RNA–Protein interactions for RNA: ENST00000410940.1

RNU4-78P-201, Transcript of RNA, U4 small nuclear 78, pseudogene, humanhuman

BASIC

Gene RNU4-78P, Length 126 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-78P-201ENST00000410940 AEBP2Q6ZN18 517 aaPredicted RBP17.82■□□□□ 0.44
RNU4-78P-201ENST00000410940 CHIC1Q5VXU3 224 aa16.63■□□□□ 0.25
RNU4-78P-201ENST00000410940 SENP3Q9H4L4 574 aaPredicted RBP15.27■□□□□ 0.04
RNU4-78P-201ENST00000410940 PHF23Q9BUL5 403 aaPredicted RBP15.01□□□□□ -0.01
RNU4-78P-201ENST00000410940 FOXD1Q16676 465 aa14.32□□□□□ -0.12
RNU4-78P-201ENST00000410940 POTEDQ86YR6 584 aa14.18□□□□□ -0.14
RNU4-78P-201ENST00000410940 MSH5O43196 834 aa13.59□□□□□ -0.23
RNU4-78P-201ENST00000410940 PIAS4Q8N2W9 510 aaPredicted RBP13.23□□□□□ -0.29
RNU4-78P-201ENST00000410940 PPP6R1Q9UPN7 881 aa12.97□□□□□ -0.33
RNU4-78P-201ENST00000410940 ADRA2BP18089 450 aa12.9□□□□□ -0.34
RNU4-78P-201ENST00000410940 PLPPR3Q6T4P5 718 aa12.86□□□□□ -0.35
RNU4-78P-201ENST00000410940 DMRT2Q9Y5R5 561 aa12.03□□□□□ -0.48
RNU4-78P-201ENST00000410940 MAPK8IP2Q13387 824 aaPredicted RBP12.01□□□□□ -0.49
RNU4-78P-201ENST00000410940 CACNB1Q02641 598 aaPredicted RBP11.99□□□□□ -0.49
RNU4-78P-201ENST00000410940 SCAF1Q9H7N4 1312 aaKnown RBP11.8□□□□□ -0.52
RNU4-78P-201ENST00000410940 DCAF8L1A6NGE4 600 aa11.57□□□□□ -0.56
RNU4-78P-201ENST00000410940 RNF39Q9H2S5 420 aa11.55□□□□□ -0.56
RNU4-78P-201ENST00000410940 HOXD11P31277 338 aaPredicted RBP11.38□□□□□ -0.59
RNU4-78P-201ENST00000410940 C1QBPQ07021 282 aaKnown RBP11.35□□□□□ -0.59
RNU4-78P-201ENST00000410940 PPP4R3CPQ6ZMV5 832 aa11.2□□□□□ -0.62
RNU4-78P-201ENST00000410940 RNF216Q9NWF9 866 aaPredicted RBP11.15□□□□□ -0.62
RNU4-78P-201ENST00000410940 CNKSR2Q8WXI2 1034 aa11.11□□□□□ -0.63
RNU4-78P-201ENST00000410940 DNAJC5BQ9UF47 199 aa11.09□□□□□ -0.63
RNU4-78P-201ENST00000410940 POTEHQ6S545 545 aa11□□□□□ -0.65
RNU4-78P-201ENST00000410940 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.83□□□□□ -0.68
RNU4-78P-201ENST00000410940 DSG3P32926 999 aa10.64□□□□□ -0.71
RNU4-78P-201ENST00000410940 NCBP3Q53F19 620 aaKnown RBP10.6□□□□□ -0.71
RNU4-78P-201ENST00000410940 CAPN15O75808 1086 aa10.57□□□□□ -0.72
RNU4-78P-201ENST00000410940 SPINK5Q9NQ38 1064 aaPredicted RBP10.57□□□□□ -0.72
RNU4-78P-201ENST00000410940 U3KPZ7 1027 aaPredicted RBP10.56□□□□□ -0.72
RNU4-78P-201ENST00000410940 NPM3O75607 178 aaKnown RBP10.46□□□□□ -0.73
RNU4-78P-201ENST00000410940 ABCB7O75027 752 aa10.28□□□□□ -0.76
RNU4-78P-201ENST00000410940 TRHP20396 242 aaPredicted RBP10.28□□□□□ -0.76
RNU4-78P-201ENST00000410940 ZNF219Q9P2Y4 722 aaPredicted RBP10.23□□□□□ -0.77
RNU4-78P-201ENST00000410940 APLP2Q06481 763 aa10.18□□□□□ -0.78
RNU4-78P-201ENST00000410940 RBM42Q9BTD8 480 aaKnown RBP10.16□□□□□ -0.78
RNU4-78P-201ENST00000410940 CHRDL2Q6WN34 429 aa10.15□□□□□ -0.78
RNU4-78P-201ENST00000410940 SLC4A2P04920 1241 aa10.13□□□□□ -0.79
RNU4-78P-201ENST00000410940 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.06□□□□□ -0.8
RNU4-78P-201ENST00000410940 HNRNPUL2Q1KMD3 747 aaKnown RBP10.06□□□□□ -0.8
RNU4-78P-201ENST00000410940 SP7Q8TDD2 431 aaPredicted RBP10.06□□□□□ -0.8
RNU4-78P-201ENST00000410940 SAMD1Q6SPF0 538 aaPredicted RBP9.97□□□□□ -0.81
RNU4-78P-201ENST00000410940 POLA2Q14181 598 aa9.89□□□□□ -0.83
RNU4-78P-201ENST00000410940 AKT1S1Q96B36 256 aa9.81□□□□□ -0.84
RNU4-78P-201ENST00000410940 PIP4P2Q8N4L2 257 aa9.79□□□□□ -0.84
RNU4-78P-201ENST00000410940 KCNA4P22459 653 aa9.78□□□□□ -0.84
RNU4-78P-201ENST00000410940 HAX1O00165 279 aa9.77□□□□□ -0.85
RNU4-78P-201ENST00000410940 REM2Q8IYK8 340 aaPredicted RBP9.73□□□□□ -0.85
RNU4-78P-201ENST00000410940 MYCNP04198 464 aaPredicted RBP9.67□□□□□ -0.86
RNU4-78P-201ENST00000410940 EHMT2Q96KQ7 1210 aa9.67□□□□□ -0.86
RNU4-78P-201ENST00000410940 FXR2P51116 673 aaKnown RBP eCLIP9.65□□□□□ -0.86
RNU4-78P-201ENST00000410940 PITPNM1O00562 1244 aa9.63□□□□□ -0.87
RNU4-78P-201ENST00000410940 EVX2Q03828 476 aa9.62□□□□□ -0.87
RNU4-78P-201ENST00000410940 ZBTB12Q9Y330 459 aaPredicted RBP9.61□□□□□ -0.87
RNU4-78P-201ENST00000410940 OSCARQ8IYS5 282 aa9.58□□□□□ -0.88
RNU4-78P-201ENST00000410940 ATF5Q9Y2D1 282 aaPredicted RBP9.51□□□□□ -0.89
RNU4-78P-201ENST00000410940 LHX8Q68G74 356 aa9.44□□□□□ -0.9
RNU4-78P-201ENST00000410940 PRKAR2AP13861 404 aaKnown RBP9.38□□□□□ -0.91
RNU4-78P-201ENST00000410940 C19orf67A6NJJ6 358 aa9.36□□□□□ -0.91
RNU4-78P-201ENST00000410940 GABBR2O75899 941 aa9.36□□□□□ -0.91
RNU4-78P-201ENST00000410940 SLC4A1APQ9BWU0 796 aaKnown RBP9.35□□□□□ -0.91
RNU4-78P-201ENST00000410940 CSRNP3Q8WYN3 585 aa9.33□□□□□ -0.92
RNU4-78P-201ENST00000410940 SPDYE2BA6NHP3 402 aa9.28□□□□□ -0.92
RNU4-78P-201ENST00000410940 SPDYE6P0CI01 402 aa9.28□□□□□ -0.92
RNU4-78P-201ENST00000410940 SPDYE2Q495Y8 402 aa9.28□□□□□ -0.92
RNU4-78P-201ENST00000410940 PLSCR2Q9NRY7 297 aa9.28□□□□□ -0.92
RNU4-78P-201ENST00000410940 FOXD4L1Q9NU39 408 aa9.28□□□□□ -0.92
RNU4-78P-201ENST00000410940 CLEC11AQ9Y240 323 aa9.28□□□□□ -0.92
RNU4-78P-201ENST00000410940 SPDYE1Q8NFV5 336 aaPredicted RBP9.26□□□□□ -0.93
RNU4-78P-201ENST00000410940 POTEIP0CG38 1075 aa9.17□□□□□ -0.94
RNU4-78P-201ENST00000410940 FBLN2P98095 1184 aa9.16□□□□□ -0.94
RNU4-78P-201ENST00000410940 CHADLQ6NUI6 762 aa9.16□□□□□ -0.94
RNU4-78P-201ENST00000410940 ZNF692Q9BU19 519 aaPredicted RBP9.1□□□□□ -0.95
RNU4-78P-201ENST00000410940 SSUH2Q9Y2M2 353 aa9.1□□□□□ -0.95
RNU4-78P-201ENST00000410940 ATXN8OSP0DMR3 200 aa9.05□□□□□ -0.96
RNU4-78P-201ENST00000410940 PRR29P0C7W0 189 aa9.04□□□□□ -0.96
RNU4-78P-201ENST00000410940 CD44P16070 742 aaKnown RBP9.04□□□□□ -0.96
RNU4-78P-201ENST00000410940 MKRN4PQ13434 485 aaPredicted RBP9.04□□□□□ -0.96
RNU4-78P-201ENST00000410940 CLCN6P51797 869 aa9.02□□□□□ -0.97
RNU4-78P-201ENST00000410940 DCBLD2Q96PD2 775 aa8.99□□□□□ -0.97
RNU4-78P-201ENST00000410940 SLC24A1O60721 1099 aa8.98□□□□□ -0.97
RNU4-78P-201ENST00000410940 ZBTB22O15209 634 aa8.97□□□□□ -0.97
RNU4-78P-201ENST00000410940 FARP1Q9Y4F1 1045 aaPredicted RBP8.96□□□□□ -0.98
RNU4-78P-201ENST00000410940 PABPN1Q86U42 306 aaKnown RBP eCLIP8.94□□□□□ -0.98
RNU4-78P-201ENST00000410940 OTUD5Q96G74 571 aa8.93□□□□□ -0.98
RNU4-78P-201ENST00000410940 POTEMA6NI47 508 aa8.92□□□□□ -0.98
RNU4-78P-201ENST00000410940 AMER1Q5JTC6 1135 aaPredicted RBP8.9□□□□□ -0.98
RNU4-78P-201ENST00000410940 ZNF579Q8NAF0 562 aaKnown RBP8.87□□□□□ -0.99
RNU4-78P-201ENST00000410940 POTEB2H3BUK9 544 aa8.86□□□□□ -0.99
RNU4-78P-201ENST00000410940 POTEGQ6S5H5 508 aa8.86□□□□□ -0.99
RNU4-78P-201ENST00000410940 ZRANB1Q9UGI0 708 aa8.83□□□□□ -1
RNU4-78P-201ENST00000410940 GALR2O43603 387 aaPredicted RBP8.81□□□□□ -1
RNU4-78P-201ENST00000410940 PCDH10Q9P2E7 1040 aa8.79□□□□□ -1
RNU4-78P-201ENST00000410940 PELP1Q8IZL8 1130 aaKnown RBP8.7□□□□□ -1.02
RNU4-78P-201ENST00000410940 RTN4Q9NQC3 1192 aaKnown RBP8.7□□□□□ -1.02
RNU4-78P-201ENST00000410940 CREBZFQ9NS37 354 aa8.69□□□□□ -1.02
RNU4-78P-201ENST00000410940 PHF12Q96QT6 1004 aa8.66□□□□□ -1.02
RNU4-78P-201ENST00000410940 PAK3O75914 559 aaPredicted RBP8.64□□□□□ -1.03
RNU4-78P-201ENST00000410940 POTEJP0CG39 1038 aa8.63□□□□□ -1.03
RNU4-78P-201ENST00000410940 LCE2DQ5TA82 110 aaPredicted RBP8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms