RNA–Protein interactions for RNA: ENST00000435213.6

GARNL3-205, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 2 BASIC

Gene GARNL3, Length 3,599 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-205ENST00000435213 NISCHQ9Y2I1 1504 aa13.74□□□□□ -0.21
GARNL3-205ENST00000435213 PELP1Q8IZL8 1130 aaKnown RBP13.28□□□□□ -0.28
GARNL3-205ENST00000435213 MYT1Q01538 1121 aa13.15□□□□□ -0.3
GARNL3-205ENST00000435213 TTBK1Q5TCY1 1321 aaPredicted RBP12.65□□□□□ -0.38
GARNL3-205ENST00000435213 CCDC180Q9P1Z9 1646 aa12.36□□□□□ -0.43
GARNL3-205ENST00000435213 ERICH6Q7L0X2 663 aa12.08□□□□□ -0.48
GARNL3-205ENST00000435213 PRKCSHP14314 528 aaPredicted RBP12.08□□□□□ -0.48
GARNL3-205ENST00000435213 HRCP23327 699 aa12.07□□□□□ -0.48
GARNL3-205ENST00000435213 SLC24A1O60721 1099 aa11.9□□□□□ -0.5
GARNL3-205ENST00000435213 APLP2Q06481 763 aa11.88□□□□□ -0.51
GARNL3-205ENST00000435213 BCL11AQ9H165 835 aa11.82□□□□□ -0.52
GARNL3-205ENST00000435213 SCAF1Q9H7N4 1312 aaKnown RBP11.81□□□□□ -0.52
GARNL3-205ENST00000435213 SHROOM4Q9ULL8 1493 aa11.76□□□□□ -0.53
GARNL3-205ENST00000435213 DCAF1Q9Y4B6 1507 aa11.69□□□□□ -0.54
GARNL3-205ENST00000435213 ZCCHC6Q5VYS8 1495 aaKnown RBP11.69□□□□□ -0.54
GARNL3-205ENST00000435213 SUPT5HO00267 1087 aaKnown RBP11.66□□□□□ -0.54
GARNL3-205ENST00000435213 MYO15BQ96JP2 1530 aa11.64□□□□□ -0.55
GARNL3-205ENST00000435213 DCAF8L2P0C7V8 631 aa11.63□□□□□ -0.55
GARNL3-205ENST00000435213 CENPBP07199 599 aaPredicted RBP11.6□□□□□ -0.55
GARNL3-205ENST00000435213 FAM9AQ8IZU1 332 aaPredicted RBP11.6□□□□□ -0.55
GARNL3-205ENST00000435213 CHIC1Q5VXU3 224 aa11.56□□□□□ -0.56
GARNL3-205ENST00000435213 PPARGC1BQ86YN6 1023 aaKnown RBP11.56□□□□□ -0.56
GARNL3-205ENST00000435213 PCGF6Q9BYE7 350 aa11.47□□□□□ -0.57
GARNL3-205ENST00000435213 DAXXQ9UER7 740 aaPredicted RBP11.44□□□□□ -0.58
GARNL3-205ENST00000435213 ACIN1Q9UKV3 1341 aaKnown RBP11.37□□□□□ -0.59
GARNL3-205ENST00000435213 ABCC9O60706 1549 aa11.35□□□□□ -0.59
GARNL3-205ENST00000435213 NACADO15069 1562 aa11.3□□□□□ -0.6
GARNL3-205ENST00000435213 ANP32EQ9BTT0 268 aa11.27□□□□□ -0.61
GARNL3-205ENST00000435213 GTF3C3Q9Y5Q9 886 aa11.27□□□□□ -0.61
GARNL3-205ENST00000435213 TRIM26Q12899 539 aaPredicted RBP11.27□□□□□ -0.61
GARNL3-205ENST00000435213 EIF5BO60841 1220 aaKnown RBP11.26□□□□□ -0.61
GARNL3-205ENST00000435213 ZEB1P37275 1124 aaPredicted RBP11.25□□□□□ -0.61
GARNL3-205ENST00000435213 NEUROD1Q13562 356 aa11.18□□□□□ -0.62
GARNL3-205ENST00000435213 LOC105371045A0A1W2PR82 267 aa11.16□□□□□ -0.62
GARNL3-205ENST00000435213 UNC13AQ9UPW8 1703 aa11.15□□□□□ -0.62
GARNL3-205ENST00000435213 RB1CC1Q8TDY2 1594 aa11.1□□□□□ -0.63
GARNL3-205ENST00000435213 CSRNP3Q8WYN3 585 aa11.07□□□□□ -0.64
GARNL3-205ENST00000435213 UBE2Q2Q8WVN8 375 aa11.02□□□□□ -0.64
GARNL3-205ENST00000435213 RSF1Q96T23 1441 aaPredicted RBP10.93□□□□□ -0.66
GARNL3-205ENST00000435213 ANO8Q9HCE9 1232 aaPredicted RBP10.91□□□□□ -0.66
GARNL3-205ENST00000435213 BICRAQ9NZM4 1560 aa10.91□□□□□ -0.66
GARNL3-205ENST00000435213 TRIM41Q8WV44 630 aa10.89□□□□□ -0.67
GARNL3-205ENST00000435213 PABPN1Q86U42 306 aaKnown RBP eCLIP10.86□□□□□ -0.67
GARNL3-205ENST00000435213 PLEKHG5O94827 1062 aa10.84□□□□□ -0.67
GARNL3-205ENST00000435213 SCRIBQ14160 1630 aa10.84□□□□□ -0.67
GARNL3-205ENST00000435213 PODXL2Q9NZ53 605 aa10.83□□□□□ -0.68
GARNL3-205ENST00000435213 PKNOX2Q96KN3 472 aa10.78□□□□□ -0.68
GARNL3-205ENST00000435213 MYT1LQ9UL68 1186 aa10.78□□□□□ -0.68
GARNL3-205ENST00000435213 ERICH6BQ5W0A0 696 aa10.76□□□□□ -0.69
GARNL3-205ENST00000435213 PEG3Q9GZU2 1588 aa10.75□□□□□ -0.69
GARNL3-205ENST00000435213 CLSPNQ9HAW4 1339 aa10.74□□□□□ -0.69
GARNL3-205ENST00000435213 EIF4G1Q04637 1599 aaKnown RBP10.71□□□□□ -0.69
GARNL3-205ENST00000435213 CCER1Q8TC90 406 aaPredicted RBP10.7□□□□□ -0.7
GARNL3-205ENST00000435213 TSHZ2Q9NRE2 1034 aa10.7□□□□□ -0.7
GARNL3-205ENST00000435213 DIEXFQ68CQ4 756 aaKnown RBP10.69□□□□□ -0.7
GARNL3-205ENST00000435213 WRNQ14191 1432 aaPredicted RBP eCLIP10.68□□□□□ -0.7
GARNL3-205ENST00000435213 BAZ1AQ9NRL2 1556 aaPredicted RBP10.67□□□□□ -0.7
GARNL3-205ENST00000435213 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.67□□□□□ -0.7
GARNL3-205ENST00000435213 SALL2Q9Y467 1007 aaPredicted RBP10.66□□□□□ -0.7
GARNL3-205ENST00000435213 MROH2BQ7Z745 1585 aa10.65□□□□□ -0.7
GARNL3-205ENST00000435213 WIZO95785 1651 aa10.64□□□□□ -0.71
GARNL3-205ENST00000435213 SMARCA4P51532 1647 aa10.63□□□□□ -0.71
GARNL3-205ENST00000435213 CECR2Q9BXF3 1484 aa10.61□□□□□ -0.71
GARNL3-205ENST00000435213 NEFLP07196 543 aa10.6□□□□□ -0.71
GARNL3-205ENST00000435213 CCDC136Q96JN2 1154 aa10.59□□□□□ -0.71
GARNL3-205ENST00000435213 EHMT2Q96KQ7 1210 aa10.58□□□□□ -0.72
GARNL3-205ENST00000435213 RANGAP1P46060 587 aaPredicted RBP10.57□□□□□ -0.72
GARNL3-205ENST00000435213 ZNF316A6NFI3 1004 aaPredicted RBP10.55□□□□□ -0.72
GARNL3-205ENST00000435213 CEP162Q5TB80 1403 aa10.55□□□□□ -0.72
GARNL3-205ENST00000435213 TNIKQ9UKE5 1360 aa10.52□□□□□ -0.72
GARNL3-205ENST00000435213 EEA1Q15075 1411 aa10.52□□□□□ -0.73
GARNL3-205ENST00000435213 TOP2AP11388 1531 aaKnown RBP10.52□□□□□ -0.73
GARNL3-205ENST00000435213 SMARCA2P51531 1590 aa10.51□□□□□ -0.73
GARNL3-205ENST00000435213 DEKP35659 375 aaKnown RBP10.51□□□□□ -0.73
GARNL3-205ENST00000435213 NCBP3Q53F19 620 aaKnown RBP10.51□□□□□ -0.73
GARNL3-205ENST00000435213 YTHDC1Q96MU7 727 aaKnown RBP10.51□□□□□ -0.73
GARNL3-205ENST00000435213 SUPT16HQ9Y5B9 1047 aaKnown RBP10.51□□□□□ -0.73
GARNL3-205ENST00000435213 GLIPR1L2Q4G1C9 344 aa10.48□□□□□ -0.73
GARNL3-205ENST00000435213 ABCC8Q09428 1581 aa10.48□□□□□ -0.73
GARNL3-205ENST00000435213 CCDC88BA6NC98 1476 aa10.47□□□□□ -0.73
GARNL3-205ENST00000435213 HMGXB3Q12766 1538 aa10.47□□□□□ -0.73
GARNL3-205ENST00000435213 GOLGA3Q08378 1498 aa10.44□□□□□ -0.74
GARNL3-205ENST00000435213 PDE4CQ08493 712 aa10.44□□□□□ -0.74
GARNL3-205ENST00000435213 PRDM2Q13029 1718 aa10.43□□□□□ -0.74
GARNL3-205ENST00000435213 ARXQ96QS3 562 aa10.42□□□□□ -0.74
GARNL3-205ENST00000435213 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.42□□□□□ -0.74
GARNL3-205ENST00000435213 PDIA4P13667 645 aaKnown RBP10.42□□□□□ -0.74
GARNL3-205ENST00000435213 SOGA1O94964 1423 aa10.4□□□□□ -0.75
GARNL3-205ENST00000435213 RBM19Q9Y4C8 960 aaKnown RBP10.4□□□□□ -0.75
GARNL3-205ENST00000435213 KIF21BO75037 1637 aa10.4□□□□□ -0.75
GARNL3-205ENST00000435213 MIER1Q8N108 512 aa10.39□□□□□ -0.75
GARNL3-205ENST00000435213 CEP164Q9UPV0 1460 aa10.34□□□□□ -0.75
GARNL3-205ENST00000435213 NCAPD3P42695 1498 aa10.33□□□□□ -0.76
GARNL3-205ENST00000435213 KLHL34Q8N239 644 aa10.33□□□□□ -0.76
GARNL3-205ENST00000435213 RUSC2Q8N2Y8 1516 aa10.33□□□□□ -0.76
GARNL3-205ENST00000435213 ATAD2BQ9ULI0 1458 aa10.32□□□□□ -0.76
GARNL3-205ENST00000435213 BAZ1BQ9UIG0 1483 aaKnown RBP10.31□□□□□ -0.76
GARNL3-205ENST00000435213 UBTFP17480 764 aaKnown RBP10.31□□□□□ -0.76
GARNL3-205ENST00000435213 FGD1P98174 961 aa10.31□□□□□ -0.76
GARNL3-205ENST00000435213 VPS8Q8N3P4 1428 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms