RNA–Protein interactions for RNA: ENST00000411690.2

LINC00396-201, long intergenic non-protein coding RNA 396, humanhuman

TSL 3 BASIC

Gene LINC00396, Length 439 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00396-201ENST00000411690 AEBP2Q6ZN18 517 aaPredicted RBP23.43■■□□□ 1.34
LINC00396-201ENST00000411690 CHIC1Q5VXU3 224 aa21.77■■□□□ 1.08
LINC00396-201ENST00000411690 SENP3Q9H4L4 574 aaPredicted RBP19.92■□□□□ 0.78
LINC00396-201ENST00000411690 PHF23Q9BUL5 403 aaPredicted RBP19.65■□□□□ 0.74
LINC00396-201ENST00000411690 FOXD1Q16676 465 aa18.7■□□□□ 0.58
LINC00396-201ENST00000411690 POTEDQ86YR6 584 aa17.92■□□□□ 0.46
LINC00396-201ENST00000411690 MSH5O43196 834 aa17.55■□□□□ 0.4
LINC00396-201ENST00000411690 PIAS4Q8N2W9 510 aaPredicted RBP17.35■□□□□ 0.37
LINC00396-201ENST00000411690 PPP6R1Q9UPN7 881 aa17.21■□□□□ 0.35
LINC00396-201ENST00000411690 PLPPR3Q6T4P5 718 aa17.17■□□□□ 0.34
LINC00396-201ENST00000411690 ADRA2BP18089 450 aa17.11■□□□□ 0.33
LINC00396-201ENST00000411690 NISCHQ9Y2I1 1504 aa16.46■□□□□ 0.23
LINC00396-201ENST00000411690 MAPK8IP2Q13387 824 aaPredicted RBP15.86■□□□□ 0.13
LINC00396-201ENST00000411690 DMRT2Q9Y5R5 561 aa15.76■□□□□ 0.11
LINC00396-201ENST00000411690 ABCC9O60706 1549 aa15.59■□□□□ 0.09
LINC00396-201ENST00000411690 SCAF1Q9H7N4 1312 aaKnown RBP15.49■□□□□ 0.07
LINC00396-201ENST00000411690 CACNB1Q02641 598 aaPredicted RBP15.34■□□□□ 0.05
LINC00396-201ENST00000411690 DCAF8L1A6NGE4 600 aa15.15■□□□□ 0.02
LINC00396-201ENST00000411690 DNAJC5BQ9UF47 199 aa15.15■□□□□ 0.02
LINC00396-201ENST00000411690 PPP4R3CPQ6ZMV5 832 aa15.03■□□□□ -0
LINC00396-201ENST00000411690 HOXD11P31277 338 aaPredicted RBP15.02■□□□□ -0
LINC00396-201ENST00000411690 RNF39Q9H2S5 420 aa15.01□□□□□ -0.01
LINC00396-201ENST00000411690 CCDC180Q9P1Z9 1646 aa14.99□□□□□ -0.01
LINC00396-201ENST00000411690 CNKSR2Q8WXI2 1034 aa14.8□□□□□ -0.04
LINC00396-201ENST00000411690 RNF216Q9NWF9 866 aaPredicted RBP14.78□□□□□ -0.04
LINC00396-201ENST00000411690 C1QBPQ07021 282 aaKnown RBP14.7□□□□□ -0.06
LINC00396-201ENST00000411690 RB1CC1Q8TDY2 1594 aa14.57□□□□□ -0.08
LINC00396-201ENST00000411690 PABPN1Q86U42 306 aaKnown RBP eCLIP14.46□□□□□ -0.09
LINC00396-201ENST00000411690 NACADO15069 1562 aa14.34□□□□□ -0.11
LINC00396-201ENST00000411690 DNAJC5Q9H3Z4 198 aa14.33□□□□□ -0.12
LINC00396-201ENST00000411690 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.29□□□□□ -0.12
LINC00396-201ENST00000411690 DCAF8L2P0C7V8 631 aa14.25□□□□□ -0.13
LINC00396-201ENST00000411690 NCBP3Q53F19 620 aaKnown RBP14.24□□□□□ -0.13
LINC00396-201ENST00000411690 UNC13AQ9UPW8 1703 aa14.19□□□□□ -0.14
LINC00396-201ENST00000411690 NPM3O75607 178 aaKnown RBP14.16□□□□□ -0.14
LINC00396-201ENST00000411690 BICRAQ9NZM4 1560 aa14.15□□□□□ -0.14
LINC00396-201ENST00000411690 CECR2Q9BXF3 1484 aa14.11□□□□□ -0.15
LINC00396-201ENST00000411690 CC2D2AQ9P2K1 1620 aa14.04□□□□□ -0.16
LINC00396-201ENST00000411690 U3KPZ7 1027 aaPredicted RBP14.02□□□□□ -0.17
LINC00396-201ENST00000411690 SPINK5Q9NQ38 1064 aaPredicted RBP13.96□□□□□ -0.17
LINC00396-201ENST00000411690 POTEHQ6S545 545 aa13.94□□□□□ -0.18
LINC00396-201ENST00000411690 MYO15BQ96JP2 1530 aa13.94□□□□□ -0.18
LINC00396-201ENST00000411690 DSG3P32926 999 aa13.92□□□□□ -0.18
LINC00396-201ENST00000411690 SHROOM4Q9ULL8 1493 aa13.9□□□□□ -0.18
LINC00396-201ENST00000411690 CAPN15O75808 1086 aa13.88□□□□□ -0.19
LINC00396-201ENST00000411690 EIF4G1Q04637 1599 aaKnown RBP13.86□□□□□ -0.19
LINC00396-201ENST00000411690 CUX2O14529 1486 aa13.67□□□□□ -0.22
LINC00396-201ENST00000411690 SLC4A2P04920 1241 aa13.65□□□□□ -0.22
LINC00396-201ENST00000411690 SCRIBQ14160 1630 aa13.64□□□□□ -0.23
LINC00396-201ENST00000411690 ABCB7O75027 752 aa13.58□□□□□ -0.24
LINC00396-201ENST00000411690 TRHP20396 242 aaPredicted RBP13.58□□□□□ -0.24
LINC00396-201ENST00000411690 KCNA4P22459 653 aa13.56□□□□□ -0.24
LINC00396-201ENST00000411690 DCAF1Q9Y4B6 1507 aa13.54□□□□□ -0.24
LINC00396-201ENST00000411690 ERCC6Q03468 1493 aa13.52□□□□□ -0.25
LINC00396-201ENST00000411690 ZCCHC6Q5VYS8 1495 aaKnown RBP13.51□□□□□ -0.25
LINC00396-201ENST00000411690 TRIM41Q8WV44 630 aa13.49□□□□□ -0.25
LINC00396-201ENST00000411690 ZNF219Q9P2Y4 722 aaPredicted RBP13.48□□□□□ -0.25
LINC00396-201ENST00000411690 APLP2Q06481 763 aa13.4□□□□□ -0.26
LINC00396-201ENST00000411690 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.33□□□□□ -0.28
LINC00396-201ENST00000411690 HNRNPUL2Q1KMD3 747 aaKnown RBP13.33□□□□□ -0.28
LINC00396-201ENST00000411690 SAMD1Q6SPF0 538 aaPredicted RBP13.27□□□□□ -0.29
LINC00396-201ENST00000411690 NCAPD3P42695 1498 aa13.26□□□□□ -0.29
LINC00396-201ENST00000411690 NESP48681 1621 aa13.22□□□□□ -0.29
LINC00396-201ENST00000411690 RBM42Q9BTD8 480 aaKnown RBP13.2□□□□□ -0.3
LINC00396-201ENST00000411690 THOC2Q8NI27 1593 aaKnown RBP13.16□□□□□ -0.3
LINC00396-201ENST00000411690 CHRDL2Q6WN34 429 aa13.15□□□□□ -0.3
LINC00396-201ENST00000411690 ATAD2BQ9ULI0 1458 aa13.13□□□□□ -0.31
LINC00396-201ENST00000411690 POLA2Q14181 598 aa13.12□□□□□ -0.31
LINC00396-201ENST00000411690 HMGXB3Q12766 1538 aa13.08□□□□□ -0.32
LINC00396-201ENST00000411690 SMARCA2P51531 1590 aa13.07□□□□□ -0.32
LINC00396-201ENST00000411690 MYCNP04198 464 aaPredicted RBP13.04□□□□□ -0.32
LINC00396-201ENST00000411690 LAMC3Q9Y6N6 1575 aa13.03□□□□□ -0.32
LINC00396-201ENST00000411690 PDS5BQ9NTI5 1447 aa13.01□□□□□ -0.33
LINC00396-201ENST00000411690 KIF21AQ7Z4S6 1674 aa13□□□□□ -0.33
LINC00396-201ENST00000411690 OSCARQ8IYS5 282 aa13□□□□□ -0.33
LINC00396-201ENST00000411690 BAZ1BQ9UIG0 1483 aaKnown RBP12.97□□□□□ -0.33
LINC00396-201ENST00000411690 SMARCA4P51532 1647 aa12.95□□□□□ -0.34
LINC00396-201ENST00000411690 BAZ1AQ9NRL2 1556 aaPredicted RBP12.95□□□□□ -0.34
LINC00396-201ENST00000411690 MRC2Q9UBG0 1479 aa12.91□□□□□ -0.34
LINC00396-201ENST00000411690 ATF5Q9Y2D1 282 aaPredicted RBP12.89□□□□□ -0.35
LINC00396-201ENST00000411690 WDR62O43379 1518 aa12.88□□□□□ -0.35
LINC00396-201ENST00000411690 SP7Q8TDD2 431 aaPredicted RBP12.86□□□□□ -0.35
LINC00396-201ENST00000411690 CADPSQ9ULU8 1353 aa12.84□□□□□ -0.35
LINC00396-201ENST00000411690 AKT1S1Q96B36 256 aa12.84□□□□□ -0.35
LINC00396-201ENST00000411690 RIMBP3CA6NJZ7 1639 aa12.82□□□□□ -0.36
LINC00396-201ENST00000411690 RIMBP3BA6NNM3 1639 aa12.82□□□□□ -0.36
LINC00396-201ENST00000411690 RIMBP3Q9UFD9 1639 aa12.82□□□□□ -0.36
LINC00396-201ENST00000411690 PEG3Q9GZU2 1588 aa12.81□□□□□ -0.36
LINC00396-201ENST00000411690 REM2Q8IYK8 340 aaPredicted RBP12.77□□□□□ -0.37
LINC00396-201ENST00000411690 PIP4P2Q8N4L2 257 aa12.77□□□□□ -0.37
LINC00396-201ENST00000411690 CEP164Q9UPV0 1460 aa12.75□□□□□ -0.37
LINC00396-201ENST00000411690 CYB5RLQ6IPT4 315 aa12.74□□□□□ -0.37
LINC00396-201ENST00000411690 ARHGEF11O15085 1522 aa12.73□□□□□ -0.37
LINC00396-201ENST00000411690 ZBTB12Q9Y330 459 aaPredicted RBP12.72□□□□□ -0.37
LINC00396-201ENST00000411690 FOXD4L1Q9NU39 408 aa12.71□□□□□ -0.37
LINC00396-201ENST00000411690 MROH2BQ7Z745 1585 aa12.69□□□□□ -0.38
LINC00396-201ENST00000411690 FANCD2Q9BXW9 1451 aa12.68□□□□□ -0.38
LINC00396-201ENST00000411690 PITPNM1O00562 1244 aa12.67□□□□□ -0.38
LINC00396-201ENST00000411690 SLC4A1APQ9BWU0 796 aaKnown RBP12.65□□□□□ -0.38
LINC00396-201ENST00000411690 HAX1O00165 279 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 219.1 ms