RNA–Protein interactions for RNA: ENST00000432057.2

VRK2-205, Transcript of vaccinia related kinase 2, humanhuman

TSL 1 (best)

Gene VRK2, Length 1,870 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK2-205ENST00000432057 NISCHQ9Y2I1 1504 aa43.42■■■■■ 4.54
VRK2-205ENST00000432057 CCDC180Q9P1Z9 1646 aa37.72■■■■□ 3.63
VRK2-205ENST00000432057 ZCCHC6Q5VYS8 1495 aaKnown RBP36.59■■■■□ 3.45
VRK2-205ENST00000432057 SHROOM4Q9ULL8 1493 aa35.88■■■■□ 3.33
VRK2-205ENST00000432057 DCAF1Q9Y4B6 1507 aa35.82■■■■□ 3.33
VRK2-205ENST00000432057 DCAF8L2P0C7V8 631 aa35.75■■■■□ 3.31
VRK2-205ENST00000432057 ABCC9O60706 1549 aa35.3■■■■□ 3.24
VRK2-205ENST00000432057 MYO15BQ96JP2 1530 aa35.19■■■■□ 3.22
VRK2-205ENST00000432057 NACADO15069 1562 aa34.93■■■■□ 3.18
VRK2-205ENST00000432057 SCRIBQ14160 1630 aa34.85■■■■□ 3.17
VRK2-205ENST00000432057 SUPT5HO00267 1087 aaKnown RBP34.66■■■■□ 3.14
VRK2-205ENST00000432057 RB1CC1Q8TDY2 1594 aa34.57■■■■□ 3.12
VRK2-205ENST00000432057 UNC13AQ9UPW8 1703 aa34.14■■■■□ 3.06
VRK2-205ENST00000432057 RSF1Q96T23 1441 aaPredicted RBP33.85■■■■□ 3.01
VRK2-205ENST00000432057 CECR2Q9BXF3 1484 aa33.77■■■■□ 3
VRK2-205ENST00000432057 MROH2BQ7Z745 1585 aa33.63■■■□□ 2.97
VRK2-205ENST00000432057 BICRAQ9NZM4 1560 aa33.61■■■□□ 2.97
VRK2-205ENST00000432057 BAZ1AQ9NRL2 1556 aaPredicted RBP33.49■■■□□ 2.95
VRK2-205ENST00000432057 WIZO95785 1651 aa33.47■■■□□ 2.95
VRK2-205ENST00000432057 SMARCA4P51532 1647 aa33.37■■■□□ 2.93
VRK2-205ENST00000432057 CHIC1Q5VXU3 224 aa33.35■■■□□ 2.93
VRK2-205ENST00000432057 PABPN1Q86U42 306 aaKnown RBP eCLIP33.34■■■□□ 2.93
VRK2-205ENST00000432057 TOP2AP11388 1531 aaKnown RBP33.02■■■□□ 2.88
VRK2-205ENST00000432057 PEG3Q9GZU2 1588 aa32.85■■■□□ 2.85
VRK2-205ENST00000432057 SMARCA2P51531 1590 aa32.77■■■□□ 2.84
VRK2-205ENST00000432057 EIF4G1Q04637 1599 aaKnown RBP32.73■■■□□ 2.83
VRK2-205ENST00000432057 CCDC88BA6NC98 1476 aa32.68■■■□□ 2.82
VRK2-205ENST00000432057 ATAD2BQ9ULI0 1458 aa32.62■■■□□ 2.81
VRK2-205ENST00000432057 BAZ1BQ9UIG0 1483 aaKnown RBP32.49■■■□□ 2.79
VRK2-205ENST00000432057 TRIM41Q8WV44 630 aa32.47■■■□□ 2.79
VRK2-205ENST00000432057 HMGXB3Q12766 1538 aa32.26■■■□□ 2.76
VRK2-205ENST00000432057 ABCC8Q09428 1581 aa32.26■■■□□ 2.76
VRK2-205ENST00000432057 NCAPD3P42695 1498 aa32.19■■■□□ 2.74
VRK2-205ENST00000432057 LOC105371045A0A1W2PR82 267 aa32.16■■■□□ 2.74
VRK2-205ENST00000432057 FAM9AQ8IZU1 332 aaPredicted RBP32.01■■■□□ 2.72
VRK2-205ENST00000432057 CC2D2AQ9P2K1 1620 aa31.97■■■□□ 2.71
VRK2-205ENST00000432057 WRNQ14191 1432 aaPredicted RBP eCLIP31.85■■■□□ 2.69
VRK2-205ENST00000432057 SYNJ1O43426 1573 aa31.83■■■□□ 2.69
VRK2-205ENST00000432057 PRDM2Q13029 1718 aa31.73■■■□□ 2.67
VRK2-205ENST00000432057 SOGA1O94964 1423 aa31.66■■■□□ 2.66
VRK2-205ENST00000432057 CFTRP13569 1480 aa31.64■■■□□ 2.66
VRK2-205ENST00000432057 EHMT2Q96KQ7 1210 aa31.64■■■□□ 2.66
VRK2-205ENST00000432057 TOP2BQ02880 1626 aa31.6■■■□□ 2.65
VRK2-205ENST00000432057 BIVM-ERCC5R4GMW8 1640 aa31.6■■■□□ 2.65
VRK2-205ENST00000432057 RUSC2Q8N2Y8 1516 aa31.56■■■□□ 2.64
VRK2-205ENST00000432057 EEA1Q15075 1411 aa31.55■■■□□ 2.64
VRK2-205ENST00000432057 CUX1P39880 1505 aa31.42■■■□□ 2.62
VRK2-205ENST00000432057 CADPSQ9ULU8 1353 aa31.41■■■□□ 2.62
VRK2-205ENST00000432057 CSRNP3Q8WYN3 585 aa31.35■■■□□ 2.61
VRK2-205ENST00000432057 KIF21BO75037 1637 aa31.25■■■□□ 2.59
VRK2-205ENST00000432057 GOLGA3Q08378 1498 aa31.22■■■□□ 2.59
VRK2-205ENST00000432057 DNAJC5BQ9UF47 199 aa31.21■■■□□ 2.59
VRK2-205ENST00000432057 CEP164Q9UPV0 1460 aa31.17■■■□□ 2.58
VRK2-205ENST00000432057 NESP48681 1621 aa31.16■■■□□ 2.58
VRK2-205ENST00000432057 TNIKQ9UKE5 1360 aa31.16■■■□□ 2.58
VRK2-205ENST00000432057 FANCD2Q9BXW9 1451 aa31.15■■■□□ 2.58
VRK2-205ENST00000432057 PCGF6Q9BYE7 350 aa31.14■■■□□ 2.58
VRK2-205ENST00000432057 CEP162Q5TB80 1403 aa31.11■■■□□ 2.57
VRK2-205ENST00000432057 LAMC3Q9Y6N6 1575 aa31.11■■■□□ 2.57
VRK2-205ENST00000432057 UBTFP17480 764 aaKnown RBP31.04■■■□□ 2.56
VRK2-205ENST00000432057 FGD5Q6ZNL6 1462 aa30.99■■■□□ 2.55
VRK2-205ENST00000432057 RAPGEF2Q9Y4G8 1499 aa30.99■■■□□ 2.55
VRK2-205ENST00000432057 DNMBPQ6XZF7 1577 aa30.98■■■□□ 2.55
VRK2-205ENST00000432057 KIF27Q86VH2 1401 aa30.97■■■□□ 2.55
VRK2-205ENST00000432057 TRIM26Q12899 539 aaPredicted RBP30.94■■■□□ 2.54
VRK2-205ENST00000432057 ERICH3Q5RHP9 1530 aa30.91■■■□□ 2.54
VRK2-205ENST00000432057 PRXQ9BXM0 1461 aa30.89■■■□□ 2.54
VRK2-205ENST00000432057 KIF21AQ7Z4S6 1674 aa30.89■■■□□ 2.53
VRK2-205ENST00000432057 TOPBP1Q92547 1522 aa30.88■■■□□ 2.53
VRK2-205ENST00000432057 CUX2O14529 1486 aa30.86■■■□□ 2.53
VRK2-205ENST00000432057 PDS5BQ9NTI5 1447 aa30.78■■■□□ 2.52
VRK2-205ENST00000432057 URB2Q14146 1524 aaKnown RBP30.78■■■□□ 2.52
VRK2-205ENST00000432057 POLA1P09884 1462 aaPredicted RBP30.76■■■□□ 2.51
VRK2-205ENST00000432057 CLIP1P30622 1438 aa30.74■■■□□ 2.51
VRK2-205ENST00000432057 RAD54L2Q9Y4B4 1467 aa30.7■■■□□ 2.51
VRK2-205ENST00000432057 PPARGC1BQ86YN6 1023 aaKnown RBP30.7■■■□□ 2.5
VRK2-205ENST00000432057 WDR97A6NE52 1622 aa30.69■■■□□ 2.5
VRK2-205ENST00000432057 ABCA10Q8WWZ4 1543 aa30.67■■■□□ 2.5
VRK2-205ENST00000432057 IGF1RP08069 1367 aa30.64■■■□□ 2.5
VRK2-205ENST00000432057 HRCP23327 699 aa30.57■■■□□ 2.48
VRK2-205ENST00000432057 RANGAP1P46060 587 aaPredicted RBP30.53■■■□□ 2.48
VRK2-205ENST00000432057 VPS8Q8N3P4 1428 aa30.53■■■□□ 2.48
VRK2-205ENST00000432057 CARMIL1Q5VZK9 1371 aa30.51■■■□□ 2.47
VRK2-205ENST00000432057 ABCA5Q8WWZ7 1642 aa30.48■■■□□ 2.47
VRK2-205ENST00000432057 CUL7Q14999 1698 aa30.48■■■□□ 2.47
VRK2-205ENST00000432057 ARAP1Q96P48 1450 aa30.45■■■□□ 2.46
VRK2-205ENST00000432057 MRC2Q9UBG0 1479 aa30.43■■■□□ 2.46
VRK2-205ENST00000432057 TARBP1Q13395 1621 aaKnown RBP30.42■■■□□ 2.46
VRK2-205ENST00000432057 TTBK1Q5TCY1 1321 aaPredicted RBP30.39■■■□□ 2.46
VRK2-205ENST00000432057 ARHGAP35Q9NRY4 1499 aa30.33■■■□□ 2.45
VRK2-205ENST00000432057 TDRD9Q8NDG6 1382 aaKnown RBP30.32■■■□□ 2.44
VRK2-205ENST00000432057 CTTNBP2Q8WZ74 1663 aa30.31■■■□□ 2.44
VRK2-205ENST00000432057 GAPVD1Q14C86 1478 aa30.31■■■□□ 2.44
VRK2-205ENST00000432057 PBRM1Q86U86 1689 aa30.29■■■□□ 2.44
VRK2-205ENST00000432057 WDR62O43379 1518 aa30.27■■■□□ 2.44
VRK2-205ENST00000432057 ERCC6Q03468 1493 aa30.24■■■□□ 2.43
VRK2-205ENST00000432057 THOC2Q8NI27 1593 aaKnown RBP30.17■■■□□ 2.42
VRK2-205ENST00000432057 APLP2Q06481 763 aa30.16■■■□□ 2.42
VRK2-205ENST00000432057 IFT140Q96RY7 1462 aa30.09■■■□□ 2.41
VRK2-205ENST00000432057 AQRO60306 1485 aaKnown RBP eCLIP30.07■■■□□ 2.47e-6■□□□□ 9.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms