□ 1.29
TSC2-206ENST00000439117 APLP2Q06481 763 aa23.07■■□□□ 1.28
TSC2-206ENST00000439117 ERICH6Q7L0X2 663 aa23.04■■□□□ 1.28
TSC2-206ENST00000439117 CCER1Q8TC90 406 aaPredicted RBP22.99■■□□□ 1.27
TSC2-206ENST00000439117 TRIM41Q8WV44 630 aa22.86■■□□□ 1.25
TSC2-206ENST00000439117 TTBK1Q5TCY1 1321 aaPredicted RBP22.6■■□□□ 1.21
TSC2-206ENST00000439117 RANGAP1P46060 587 aaPredicted RBP22.6■■□□□ 1.21
TSC2-206ENST00000439117 UBTFP17480 764 aaKnown RBP22.49■■□□□ 1.19
TSC2-206ENST00000439117 NEFLP07196 543 aa22.48■■□□□ 1.19
TSC2-206ENST00000439117 HRCP23327 699 aa22.48■■□□□ 1.19
TSC2-206ENST00000439117 ABCC9O60706 1549 aa22.39■■□□□ 1.17
TSC2-206ENST00000439117 ATP1B4Q9UN42 357 aaPredicted RBP22.39■■□□□ 1.17
TSC2-206ENST00000439117 YTHDC1Q96MU7 727 aaKnown RBP22.31■■□□□ 1.16
TSC2-206ENST00000439117 TRIM26Q12899 539 aaPredicted RBP22.15■■□□□ 1.14
TSC2-206ENST00000439117 PABPN1Q86U42 306 aaKnown RBP eCLIP22.1■■□□□ 1.138e-7■■■□□ 18.8
TSC2-206ENST00000439117 CHIC1Q5VXU3 224 aa22.03■■□□□ 1.12
TSC2-206ENST00000439117 PPARGC1BQ86YN6 1023 aaKnown RBP21.9■■□□□ 1.1
TSC2-206ENST00000439117 LOC105371045A0A1W2PR82 267 aa21.83■■□□□ 1.09
TSC2-206ENST00000439117 DAXXQ9UER7 740 aaPredicted RBP21.78■■□□□ 1.08
TSC2-206ENST00000439117 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.74■■□□□ 1.07
TSC2-206ENST00000439117 HNRNPUL2Q1KMD3 747 aaKnown RBP21.74■■□□□ 1.07
TSC2-206ENST00000439117 RTL5Q5HYW3 569 aaPredicted RBP21.67■■□□□ 1.06
TSC2-206ENST00000439117 DIEXFQ68CQ4 756 aaKnown RBP21.61■■□□□ 1.05
TSC2-206ENST00000439117 ITGAEP38570 1179 aa21.6■■□□□ 1.05
TSC2-206ENST00000439117 ZCCHC6Q5VYS8 1495 aaKnown RBP21.53■■□□□ 1.04
TSC2-206ENST00000439117 GTF3C3Q9Y5Q9 886 aa21.53■■□□□ 1.04
TSC2-206ENST00000439117 MYT1LQ9UL68 1186 aa21.52■■□□□ 1.03
TSC2-206ENST00000439117 CCDC180Q9P1Z9 1646 aa21.46■■□□□ 1.03
TSC2-206ENST00000439117 SCRIBQ14160 1630 aa21.41■■□□□ 1.02
TSC2-206ENST00000439117 ACIN1Q9UKV3 1341 aaKnown RBP21.3■■□□□ 1
TSC2-206ENST00000439117 ZNF316A6NFI3 1004 aaPredicted RBP21.27■■□□□ 1
TSC2-206ENST00000439117 FBLN2P98095 1184 aa21.2■□□□□ 0.98
TSC2-206ENST00000439117 FAM50AQ14320 339 aaKnown RBP21.19■□□□□ 0.98
TSC2-206ENST00000439117 CSRNP3Q8WYN3 585 aa21.16■□□□□ 0.98
TSC2-206ENST00000439117 CDK11AQ9UQ88 783 aaPredicted RBP21.16■□□□□ 0.98
TSC2-206ENST00000439117 POLR3GLQ9BT43 218 aa21.13■□□□□ 0.97
TSC2-206ENST00000439117 BCANQ96GW7 911 aa21.08■□□□□ 0.97
TSC2-206ENST00000439117 RB1CC1Q8TDY2 1594 aa21.05■□□□□ 0.96
TSC2-206ENST00000439117 CLSPNQ9HAW4 1339 aa21.04■□□□□ 0.96
TSC2-206ENST00000439117 TRIM52Q96A61 297 aa20.99■□□□□ 0.95
TSC2-206ENST00000439117 P3H3Q8IVL6 736 aa20.96■□□□□ 0.95
TSC2-206ENST00000439117 NACADO15069 1562 aa20.89■□□□□ 0.94
TSC2-206ENST00000439117 CNGB1Q14028 1251 aaPredicted RBP20.86■□□□□ 0.93
TSC2-206ENST00000439117 ANP32CO43423 234 aa20.85■□□□□ 0.93
TSC2-206ENST00000439117 ANP32AP39687 249 aaKnown RBP20.83■□□□□ 0.93
TSC2-206ENST00000439117 ARID3CA6NKF2 412 aa20.82■□□□□ 0.92
TSC2-206ENST00000439117 EIF5BO60841 1220 aaKnown RBP20.82■□□□□ 0.92
TSC2-206ENST00000439117 NEUROD1Q13562 356 aa20.82■□□□□ 0.92
TSC2-206ENST00000439117 GLIPR1L2Q4G1C9 344 aa20.82■□□□□ 0.92
TSC2-206ENST00000439117 SLC4A1APQ9BWU0 796 aaKnown RBP20.76■□□□□ 0.91
TSC2-206ENST00000439117 RSF1Q96T23 1441 aaPredicted RBP20.74■□□□□ 0.91
TSC2-206ENST00000439117 DCAF1Q9Y4B6 1507 aa20.72■□□□□ 0.91
TSC2-206ENST00000439117 SCAF1Q9H7N4 1312 aaKnown RBP20.7■□□□□ 0.9
TSC2-206ENST00000439117 ZNF777Q9ULD5 760 aaPredicted RBP20.65■□□□□ 0.9
TSC2-206ENST00000439117 ZNF326Q5BKZ1 582 aaKnown RBP20.65■□□□□ 0.9
TSC2-206ENST00000439117 FKBP8Q14318 412 aa20.58■□□□□ 0.88
TSC2-206ENST00000439117 BAZ1BQ9UIG0 1483 aaKnown RBP20.56■□□□□ 0.88
TSC2-206ENST00000439117 NPM1P06748 294 aaKnown RBP eCLIP20.5■□□□□ 0.87
TSC2-206ENST00000439117 CHMP7Q8WUX9 453 aaPredicted RBP20.5■□□□□ 0.87
TSC2-206ENST00000439117 NPM2Q86SE8 214 aaKnown RBP20.45■□□□□ 0.86
TSC2-206ENST00000439117 BAZ1AQ9NRL2 1556 aaPredicted RBP20.45■□□□□ 0.86
TSC2-206ENST00000439117 ANP32BQ92688 251 aaKnown RBP20.44■□□□□ 0.86
TSC2-206ENST00000439117 WRNQ14191 1432 aaPredicted RBP eCLIP20.43■□□□□ 0.86
TSC2-206ENST00000439117 ANP32EQ9BTT0 268 aa20.43■□□□□ 0.86
TSC2-206ENST00000439117 EEA1Q15075 1411 aa20.42■□□□□ 0.86
TSC2-206ENST00000439117 ZBTB47Q9UFB7 747 aaPredicted RBP20.39■□□□□ 0.85
TSC2-206ENST00000439117 CECR2Q9BXF3 1484 aa20.39■□□□□ 0.85
TSC2-206ENST00000439117 CLIP1P30622 1438 aa20.38■□□□□ 0.85
TSC2-206ENST00000439117 NBR1Q14596 966 aa20.34■□□□□ 0.85
TSC2-206ENST00000439117 MTUS2Q5JR59 1369 aa20.34■□□□□ 0.85
TSC2-206ENST00000439117 ESF1Q9H501 851 aaKnown RBP20.32■□□□□ 0.84
TSC2-206ENST00000439117 GOLGA3Q08378 1498 aa20.29■□□□□ 0.84
TSC2-206ENST00000439117 CANXP27824 592 aaKnown RBP20.29■□□□□ 0.84
TSC2-206ENST00000439117 KIF27Q86VH2 1401 aa20.28■□□□□ 0.84
TSC2-206ENST00000439117 CHIC2Q9UKJ5 165 aa20.28■□□□□ 0.84
TSC2-206ENST00000439117 MYO15BQ96JP2 1530 aa20.27■□□□□ 0.83
TSC2-206ENST00000439117 TONSLQ96HA7 1378 aa20.27■□□□□ 0.83
TSC2-206ENST00000439117 TSPY4P0CV99 314 aa20.26■□□□□ 0.83
TSC2-206ENST00000439117 TSPY10P0CW01 314 aa20.26■□□□□ 0.83
TSC2-206ENST00000439117 HNRNPUQ00839 825 aaKnown RBP eCLIP20.25■□□□□ 0.83
TSC2-206ENST00000439117 UPF2Q9HAU5 1272 aaKnown RBP20.21■□□□□ 0.83
TSC2-206ENST00000439117 CHGAP10645 457 aaKnown RBP20.2■□□□□ 0.82
TSC2-206ENST00000439117 CEP162Q5TB80 1403 aa20.2■□□□□ 0.82
TSC2-206ENST00000439117 CCDC136Q96JN2 1154 aa20.18■□□□□ 0.82
TSC2-206ENST00000439117 STAG3Q9UJ98 1225 aa20.17■□□□□ 0.82
TSC2-206ENST00000439117 ERCC6Q03468 1493 aa20.16■□□□□ 0.82
TSC2-206ENST00000439117 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.16■□□□□ 0.823e-6■■■□□ 15.2
TSC2-206ENST00000439117 CEP164Q9UPV0 1460 aa20.14■□□□□ 0.82
TSC2-206ENST00000439117 MIER1Q8N108 512 aa20.14■□□□□ 0.81
TSC2-206ENST00000439117 PLEKHD1A6NEE1 506 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 121.6 ms