RNA–Protein interactions for RNA: ENST00000411243.1

RNU4-61P-201, Transcript of RNA, U4 small nuclear 61, pseudogene, humanhuman

BASIC

Gene RNU4-61P, Length 107 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-61P-201ENST00000411243 AEBP2Q6ZN18 517 aaPredicted RBP24.42■■□□□ 1.5
RNU4-61P-201ENST00000411243 CHIC1Q5VXU3 224 aa22.79■■□□□ 1.24
RNU4-61P-201ENST00000411243 SENP3Q9H4L4 574 aaPredicted RBP21■□□□□ 0.95
RNU4-61P-201ENST00000411243 PHF23Q9BUL5 403 aaPredicted RBP20.54■□□□□ 0.88
RNU4-61P-201ENST00000411243 POTEDQ86YR6 584 aa20■□□□□ 0.79
RNU4-61P-201ENST00000411243 FOXD1Q16676 465 aa19.66■□□□□ 0.74
RNU4-61P-201ENST00000411243 MSH5O43196 834 aa18.8■□□□□ 0.6
RNU4-61P-201ENST00000411243 PIAS4Q8N2W9 510 aaPredicted RBP18.13■□□□□ 0.49
RNU4-61P-201ENST00000411243 PPP6R1Q9UPN7 881 aa17.62■□□□□ 0.41
RNU4-61P-201ENST00000411243 ADRA2BP18089 450 aa17.49■□□□□ 0.39
RNU4-61P-201ENST00000411243 PLPPR3Q6T4P5 718 aa17.31■□□□□ 0.36
RNU4-61P-201ENST00000411243 CACNB1Q02641 598 aaPredicted RBP16.68■□□□□ 0.26
RNU4-61P-201ENST00000411243 DMRT2Q9Y5R5 561 aa16.5■□□□□ 0.23
RNU4-61P-201ENST00000411243 MAPK8IP2Q13387 824 aaPredicted RBP16.35■□□□□ 0.21
RNU4-61P-201ENST00000411243 SCAF1Q9H7N4 1312 aaKnown RBP16■□□□□ 0.15
RNU4-61P-201ENST00000411243 RNF39Q9H2S5 420 aa15.96■□□□□ 0.15
RNU4-61P-201ENST00000411243 DCAF8L1A6NGE4 600 aa15.78■□□□□ 0.12
RNU4-61P-201ENST00000411243 C1QBPQ07021 282 aaKnown RBP15.66■□□□□ 0.1
RNU4-61P-201ENST00000411243 HOXD11P31277 338 aaPredicted RBP15.52■□□□□ 0.08
RNU4-61P-201ENST00000411243 POTEHQ6S545 545 aa15.47■□□□□ 0.07
RNU4-61P-201ENST00000411243 DNAJC5BQ9UF47 199 aa15.21■□□□□ 0.03
RNU4-61P-201ENST00000411243 RNF216Q9NWF9 866 aaPredicted RBP15.13■□□□□ 0.01
RNU4-61P-201ENST00000411243 PPP4R3CPQ6ZMV5 832 aa15.03■□□□□ -0
RNU4-61P-201ENST00000411243 CNKSR2Q8WXI2 1034 aa14.99□□□□□ -0.01
RNU4-61P-201ENST00000411243 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.72□□□□□ -0.05
RNU4-61P-201ENST00000411243 DSG3P32926 999 aa14.59□□□□□ -0.07
RNU4-61P-201ENST00000411243 CAPN15O75808 1086 aa14.41□□□□□ -0.1
RNU4-61P-201ENST00000411243 SPINK5Q9NQ38 1064 aaPredicted RBP14.41□□□□□ -0.1
RNU4-61P-201ENST00000411243 U3KPZ7 1027 aaPredicted RBP14.35□□□□□ -0.11
RNU4-61P-201ENST00000411243 NCBP3Q53F19 620 aaKnown RBP14.16□□□□□ -0.14
RNU4-61P-201ENST00000411243 SP7Q8TDD2 431 aaPredicted RBP14.05□□□□□ -0.16
RNU4-61P-201ENST00000411243 CHRDL2Q6WN34 429 aa14.04□□□□□ -0.16
RNU4-61P-201ENST00000411243 ABCB7O75027 752 aa14□□□□□ -0.17
RNU4-61P-201ENST00000411243 NPM3O75607 178 aaKnown RBP13.97□□□□□ -0.17
RNU4-61P-201ENST00000411243 RBM42Q9BTD8 480 aaKnown RBP13.96□□□□□ -0.17
RNU4-61P-201ENST00000411243 TRHP20396 242 aaPredicted RBP13.93□□□□□ -0.18
RNU4-61P-201ENST00000411243 ZNF219Q9P2Y4 722 aaPredicted RBP13.93□□□□□ -0.18
RNU4-61P-201ENST00000411243 APLP2Q06481 763 aa13.83□□□□□ -0.2
RNU4-61P-201ENST00000411243 SLC4A2P04920 1241 aa13.61□□□□□ -0.23
RNU4-61P-201ENST00000411243 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.59□□□□□ -0.23
RNU4-61P-201ENST00000411243 HNRNPUL2Q1KMD3 747 aaKnown RBP13.59□□□□□ -0.23
RNU4-61P-201ENST00000411243 PIP4P2Q8N4L2 257 aa13.5□□□□□ -0.25
RNU4-61P-201ENST00000411243 SAMD1Q6SPF0 538 aaPredicted RBP13.47□□□□□ -0.25
RNU4-61P-201ENST00000411243 HAX1O00165 279 aa13.46□□□□□ -0.25
RNU4-61P-201ENST00000411243 AKT1S1Q96B36 256 aa13.43□□□□□ -0.26
RNU4-61P-201ENST00000411243 POLA2Q14181 598 aa13.34□□□□□ -0.27
RNU4-61P-201ENST00000411243 REM2Q8IYK8 340 aaPredicted RBP13.29□□□□□ -0.28
RNU4-61P-201ENST00000411243 FXR2P51116 673 aaKnown RBP eCLIP13.26□□□□□ -0.29
RNU4-61P-201ENST00000411243 EVX2Q03828 476 aa13.25□□□□□ -0.29
RNU4-61P-201ENST00000411243 PITPNM1O00562 1244 aa13.18□□□□□ -0.3
RNU4-61P-201ENST00000411243 LHX8Q68G74 356 aa13.14□□□□□ -0.31
RNU4-61P-201ENST00000411243 PLSCR2Q9NRY7 297 aa13.09□□□□□ -0.31
RNU4-61P-201ENST00000411243 ZBTB12Q9Y330 459 aaPredicted RBP13.05□□□□□ -0.32
RNU4-61P-201ENST00000411243 OSCARQ8IYS5 282 aa13□□□□□ -0.33
RNU4-61P-201ENST00000411243 MYCNP04198 464 aaPredicted RBP12.96□□□□□ -0.33
RNU4-61P-201ENST00000411243 GABBR2O75899 941 aa12.9□□□□□ -0.34
RNU4-61P-201ENST00000411243 C19orf67A6NJJ6 358 aa12.88□□□□□ -0.35
RNU4-61P-201ENST00000411243 KCNA4P22459 653 aa12.83□□□□□ -0.36
RNU4-61P-201ENST00000411243 PRKAR2AP13861 404 aaKnown RBP12.79□□□□□ -0.36
RNU4-61P-201ENST00000411243 ATF5Q9Y2D1 282 aaPredicted RBP12.71□□□□□ -0.37
RNU4-61P-201ENST00000411243 POTEIP0CG38 1075 aa12.64□□□□□ -0.39
RNU4-61P-201ENST00000411243 SPDYE1Q8NFV5 336 aaPredicted RBP12.57□□□□□ -0.4
RNU4-61P-201ENST00000411243 SPDYE2BA6NHP3 402 aa12.56□□□□□ -0.4
RNU4-61P-201ENST00000411243 SPDYE6P0CI01 402 aa12.56□□□□□ -0.4
RNU4-61P-201ENST00000411243 SPDYE2Q495Y8 402 aa12.56□□□□□ -0.4
RNU4-61P-201ENST00000411243 CLEC11AQ9Y240 323 aa12.54□□□□□ -0.4
RNU4-61P-201ENST00000411243 POTEMA6NI47 508 aa12.44□□□□□ -0.42
RNU4-61P-201ENST00000411243 CHADLQ6NUI6 762 aa12.42□□□□□ -0.42
RNU4-61P-201ENST00000411243 CLCN6P51797 869 aa12.39□□□□□ -0.43
RNU4-61P-201ENST00000411243 POTEGQ6S5H5 508 aa12.36□□□□□ -0.43
RNU4-61P-201ENST00000411243 OTUD5Q96G74 571 aa12.35□□□□□ -0.43
RNU4-61P-201ENST00000411243 CD44P16070 742 aaKnown RBP12.34□□□□□ -0.43
RNU4-61P-201ENST00000411243 DCBLD2Q96PD2 775 aa12.33□□□□□ -0.44
RNU4-61P-201ENST00000411243 SSUH2Q9Y2M2 353 aa12.31□□□□□ -0.44
RNU4-61P-201ENST00000411243 PCDH10Q9P2E7 1040 aa12.3□□□□□ -0.44
RNU4-61P-201ENST00000411243 FOXD4L1Q9NU39 408 aa12.29□□□□□ -0.44
RNU4-61P-201ENST00000411243 FBLN2P98095 1184 aa12.28□□□□□ -0.44
RNU4-61P-201ENST00000411243 PRR29P0C7W0 189 aa12.21□□□□□ -0.45
RNU4-61P-201ENST00000411243 ZNF692Q9BU19 519 aaPredicted RBP12.2□□□□□ -0.46
RNU4-61P-201ENST00000411243 POTEB2H3BUK9 544 aa12.19□□□□□ -0.46
RNU4-61P-201ENST00000411243 FARP1Q9Y4F1 1045 aaPredicted RBP12.18□□□□□ -0.46
RNU4-61P-201ENST00000411243 ZNF579Q8NAF0 562 aaKnown RBP12.15□□□□□ -0.46
RNU4-61P-201ENST00000411243 MKRN4PQ13434 485 aaPredicted RBP12.1□□□□□ -0.47
RNU4-61P-201ENST00000411243 GALR2O43603 387 aaPredicted RBP12.03□□□□□ -0.48
RNU4-61P-201ENST00000411243 ATXN8OSP0DMR3 200 aa12.02□□□□□ -0.49
RNU4-61P-201ENST00000411243 PABPN1Q86U42 306 aaKnown RBP eCLIP12.01□□□□□ -0.49
RNU4-61P-201ENST00000411243 LCE2DQ5TA82 110 aaPredicted RBP12□□□□□ -0.49
RNU4-61P-201ENST00000411243 ZRANB1Q9UGI0 708 aa11.99□□□□□ -0.49
RNU4-61P-201ENST00000411243 SLC4A1APQ9BWU0 796 aaKnown RBP11.9□□□□□ -0.5
RNU4-61P-201ENST00000411243 PELP1Q8IZL8 1130 aaKnown RBP11.89□□□□□ -0.51
RNU4-61P-201ENST00000411243 POTEJP0CG39 1038 aa11.86□□□□□ -0.51
RNU4-61P-201ENST00000411243 MAMSTRQ6ZN01 415 aa11.84□□□□□ -0.51
RNU4-61P-201ENST00000411243 FAM163AQ96GL9 167 aaPredicted RBP11.82□□□□□ -0.52
RNU4-61P-201ENST00000411243 METRNQ9UJH8 293 aa11.82□□□□□ -0.52
RNU4-61P-201ENST00000411243 ZBTB22O15209 634 aa11.8□□□□□ -0.52
RNU4-61P-201ENST00000411243 PHF12Q96QT6 1004 aa11.77□□□□□ -0.53
RNU4-61P-201ENST00000411243 SLC39A7Q92504 469 aa11.75□□□□□ -0.53
RNU4-61P-201ENST00000411243 C7P10643 843 aa11.74□□□□□ -0.53
RNU4-61P-201ENST00000411243 ASTLQ6HA08 431 aaPredicted RBP11.74□□□□□ -0.53
RNU4-61P-201ENST00000411243 CREBZFQ9NS37 354 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms