RNA–Protein interactions for RNA: ENST00000437425.6

SGCE-205, Transcript of sarcoglycan epsilon, humanhuman

TSL 2 BASIC

Gene SGCE, Length 1,508 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-205ENST00000437425 NISCHQ9Y2I1 1504 aa34.4■■■■□ 3.1
SGCE-205ENST00000437425 CCDC180Q9P1Z9 1646 aa30■■■□□ 2.39
SGCE-205ENST00000437425 ZCCHC6Q5VYS8 1495 aaKnown RBP28.93■■■□□ 2.22
SGCE-205ENST00000437425 DCAF1Q9Y4B6 1507 aa28.57■■■□□ 2.16
SGCE-205ENST00000437425 DCAF8L2P0C7V8 631 aa28.22■■■□□ 2.11
SGCE-205ENST00000437425 MYO15BQ96JP2 1530 aa28.21■■■□□ 2.11
SGCE-205ENST00000437425 ABCC9O60706 1549 aa28.03■■■□□ 2.08
SGCE-205ENST00000437425 SHROOM4Q9ULL8 1493 aa27.95■■■□□ 2.07
SGCE-205ENST00000437425 NACADO15069 1562 aa27.92■■■□□ 2.06
SGCE-205ENST00000437425 RB1CC1Q8TDY2 1594 aa27.61■■■□□ 2.01
SGCE-205ENST00000437425 SCRIBQ14160 1630 aa27.43■■□□□ 1.98
SGCE-205ENST00000437425 SUPT5HO00267 1087 aaKnown RBP27.05■■□□□ 1.92
SGCE-205ENST00000437425 UNC13AQ9UPW8 1703 aa26.9■■□□□ 1.9
SGCE-205ENST00000437425 RSF1Q96T23 1441 aaPredicted RBP26.71■■□□□ 1.87
SGCE-205ENST00000437425 BICRAQ9NZM4 1560 aa26.65■■□□□ 1.86
SGCE-205ENST00000437425 BAZ1AQ9NRL2 1556 aaPredicted RBP26.6■■□□□ 1.85
SGCE-205ENST00000437425 CECR2Q9BXF3 1484 aa26.59■■□□□ 1.85
SGCE-205ENST00000437425 MROH2BQ7Z745 1585 aa26.5■■□□□ 1.83
SGCE-205ENST00000437425 PABPN1Q86U42 306 aaKnown RBP eCLIP26.42■■□□□ 1.82
SGCE-205ENST00000437425 DNAJC5BQ9UF47 199 aa26.42■■□□□ 1.82
SGCE-205ENST00000437425 SMARCA4P51532 1647 aa26.39■■□□□ 1.82
SGCE-205ENST00000437425 WIZO95785 1651 aa26.26■■□□□ 1.8
SGCE-205ENST00000437425 PEG3Q9GZU2 1588 aa26.14■■□□□ 1.77
SGCE-205ENST00000437425 TOP2AP11388 1531 aaKnown RBP26.11■■□□□ 1.77
SGCE-205ENST00000437425 CHIC1Q5VXU3 224 aa26.04■■□□□ 1.76
SGCE-205ENST00000437425 SMARCA2P51531 1590 aa26■■□□□ 1.75
SGCE-205ENST00000437425 ATAD2BQ9ULI0 1458 aa25.92■■□□□ 1.74
SGCE-205ENST00000437425 EIF4G1Q04637 1599 aaKnown RBP25.87■■□□□ 1.73
SGCE-205ENST00000437425 BAZ1BQ9UIG0 1483 aaKnown RBP25.8■■□□□ 1.72
SGCE-205ENST00000437425 CCDC88BA6NC98 1476 aa25.79■■□□□ 1.72
SGCE-205ENST00000437425 NCAPD3P42695 1498 aa25.74■■□□□ 1.71
SGCE-205ENST00000437425 HMGXB3Q12766 1538 aa25.72■■□□□ 1.71
SGCE-205ENST00000437425 TRIM41Q8WV44 630 aa25.53■■□□□ 1.68
SGCE-205ENST00000437425 CC2D2AQ9P2K1 1620 aa25.43■■□□□ 1.66
SGCE-205ENST00000437425 ABCC8Q09428 1581 aa25.21■■□□□ 1.63
SGCE-205ENST00000437425 CFTRP13569 1480 aa25.19■■□□□ 1.62
SGCE-205ENST00000437425 WRNQ14191 1432 aaPredicted RBP eCLIP25.17■■□□□ 1.62
SGCE-205ENST00000437425 PRDM2Q13029 1718 aa25.06■■□□□ 1.6
SGCE-205ENST00000437425 CADPSQ9ULU8 1353 aa25.06■■□□□ 1.6
SGCE-205ENST00000437425 EEA1Q15075 1411 aa25.04■■□□□ 1.6
SGCE-205ENST00000437425 SYNJ1O43426 1573 aa24.97■■□□□ 1.59
SGCE-205ENST00000437425 TOP2BQ02880 1626 aa24.95■■□□□ 1.59
SGCE-205ENST00000437425 LOC105371045A0A1W2PR82 267 aa24.93■■□□□ 1.58
SGCE-205ENST00000437425 BIVM-ERCC5R4GMW8 1640 aa24.93■■□□□ 1.58
SGCE-205ENST00000437425 FAM9AQ8IZU1 332 aaPredicted RBP24.91■■□□□ 1.58
SGCE-205ENST00000437425 LAMC3Q9Y6N6 1575 aa24.85■■□□□ 1.57
SGCE-205ENST00000437425 SOGA1O94964 1423 aa24.81■■□□□ 1.56
SGCE-205ENST00000437425 CUX1P39880 1505 aa24.79■■□□□ 1.56
SGCE-205ENST00000437425 CSRNP3Q8WYN3 585 aa24.76■■□□□ 1.55
SGCE-205ENST00000437425 FANCD2Q9BXW9 1451 aa24.75■■□□□ 1.55
SGCE-205ENST00000437425 PDS5BQ9NTI5 1447 aa24.66■■□□□ 1.54
SGCE-205ENST00000437425 RUSC2Q8N2Y8 1516 aa24.65■■□□□ 1.54
SGCE-205ENST00000437425 NESP48681 1621 aa24.63■■□□□ 1.53
SGCE-205ENST00000437425 CEP164Q9UPV0 1460 aa24.61■■□□□ 1.53
SGCE-205ENST00000437425 DNMBPQ6XZF7 1577 aa24.6■■□□□ 1.53
SGCE-205ENST00000437425 GOLGA3Q08378 1498 aa24.59■■□□□ 1.53
SGCE-205ENST00000437425 KIF21BO75037 1637 aa24.59■■□□□ 1.53
SGCE-205ENST00000437425 KIF27Q86VH2 1401 aa24.57■■□□□ 1.52
SGCE-205ENST00000437425 TNIKQ9UKE5 1360 aa24.55■■□□□ 1.52
SGCE-205ENST00000437425 FGD5Q6ZNL6 1462 aa24.51■■□□□ 1.51
SGCE-205ENST00000437425 TOPBP1Q92547 1522 aa24.49■■□□□ 1.51
SGCE-205ENST00000437425 DNAJC5Q9H3Z4 198 aa24.47■■□□□ 1.51
SGCE-205ENST00000437425 ERICH3Q5RHP9 1530 aa24.44■■□□□ 1.5
SGCE-205ENST00000437425 EHMT2Q96KQ7 1210 aa24.43■■□□□ 1.5
SGCE-205ENST00000437425 UBTFP17480 764 aaKnown RBP24.41■■□□□ 1.5
SGCE-205ENST00000437425 PRXQ9BXM0 1461 aa24.41■■□□□ 1.5
SGCE-205ENST00000437425 CUX2O14529 1486 aa24.39■■□□□ 1.5
SGCE-205ENST00000437425 URB2Q14146 1524 aaKnown RBP24.38■■□□□ 1.49
SGCE-205ENST00000437425 POLA1P09884 1462 aaPredicted RBP24.38■■□□□ 1.49
SGCE-205ENST00000437425 KIF21AQ7Z4S6 1674 aa24.37■■□□□ 1.49
SGCE-205ENST00000437425 ABCA10Q8WWZ4 1543 aa24.37■■□□□ 1.49
SGCE-205ENST00000437425 CEP162Q5TB80 1403 aa24.36■■□□□ 1.49
SGCE-205ENST00000437425 RAPGEF2Q9Y4G8 1499 aa24.32■■□□□ 1.48
SGCE-205ENST00000437425 MRC2Q9UBG0 1479 aa24.28■■□□□ 1.48
SGCE-205ENST00000437425 IGF1RP08069 1367 aa24.27■■□□□ 1.48
SGCE-205ENST00000437425 RAD54L2Q9Y4B4 1467 aa24.22■■□□□ 1.47
SGCE-205ENST00000437425 WDR97A6NE52 1622 aa24.21■■□□□ 1.47
SGCE-205ENST00000437425 CARMIL1Q5VZK9 1371 aa24.17■■□□□ 1.46
SGCE-205ENST00000437425 CLIP1P30622 1438 aa24.16■■□□□ 1.46
SGCE-205ENST00000437425 WDR62O43379 1518 aa24.15■■□□□ 1.46
SGCE-205ENST00000437425 CUL7Q14999 1698 aa24.15■■□□□ 1.46
SGCE-205ENST00000437425 TRIM26Q12899 539 aaPredicted RBP24.13■■□□□ 1.45
SGCE-205ENST00000437425 ERCC6Q03468 1493 aa24.12■■□□□ 1.45
SGCE-205ENST00000437425 ABCA5Q8WWZ7 1642 aa24.11■■□□□ 1.45
SGCE-205ENST00000437425 TARBP1Q13395 1621 aaKnown RBP24.1■■□□□ 1.45
SGCE-205ENST00000437425 GAPVD1Q14C86 1478 aa24.07■■□□□ 1.44
SGCE-205ENST00000437425 IFT140Q96RY7 1462 aa24.05■■□□□ 1.44
SGCE-205ENST00000437425 PCGF6Q9BYE7 350 aa24.02■■□□□ 1.44
SGCE-205ENST00000437425 VPS8Q8N3P4 1428 aa24■■□□□ 1.43
SGCE-205ENST00000437425 TDRD9Q8NDG6 1382 aaKnown RBP23.99■■□□□ 1.43
SGCE-205ENST00000437425 THOC2Q8NI27 1593 aaKnown RBP23.98■■□□□ 1.43
SGCE-205ENST00000437425 GRIN2BQ13224 1484 aa23.89■■□□□ 1.42
SGCE-205ENST00000437425 PBRM1Q86U86 1689 aa23.88■■□□□ 1.41
SGCE-205ENST00000437425 ARAP1Q96P48 1450 aa23.86■■□□□ 1.41
SGCE-205ENST00000437425 FHAD1B1AJZ9 1412 aa23.86■■□□□ 1.41
SGCE-205ENST00000437425 ARHGAP35Q9NRY4 1499 aa23.84■■□□□ 1.41
SGCE-205ENST00000437425 CTTNBP2Q8WZ74 1663 aa23.83■■□□□ 1.41
SGCE-205ENST00000437425 APLP2Q06481 763 aa23.83■■□□□ 1.41
SGCE-205ENST00000437425 AQRO60306 1485 aaKnown RBP eCLIP23.81■■□□□ 1.4
SGCE-205ENST00000437425 EFCAB5A4FU69 1503 aa23.81■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms