RNA–Protein interactions for RNA: ENST00000423998.1

GTF3C2-204, Transcript of general transcription factor IIIC subunit 2, humanhuman

TSL 5

Gene GTF3C2, Length 828 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C2-204ENST00000423998 NISCHQ9Y2I1 1504 aa32.79■■■□□ 2.84
GTF3C2-204ENST00000423998 CCDC180Q9P1Z9 1646 aa29.08■■■□□ 2.25
GTF3C2-204ENST00000423998 ABCC9O60706 1549 aa28.26■■■□□ 2.11
GTF3C2-204ENST00000423998 DCAF8L2P0C7V8 631 aa27.5■■□□□ 1.99
GTF3C2-204ENST00000423998 NACADO15069 1562 aa27.4■■□□□ 1.98
GTF3C2-204ENST00000423998 RB1CC1Q8TDY2 1594 aa27.38■■□□□ 1.97
GTF3C2-204ENST00000423998 MYO15BQ96JP2 1530 aa27.32■■□□□ 1.96
GTF3C2-204ENST00000423998 ZCCHC6Q5VYS8 1495 aaKnown RBP27.3■■□□□ 1.96
GTF3C2-204ENST00000423998 DCAF1Q9Y4B6 1507 aa27.21■■□□□ 1.95
GTF3C2-204ENST00000423998 PABPN1Q86U42 306 aaKnown RBP eCLIP26.47■■□□□ 1.83
GTF3C2-204ENST00000423998 UNC13AQ9UPW8 1703 aa26.46■■□□□ 1.83
GTF3C2-204ENST00000423998 SCRIBQ14160 1630 aa26.43■■□□□ 1.82
GTF3C2-204ENST00000423998 SHROOM4Q9ULL8 1493 aa26.36■■□□□ 1.81
GTF3C2-204ENST00000423998 BICRAQ9NZM4 1560 aa26.33■■□□□ 1.8
GTF3C2-204ENST00000423998 EIF4G1Q04637 1599 aaKnown RBP25.73■■□□□ 1.71
GTF3C2-204ENST00000423998 DNAJC5BQ9UF47 199 aa25.72■■□□□ 1.71
GTF3C2-204ENST00000423998 CC2D2AQ9P2K1 1620 aa25.55■■□□□ 1.68
GTF3C2-204ENST00000423998 BAZ1AQ9NRL2 1556 aaPredicted RBP25.47■■□□□ 1.67
GTF3C2-204ENST00000423998 CECR2Q9BXF3 1484 aa25.45■■□□□ 1.66
GTF3C2-204ENST00000423998 SMARCA4P51532 1647 aa25.35■■□□□ 1.65
GTF3C2-204ENST00000423998 SMARCA2P51531 1590 aa25.31■■□□□ 1.64
GTF3C2-204ENST00000423998 NCAPD3P42695 1498 aa25.28■■□□□ 1.64
GTF3C2-204ENST00000423998 ATAD2BQ9ULI0 1458 aa25.23■■□□□ 1.63
GTF3C2-204ENST00000423998 MROH2BQ7Z745 1585 aa25.18■■□□□ 1.62
GTF3C2-204ENST00000423998 PEG3Q9GZU2 1588 aa25.15■■□□□ 1.62
GTF3C2-204ENST00000423998 HMGXB3Q12766 1538 aa25.11■■□□□ 1.61
GTF3C2-204ENST00000423998 BAZ1BQ9UIG0 1483 aaKnown RBP25.09■■□□□ 1.61
GTF3C2-204ENST00000423998 RSF1Q96T23 1441 aaPredicted RBP25.03■■□□□ 1.6
GTF3C2-204ENST00000423998 WIZO95785 1651 aa24.88■■□□□ 1.57
GTF3C2-204ENST00000423998 TOP2AP11388 1531 aaKnown RBP24.73■■□□□ 1.55
GTF3C2-204ENST00000423998 SUPT5HO00267 1087 aaKnown RBP24.6■■□□□ 1.53
GTF3C2-204ENST00000423998 CADPSQ9ULU8 1353 aa24.57■■□□□ 1.52
GTF3C2-204ENST00000423998 LAMC3Q9Y6N6 1575 aa24.57■■□□□ 1.52
GTF3C2-204ENST00000423998 PDS5BQ9NTI5 1447 aa24.51■■□□□ 1.51
GTF3C2-204ENST00000423998 ERCC6Q03468 1493 aa24.5■■□□□ 1.51
GTF3C2-204ENST00000423998 CCDC88BA6NC98 1476 aa24.44■■□□□ 1.5
GTF3C2-204ENST00000423998 NESP48681 1621 aa24.42■■□□□ 1.5
GTF3C2-204ENST00000423998 CFTRP13569 1480 aa24.4■■□□□ 1.5
GTF3C2-204ENST00000423998 FANCD2Q9BXW9 1451 aa24.22■■□□□ 1.47
GTF3C2-204ENST00000423998 CEP164Q9UPV0 1460 aa24.2■■□□□ 1.47
GTF3C2-204ENST00000423998 CUX2O14529 1486 aa24.18■■□□□ 1.46
GTF3C2-204ENST00000423998 MRC2Q9UBG0 1479 aa24.12■■□□□ 1.45
GTF3C2-204ENST00000423998 KIF21AQ7Z4S6 1674 aa24.11■■□□□ 1.45
GTF3C2-204ENST00000423998 PRDM2Q13029 1718 aa24.1■■□□□ 1.45
GTF3C2-204ENST00000423998 ABCC8Q09428 1581 aa24.04■■□□□ 1.44
GTF3C2-204ENST00000423998 THOC2Q8NI27 1593 aaKnown RBP24.01■■□□□ 1.43
GTF3C2-204ENST00000423998 WDR62O43379 1518 aa23.97■■□□□ 1.43
GTF3C2-204ENST00000423998 URB2Q14146 1524 aaKnown RBP23.86■■□□□ 1.41
GTF3C2-204ENST00000423998 DNMBPQ6XZF7 1577 aa23.81■■□□□ 1.4
GTF3C2-204ENST00000423998 TOPBP1Q92547 1522 aa23.8■■□□□ 1.4
GTF3C2-204ENST00000423998 IFT140Q96RY7 1462 aa23.72■■□□□ 1.39
GTF3C2-204ENST00000423998 WRNQ14191 1432 aaPredicted RBP eCLIP23.67■■□□□ 1.38
GTF3C2-204ENST00000423998 SOGA1O94964 1423 aa23.63■■□□□ 1.37
GTF3C2-204ENST00000423998 CUX1P39880 1505 aa23.62■■□□□ 1.37
GTF3C2-204ENST00000423998 POLA1P09884 1462 aaPredicted RBP23.61■■□□□ 1.37
GTF3C2-204ENST00000423998 FGD5Q6ZNL6 1462 aa23.57■■□□□ 1.36
GTF3C2-204ENST00000423998 TOP2BQ02880 1626 aa23.52■■□□□ 1.36
GTF3C2-204ENST00000423998 WDR97A6NE52 1622 aa23.48■■□□□ 1.35
GTF3C2-204ENST00000423998 TARBP1Q13395 1621 aaKnown RBP23.48■■□□□ 1.35
GTF3C2-204ENST00000423998 BIVM-ERCC5R4GMW8 1640 aa23.48■■□□□ 1.35
GTF3C2-204ENST00000423998 RAD54L2Q9Y4B4 1467 aa23.46■■□□□ 1.35
GTF3C2-204ENST00000423998 ZNF608Q9ULD9 1512 aaPredicted RBP23.42■■□□□ 1.34
GTF3C2-204ENST00000423998 SYNJ1O43426 1573 aa23.41■■□□□ 1.34
GTF3C2-204ENST00000423998 TDRD9Q8NDG6 1382 aaKnown RBP23.4■■□□□ 1.34
GTF3C2-204ENST00000423998 ABCA10Q8WWZ4 1543 aa23.4■■□□□ 1.34
GTF3C2-204ENST00000423998 AQRO60306 1485 aaKnown RBP eCLIP23.38■■□□□ 1.332e-16■■■■■ 42.3
GTF3C2-204ENST00000423998 TRIM41Q8WV44 630 aa23.35■■□□□ 1.33
GTF3C2-204ENST00000423998 EIF4G3O43432 1585 aaKnown RBP23.35■■□□□ 1.33
GTF3C2-204ENST00000423998 GRIN2BQ13224 1484 aa23.33■■□□□ 1.33
GTF3C2-204ENST00000423998 GAPVD1Q14C86 1478 aa23.33■■□□□ 1.33
GTF3C2-204ENST00000423998 OSCARQ8IYS5 282 aa23.32■■□□□ 1.32
GTF3C2-204ENST00000423998 DNAJC5Q9H3Z4 198 aa23.28■■□□□ 1.32
GTF3C2-204ENST00000423998 MAGI1Q96QZ7 1491 aaPredicted RBP23.25■■□□□ 1.31
GTF3C2-204ENST00000423998 CHMP7Q8WUX9 453 aaPredicted RBP23.25■■□□□ 1.31
GTF3C2-204ENST00000423998 KIF27Q86VH2 1401 aa23.25■■□□□ 1.31
GTF3C2-204ENST00000423998 FBLN2P98095 1184 aa23.24■■□□□ 1.31
GTF3C2-204ENST00000423998 ABCA5Q8WWZ7 1642 aa23.19■■□□□ 1.3
GTF3C2-204ENST00000423998 SNAPC4Q5SXM2 1469 aa23.17■■□□□ 1.3
GTF3C2-204ENST00000423998 ERICH3Q5RHP9 1530 aa23.16■■□□□ 1.3
GTF3C2-204ENST00000423998 SYNJ2O15056 1496 aa23.14■■□□□ 1.29
GTF3C2-204ENST00000423998 PBRM1Q86U86 1689 aa23.1■■□□□ 1.29
GTF3C2-204ENST00000423998 FHAD1B1AJZ9 1412 aa23.1■■□□□ 1.29
GTF3C2-204ENST00000423998 IGF1RP08069 1367 aa23.04■■□□□ 1.28
GTF3C2-204ENST00000423998 CHIC1Q5VXU3 224 aa23.01■■□□□ 1.27
GTF3C2-204ENST00000423998 CHD1O14646 1710 aa22.97■■□□□ 1.27
GTF3C2-204ENST00000423998 GRIN2AQ12879 1464 aa22.97■■□□□ 1.27
GTF3C2-204ENST00000423998 CARMIL1Q5VZK9 1371 aa22.96■■□□□ 1.27
GTF3C2-204ENST00000423998 EEA1Q15075 1411 aa22.96■■□□□ 1.27
GTF3C2-204ENST00000423998 ADAMTS12P58397 1594 aa22.96■■□□□ 1.27
GTF3C2-204ENST00000423998 CUL7Q14999 1698 aa22.95■■□□□ 1.26
GTF3C2-204ENST00000423998 CSRNP3Q8WYN3 585 aa22.87■■□□□ 1.25
GTF3C2-204ENST00000423998 NUP160Q12769 1436 aa22.85■■□□□ 1.25
GTF3C2-204ENST00000423998 RAPGEF2Q9Y4G8 1499 aa22.82■■□□□ 1.24
GTF3C2-204ENST00000423998 RUSC2Q8N2Y8 1516 aa22.8■■□□□ 1.24
GTF3C2-204ENST00000423998 CLASP1Q7Z460 1538 aa22.78■■□□□ 1.24
GTF3C2-204ENST00000423998 JPH4Q96JJ6 628 aa22.75■■□□□ 1.23
GTF3C2-204ENST00000423998 KIAA0586Q9BVV6 1533 aa22.75■■□□□ 1.23
GTF3C2-204ENST00000423998 CEP170Q5SW79 1584 aa22.72■■□□□ 1.23
GTF3C2-204ENST00000423998 ARHGEF11O15085 1522 aa22.72■■□□□ 1.23
GTF3C2-204ENST00000423998 PRXQ9BXM0 1461 aa22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms