RNA–Protein interactions for RNA: ENST00000429629.6

GARNL3-204, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 5

Gene GARNL3, Length 694 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-204ENST00000429629 NISCHQ9Y2I1 1504 aa35.74■■■■□ 3.31
GARNL3-204ENST00000429629 CCDC180Q9P1Z9 1646 aa31.55■■■□□ 2.64
GARNL3-204ENST00000429629 ABCC9O60706 1549 aa30.61■■■□□ 2.49
GARNL3-204ENST00000429629 ZCCHC6Q5VYS8 1495 aaKnown RBP29.81■■■□□ 2.36
GARNL3-204ENST00000429629 MYO15BQ96JP2 1530 aa29.75■■■□□ 2.35
GARNL3-204ENST00000429629 NACADO15069 1562 aa29.72■■■□□ 2.35
GARNL3-204ENST00000429629 DCAF8L2P0C7V8 631 aa29.71■■■□□ 2.35
GARNL3-204ENST00000429629 DCAF1Q9Y4B6 1507 aa29.68■■■□□ 2.34
GARNL3-204ENST00000429629 RB1CC1Q8TDY2 1594 aa29.62■■■□□ 2.33
GARNL3-204ENST00000429629 SCRIBQ14160 1630 aa28.71■■■□□ 2.19
GARNL3-204ENST00000429629 PABPN1Q86U42 306 aaKnown RBP eCLIP28.7■■■□□ 2.18
GARNL3-204ENST00000429629 UNC13AQ9UPW8 1703 aa28.68■■■□□ 2.18
GARNL3-204ENST00000429629 BICRAQ9NZM4 1560 aa28.67■■■□□ 2.18
GARNL3-204ENST00000429629 SHROOM4Q9ULL8 1493 aa28.59■■■□□ 2.17
GARNL3-204ENST00000429629 DNAJC5BQ9UF47 199 aa27.94■■■□□ 2.06
GARNL3-204ENST00000429629 EIF4G1Q04637 1599 aaKnown RBP27.9■■■□□ 2.06
GARNL3-204ENST00000429629 CECR2Q9BXF3 1484 aa27.76■■■□□ 2.03
GARNL3-204ENST00000429629 CC2D2AQ9P2K1 1620 aa27.67■■■□□ 2.02
GARNL3-204ENST00000429629 BAZ1AQ9NRL2 1556 aaPredicted RBP27.67■■■□□ 2.02
GARNL3-204ENST00000429629 SMARCA4P51532 1647 aa27.57■■■□□ 2
GARNL3-204ENST00000429629 NCAPD3P42695 1498 aa27.5■■□□□ 1.99
GARNL3-204ENST00000429629 MROH2BQ7Z745 1585 aa27.48■■□□□ 1.99
GARNL3-204ENST00000429629 ATAD2BQ9ULI0 1458 aa27.48■■□□□ 1.99
GARNL3-204ENST00000429629 SMARCA2P51531 1590 aa27.43■■□□□ 1.98
GARNL3-204ENST00000429629 PEG3Q9GZU2 1588 aa27.41■■□□□ 1.98
GARNL3-204ENST00000429629 RSF1Q96T23 1441 aaPredicted RBP27.37■■□□□ 1.97
GARNL3-204ENST00000429629 HMGXB3Q12766 1538 aa27.28■■□□□ 1.96
GARNL3-204ENST00000429629 BAZ1BQ9UIG0 1483 aaKnown RBP27.21■■□□□ 1.95
GARNL3-204ENST00000429629 WIZO95785 1651 aa27.09■■□□□ 1.93
GARNL3-204ENST00000429629 TOP2AP11388 1531 aaKnown RBP26.94■■□□□ 1.9
GARNL3-204ENST00000429629 SUPT5HO00267 1087 aaKnown RBP26.8■■□□□ 1.88
GARNL3-204ENST00000429629 CADPSQ9ULU8 1353 aa26.7■■□□□ 1.86
GARNL3-204ENST00000429629 CCDC88BA6NC98 1476 aa26.67■■□□□ 1.86
GARNL3-204ENST00000429629 LAMC3Q9Y6N6 1575 aa26.61■■□□□ 1.85
GARNL3-204ENST00000429629 CFTRP13569 1480 aa26.57■■□□□ 1.84
GARNL3-204ENST00000429629 NESP48681 1621 aa26.54■■□□□ 1.84
GARNL3-204ENST00000429629 PDS5BQ9NTI5 1447 aa26.52■■□□□ 1.84
GARNL3-204ENST00000429629 ERCC6Q03468 1493 aa26.39■■□□□ 1.82
GARNL3-204ENST00000429629 FANCD2Q9BXW9 1451 aa26.3■■□□□ 1.8
GARNL3-204ENST00000429629 CEP164Q9UPV0 1460 aa26.22■■□□□ 1.79
GARNL3-204ENST00000429629 MRC2Q9UBG0 1479 aa26.14■■□□□ 1.78
GARNL3-204ENST00000429629 KIF21AQ7Z4S6 1674 aa26.11■■□□□ 1.77
GARNL3-204ENST00000429629 CUX2O14529 1486 aa26.11■■□□□ 1.77
GARNL3-204ENST00000429629 PRDM2Q13029 1718 aa26.08■■□□□ 1.77
GARNL3-204ENST00000429629 THOC2Q8NI27 1593 aaKnown RBP26.06■■□□□ 1.76
GARNL3-204ENST00000429629 ABCC8Q09428 1581 aa26.03■■□□□ 1.76
GARNL3-204ENST00000429629 WDR62O43379 1518 aa26.02■■□□□ 1.76
GARNL3-204ENST00000429629 URB2Q14146 1524 aaKnown RBP25.98■■□□□ 1.75
GARNL3-204ENST00000429629 TOPBP1Q92547 1522 aa25.88■■□□□ 1.73
GARNL3-204ENST00000429629 DNMBPQ6XZF7 1577 aa25.86■■□□□ 1.73
GARNL3-204ENST00000429629 WRNQ14191 1432 aaPredicted RBP eCLIP25.78■■□□□ 1.72
GARNL3-204ENST00000429629 CUX1P39880 1505 aa25.77■■□□□ 1.72
GARNL3-204ENST00000429629 IFT140Q96RY7 1462 aa25.72■■□□□ 1.71
GARNL3-204ENST00000429629 POLA1P09884 1462 aaPredicted RBP25.69■■□□□ 1.7
GARNL3-204ENST00000429629 SOGA1O94964 1423 aa25.65■■□□□ 1.7
GARNL3-204ENST00000429629 FGD5Q6ZNL6 1462 aa25.64■■□□□ 1.69
GARNL3-204ENST00000429629 TOP2BQ02880 1626 aa25.62■■□□□ 1.69
GARNL3-204ENST00000429629 BIVM-ERCC5R4GMW8 1640 aa25.56■■□□□ 1.68
GARNL3-204ENST00000429629 SYNJ1O43426 1573 aa25.56■■□□□ 1.68
GARNL3-204ENST00000429629 TARBP1Q13395 1621 aaKnown RBP25.54■■□□□ 1.68
GARNL3-204ENST00000429629 RAD54L2Q9Y4B4 1467 aa25.53■■□□□ 1.68
GARNL3-204ENST00000429629 ABCA10Q8WWZ4 1543 aa25.48■■□□□ 1.67
GARNL3-204ENST00000429629 ZNF608Q9ULD9 1512 aaPredicted RBP25.48■■□□□ 1.67
GARNL3-204ENST00000429629 WDR97A6NE52 1622 aa25.45■■□□□ 1.66
GARNL3-204ENST00000429629 TDRD9Q8NDG6 1382 aaKnown RBP25.44■■□□□ 1.66
GARNL3-204ENST00000429629 AQRO60306 1485 aaKnown RBP eCLIP25.41■■□□□ 1.66
GARNL3-204ENST00000429629 TRIM41Q8WV44 630 aa25.4■■□□□ 1.66
GARNL3-204ENST00000429629 GAPVD1Q14C86 1478 aa25.33■■□□□ 1.65
GARNL3-204ENST00000429629 EIF4G3O43432 1585 aaKnown RBP25.31■■□□□ 1.64
GARNL3-204ENST00000429629 GRIN2BQ13224 1484 aa25.31■■□□□ 1.64
GARNL3-204ENST00000429629 CHIC1Q5VXU3 224 aa25.27■■□□□ 1.64
GARNL3-204ENST00000429629 KIF27Q86VH2 1401 aa25.26■■□□□ 1.63
GARNL3-204ENST00000429629 ABCA5Q8WWZ7 1642 aa25.23■■□□□ 1.63
GARNL3-204ENST00000429629 MAGI1Q96QZ7 1491 aaPredicted RBP25.21■■□□□ 1.63
GARNL3-204ENST00000429629 ERICH3Q5RHP9 1530 aa25.17■■□□□ 1.62
GARNL3-204ENST00000429629 IGF1RP08069 1367 aa25.16■■□□□ 1.62
GARNL3-204ENST00000429629 OSCARQ8IYS5 282 aa25.15■■□□□ 1.62
GARNL3-204ENST00000429629 SNAPC4Q5SXM2 1469 aa25.15■■□□□ 1.62
GARNL3-204ENST00000429629 CHMP7Q8WUX9 453 aaPredicted RBP25.12■■□□□ 1.61
GARNL3-204ENST00000429629 SYNJ2O15056 1496 aa25.1■■□□□ 1.61
GARNL3-204ENST00000429629 FHAD1B1AJZ9 1412 aa25.1■■□□□ 1.61
GARNL3-204ENST00000429629 FBLN2P98095 1184 aa25.05■■□□□ 1.6
GARNL3-204ENST00000429629 DNAJC5Q9H3Z4 198 aa25.05■■□□□ 1.6
GARNL3-204ENST00000429629 PBRM1Q86U86 1689 aa25.02■■□□□ 1.6
GARNL3-204ENST00000429629 EEA1Q15075 1411 aa25.01■■□□□ 1.59
GARNL3-204ENST00000429629 CARMIL1Q5VZK9 1371 aa24.98■■□□□ 1.59
GARNL3-204ENST00000429629 RUSC2Q8N2Y8 1516 aa24.97■■□□□ 1.59
GARNL3-204ENST00000429629 ADAMTS12P58397 1594 aa24.97■■□□□ 1.59
GARNL3-204ENST00000429629 GRIN2AQ12879 1464 aa24.94■■□□□ 1.58
GARNL3-204ENST00000429629 CSRNP3Q8WYN3 585 aa24.93■■□□□ 1.58
GARNL3-204ENST00000429629 CUL7Q14999 1698 aa24.9■■□□□ 1.58
GARNL3-204ENST00000429629 NUP160Q12769 1436 aa24.88■■□□□ 1.57
GARNL3-204ENST00000429629 PRXQ9BXM0 1461 aa24.84■■□□□ 1.57
GARNL3-204ENST00000429629 CHD1O14646 1710 aa24.83■■□□□ 1.57
GARNL3-204ENST00000429629 RAPGEF2Q9Y4G8 1499 aa24.83■■□□□ 1.57
GARNL3-204ENST00000429629 CLASP1Q7Z460 1538 aa24.76■■□□□ 1.55
GARNL3-204ENST00000429629 KIAA0586Q9BVV6 1533 aa24.73■■□□□ 1.55
GARNL3-204ENST00000429629 FAM9AQ8IZU1 332 aaPredicted RBP24.72■■□□□ 1.55
GARNL3-204ENST00000429629 CEP170Q5SW79 1584 aa24.71■■□□□ 1.55
GARNL3-204ENST00000429629 JPH4Q96JJ6 628 aa24.69■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms