RNA–Protein interactions for RNA: ENST00000423335.2

SHISA9-201, Transcript of shisa family member 9, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHISA9, Length 4,043 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA9-201ENST00000423335 NISCHQ9Y2I1 1504 aa28.11■■■□□ 2.09
SHISA9-201ENST00000423335 DCAF8L2P0C7V8 631 aa27.7■■■□□ 2.03
SHISA9-201ENST00000423335 SHROOM4Q9ULL8 1493 aa26.2■■□□□ 1.79
SHISA9-201ENST00000423335 SUPT5HO00267 1087 aaKnown RBP26.01■■□□□ 1.75
SHISA9-201ENST00000423335 EHMT2Q96KQ7 1210 aa25.02■■□□□ 1.6
SHISA9-201ENST00000423335 FAM9AQ8IZU1 332 aaPredicted RBP24.47■■□□□ 1.51
SHISA9-201ENST00000423335 ABCC9O60706 1549 aa24.47■■□□□ 1.51
SHISA9-201ENST00000423335 PCGF6Q9BYE7 350 aa24.38■■□□□ 1.49
SHISA9-201ENST00000423335 PABPN1Q86U42 306 aaKnown RBP eCLIP24.11■■□□□ 1.45
SHISA9-201ENST00000423335 RANGAP1P46060 587 aaPredicted RBP23.97■■□□□ 1.43
SHISA9-201ENST00000423335 TTBK1Q5TCY1 1321 aaPredicted RBP23.93■■□□□ 1.42
SHISA9-201ENST00000423335 TRIM41Q8WV44 630 aa23.92■■□□□ 1.42
SHISA9-201ENST00000423335 HRCP23327 699 aa23.58■■□□□ 1.37
SHISA9-201ENST00000423335 CHIC1Q5VXU3 224 aa23.55■■□□□ 1.36
SHISA9-201ENST00000423335 LOC105371045A0A1W2PR82 267 aa23.54■■□□□ 1.36
SHISA9-201ENST00000423335 PPARGC1BQ86YN6 1023 aaKnown RBP23.51■■□□□ 1.35
SHISA9-201ENST00000423335 UBTFP17480 764 aaKnown RBP23.46■■□□□ 1.35
SHISA9-201ENST00000423335 APLP2Q06481 763 aa23.41■■□□□ 1.34
SHISA9-201ENST00000423335 ATP1B4Q9UN42 357 aaPredicted RBP23.37■■□□□ 1.33
SHISA9-201ENST00000423335 ZCCHC6Q5VYS8 1495 aaKnown RBP23.27■■□□□ 1.32
SHISA9-201ENST00000423335 CCER1Q8TC90 406 aaPredicted RBP23.2■■□□□ 1.3
SHISA9-201ENST00000423335 SCRIBQ14160 1630 aa23.19■■□□□ 1.3
SHISA9-201ENST00000423335 TRIM26Q12899 539 aaPredicted RBP23.18■■□□□ 1.3
SHISA9-201ENST00000423335 ZEB1P37275 1124 aaPredicted RBP23.15■■□□□ 1.3
SHISA9-201ENST00000423335 CCDC180Q9P1Z9 1646 aa23.11■■□□□ 1.29
SHISA9-201ENST00000423335 CENPBP07199 599 aaPredicted RBP22.86■■□□□ 1.25
SHISA9-201ENST00000423335 YTHDC1Q96MU7 727 aaKnown RBP22.86■■□□□ 1.25
SHISA9-201ENST00000423335 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.7■■□□□ 1.22
SHISA9-201ENST00000423335 ITGAEP38570 1179 aa22.69■■□□□ 1.22
SHISA9-201ENST00000423335 HNRNPUL2Q1KMD3 747 aaKnown RBP22.66■■□□□ 1.22
SHISA9-201ENST00000423335 PELP1Q8IZL8 1130 aaKnown RBP22.66■■□□□ 1.22
SHISA9-201ENST00000423335 RB1CC1Q8TDY2 1594 aa22.55■■□□□ 1.2
SHISA9-201ENST00000423335 FBLN2P98095 1184 aa22.54■■□□□ 1.2
SHISA9-201ENST00000423335 MYO15BQ96JP2 1530 aa22.43■■□□□ 1.18
SHISA9-201ENST00000423335 CECR2Q9BXF3 1484 aa22.42■■□□□ 1.18
SHISA9-201ENST00000423335 RSF1Q96T23 1441 aaPredicted RBP22.42■■□□□ 1.18
SHISA9-201ENST00000423335 P3H3Q8IVL6 736 aa22.41■■□□□ 1.18
SHISA9-201ENST00000423335 NACADO15069 1562 aa22.4■■□□□ 1.18
SHISA9-201ENST00000423335 DIEXFQ68CQ4 756 aaKnown RBP22.35■■□□□ 1.17
SHISA9-201ENST00000423335 ARID3CA6NKF2 412 aa22.35■■□□□ 1.17
SHISA9-201ENST00000423335 CSRNP3Q8WYN3 585 aa22.32■■□□□ 1.16
SHISA9-201ENST00000423335 MYT1LQ9UL68 1186 aa22.23■■□□□ 1.15
SHISA9-201ENST00000423335 GTF3C3Q9Y5Q9 886 aa22.18■■□□□ 1.14
SHISA9-201ENST00000423335 DCAF1Q9Y4B6 1507 aa22.11■■□□□ 1.13
SHISA9-201ENST00000423335 FAM50AQ14320 339 aaKnown RBP22.09■■□□□ 1.13
SHISA9-201ENST00000423335 MROH2BQ7Z745 1585 aa21.99■■□□□ 1.11
SHISA9-201ENST00000423335 BAZ1BQ9UIG0 1483 aaKnown RBP21.98■■□□□ 1.11
SHISA9-201ENST00000423335 ACIN1Q9UKV3 1341 aaKnown RBP21.95■■□□□ 1.1
SHISA9-201ENST00000423335 SCAF1Q9H7N4 1312 aaKnown RBP21.9■■□□□ 1.1
SHISA9-201ENST00000423335 NEFLP07196 543 aa21.9■■□□□ 1.1
SHISA9-201ENST00000423335 CNGB1Q14028 1251 aaPredicted RBP21.88■■□□□ 1.09
SHISA9-201ENST00000423335 BAZ1AQ9NRL2 1556 aaPredicted RBP21.86■■□□□ 1.09
SHISA9-201ENST00000423335 ERICH6Q7L0X2 663 aa21.84■■□□□ 1.09
SHISA9-201ENST00000423335 NEUROD1Q13562 356 aa21.83■■□□□ 1.09
SHISA9-201ENST00000423335 ZNF316A6NFI3 1004 aaPredicted RBP21.82■■□□□ 1.08
SHISA9-201ENST00000423335 POLR3GLQ9BT43 218 aa21.82■■□□□ 1.08
SHISA9-201ENST00000423335 MYT1Q01538 1121 aa21.81■■□□□ 1.08
SHISA9-201ENST00000423335 TRIM52Q96A61 297 aa21.74■■□□□ 1.07
SHISA9-201ENST00000423335 WRNQ14191 1432 aaPredicted RBP eCLIP21.74■■□□□ 1.07
SHISA9-201ENST00000423335 ZNF777Q9ULD5 760 aaPredicted RBP21.73■■□□□ 1.07
SHISA9-201ENST00000423335 BCANQ96GW7 911 aa21.68■■□□□ 1.06
SHISA9-201ENST00000423335 CHMP7Q8WUX9 453 aaPredicted RBP21.68■■□□□ 1.06
SHISA9-201ENST00000423335 CCDC88BA6NC98 1476 aa21.66■■□□□ 1.06
SHISA9-201ENST00000423335 WIZO95785 1651 aa21.65■■□□□ 1.06
SHISA9-201ENST00000423335 SOGA1O94964 1423 aa21.57■■□□□ 1.04
SHISA9-201ENST00000423335 ABCC8Q09428 1581 aa21.56■■□□□ 1.04
SHISA9-201ENST00000423335 ZNF326Q5BKZ1 582 aaKnown RBP21.52■■□□□ 1.03
SHISA9-201ENST00000423335 CHIC2Q9UKJ5 165 aa21.49■■□□□ 1.03
SHISA9-201ENST00000423335 ERCC6Q03468 1493 aa21.48■■□□□ 1.03
SHISA9-201ENST00000423335 CLIP1P30622 1438 aa21.46■■□□□ 1.03
SHISA9-201ENST00000423335 MIER1Q8N108 512 aa21.45■■□□□ 1.03
SHISA9-201ENST00000423335 ATAD2BQ9ULI0 1458 aa21.44■■□□□ 1.02
SHISA9-201ENST00000423335 TDRD9Q8NDG6 1382 aaKnown RBP21.38■■□□□ 1.01
SHISA9-201ENST00000423335 KIF27Q86VH2 1401 aa21.38■■□□□ 1.01
SHISA9-201ENST00000423335 CEP162Q5TB80 1403 aa21.37■■□□□ 1.01
SHISA9-201ENST00000423335 CDK11AQ9UQ88 783 aaPredicted RBP21.37■■□□□ 1.01
SHISA9-201ENST00000423335 KCNH8Q96L42 1107 aa21.36■■□□□ 1.01
SHISA9-201ENST00000423335 CUX2O14529 1486 aa21.34■■□□□ 1.01
SHISA9-201ENST00000423335 SMARCA2P51531 1590 aa21.33■■□□□ 1.01
SHISA9-201ENST00000423335 DNAJC5BQ9UF47 199 aa21.31■■□□□ 1
SHISA9-201ENST00000423335 SLC4A1APQ9BWU0 796 aaKnown RBP21.3■■□□□ 1
SHISA9-201ENST00000423335 SMARCA4P51532 1647 aa21.3■■□□□ 1
SHISA9-201ENST00000423335 PLPPR3Q6T4P5 718 aa21.3■■□□□ 1
SHISA9-201ENST00000423335 GOLGA3Q08378 1498 aa21.27■■□□□ 1
SHISA9-201ENST00000423335 NPM1P06748 294 aaKnown RBP eCLIP21.26■□□□□ 0.99
SHISA9-201ENST00000423335 MTUS2Q5JR59 1369 aa21.26■□□□□ 0.99
SHISA9-201ENST00000423335 CADPSQ9ULU8 1353 aa21.25■□□□□ 0.99
SHISA9-201ENST00000423335 TOP2AP11388 1531 aaKnown RBP21.24■□□□□ 0.99
SHISA9-201ENST00000423335 CARMIL1Q5VZK9 1371 aa21.23■□□□□ 0.99
SHISA9-201ENST00000423335 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.2■□□□□ 0.99
SHISA9-201ENST00000423335 EEA1Q15075 1411 aa21.2■□□□□ 0.98
SHISA9-201ENST00000423335 ANP32CO43423 234 aa21.2■□□□□ 0.98
SHISA9-201ENST00000423335 DDX10Q13206 875 aaKnown RBP21.19■□□□□ 0.98
SHISA9-201ENST00000423335 RRP7BPQ9NSQ0 103 aa21.18■□□□□ 0.98
SHISA9-201ENST00000423335 RUSC2Q8N2Y8 1516 aa21.18■□□□□ 0.98
SHISA9-201ENST00000423335 TNIKQ9UKE5 1360 aa21.17■□□□□ 0.98
SHISA9-201ENST00000423335 SENP3Q9H4L4 574 aaPredicted RBP21.16■□□□□ 0.98
SHISA9-201ENST00000423335 HIRIP3Q9BW71 556 aaPredicted RBP21.14■□□□□ 0.98
SHISA9-201ENST00000423335 CEP164Q9UPV0 1460 aa21.14■□□□□ 0.97
SHISA9-201ENST00000423335 FKBP8Q14318 412 aa21.14■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 115.5 ms