RNA–Protein interactions for RNA: ENST00000409606.5

R3HDM1-203, Transcript of R3H domain containing 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene R3HDM1, Length 3,673 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM1-203ENST00000409606 NISCHQ9Y2I1 1504 aa12.36□□□□□ -0.43
R3HDM1-203ENST00000409606 CCDC180Q9P1Z9 1646 aa11.22□□□□□ -0.61
R3HDM1-203ENST00000409606 DCAF1Q9Y4B6 1507 aa10.56□□□□□ -0.72
R3HDM1-203ENST00000409606 MYO15BQ96JP2 1530 aa10.55□□□□□ -0.72
R3HDM1-203ENST00000409606 ZCCHC6Q5VYS8 1495 aaKnown RBP10.46□□□□□ -0.73
R3HDM1-203ENST00000409606 NACADO15069 1562 aa10.24□□□□□ -0.77
R3HDM1-203ENST00000409606 UNC13AQ9UPW8 1703 aa10.2□□□□□ -0.78
R3HDM1-203ENST00000409606 RB1CC1Q8TDY2 1594 aa10.07□□□□□ -0.8
R3HDM1-203ENST00000409606 SHROOM4Q9ULL8 1493 aa10.02□□□□□ -0.81
R3HDM1-203ENST00000409606 BICRAQ9NZM4 1560 aa9.95□□□□□ -0.82
R3HDM1-203ENST00000409606 ABCC9O60706 1549 aa9.9□□□□□ -0.82
R3HDM1-203ENST00000409606 PEG3Q9GZU2 1588 aa9.76□□□□□ -0.85
R3HDM1-203ENST00000409606 SCRIBQ14160 1630 aa9.74□□□□□ -0.85
R3HDM1-203ENST00000409606 SMARCA4P51532 1647 aa9.6□□□□□ -0.87
R3HDM1-203ENST00000409606 BAZ1AQ9NRL2 1556 aaPredicted RBP9.54□□□□□ -0.88
R3HDM1-203ENST00000409606 SMARCA2P51531 1590 aa9.52□□□□□ -0.89
R3HDM1-203ENST00000409606 EIF4G1Q04637 1599 aaKnown RBP9.51□□□□□ -0.89
R3HDM1-203ENST00000409606 HMGXB3Q12766 1538 aa9.49□□□□□ -0.89
R3HDM1-203ENST00000409606 PRDM2Q13029 1718 aa9.49□□□□□ -0.89
R3HDM1-203ENST00000409606 MROH2BQ7Z745 1585 aa9.44□□□□□ -0.9
R3HDM1-203ENST00000409606 TOP2AP11388 1531 aaKnown RBP9.41□□□□□ -0.9
R3HDM1-203ENST00000409606 CECR2Q9BXF3 1484 aa9.4□□□□□ -0.9
R3HDM1-203ENST00000409606 WIZO95785 1651 aa9.4□□□□□ -0.9
R3HDM1-203ENST00000409606 RSF1Q96T23 1441 aaPredicted RBP9.39□□□□□ -0.91
R3HDM1-203ENST00000409606 DNAJC5BQ9UF47 199 aa9.36□□□□□ -0.91
R3HDM1-203ENST00000409606 NCAPD3P42695 1498 aa9.36□□□□□ -0.91
R3HDM1-203ENST00000409606 CC2D2AQ9P2K1 1620 aa9.33□□□□□ -0.92
R3HDM1-203ENST00000409606 ATAD2BQ9ULI0 1458 aa9.32□□□□□ -0.92
R3HDM1-203ENST00000409606 DNAJC5Q9H3Z4 198 aa9.22□□□□□ -0.93
R3HDM1-203ENST00000409606 BIVM-ERCC5R4GMW8 1640 aa9.14□□□□□ -0.95
R3HDM1-203ENST00000409606 LAMC3Q9Y6N6 1575 aa9.13□□□□□ -0.95
R3HDM1-203ENST00000409606 BAZ1BQ9UIG0 1483 aaKnown RBP9.12□□□□□ -0.95
R3HDM1-203ENST00000409606 CCDC88BA6NC98 1476 aa9.11□□□□□ -0.95
R3HDM1-203ENST00000409606 CUX2O14529 1486 aa9.1□□□□□ -0.95
R3HDM1-203ENST00000409606 WDR97A6NE52 1622 aa9.1□□□□□ -0.95
R3HDM1-203ENST00000409606 CFTRP13569 1480 aa9.09□□□□□ -0.95
R3HDM1-203ENST00000409606 DCAF8L2P0C7V8 631 aa9.04□□□□□ -0.96
R3HDM1-203ENST00000409606 PABPN1Q86U42 306 aaKnown RBP eCLIP9.03□□□□□ -0.96
R3HDM1-203ENST00000409606 KIF21AQ7Z4S6 1674 aa9.02□□□□□ -0.96
R3HDM1-203ENST00000409606 THOC2Q8NI27 1593 aaKnown RBP9.02□□□□□ -0.97
R3HDM1-203ENST00000409606 TOP2BQ02880 1626 aa9□□□□□ -0.97
R3HDM1-203ENST00000409606 WDR62O43379 1518 aa8.95□□□□□ -0.98
R3HDM1-203ENST00000409606 SYNJ1O43426 1573 aa8.92□□□□□ -0.98
R3HDM1-203ENST00000409606 DNMBPQ6XZF7 1577 aa8.92□□□□□ -0.98
R3HDM1-203ENST00000409606 TARBP1Q13395 1621 aaKnown RBP8.91□□□□□ -0.98
R3HDM1-203ENST00000409606 CUX1P39880 1505 aa8.88□□□□□ -0.99
R3HDM1-203ENST00000409606 ABCA5Q8WWZ7 1642 aa8.88□□□□□ -0.99
R3HDM1-203ENST00000409606 CADPSQ9ULU8 1353 aa8.88□□□□□ -0.99
R3HDM1-203ENST00000409606 ABCC8Q09428 1581 aa8.84□□□□□ -0.99
R3HDM1-203ENST00000409606 URB2Q14146 1524 aaKnown RBP8.82□□□□□ -1
R3HDM1-203ENST00000409606 PBRM1Q86U86 1689 aa8.81□□□□□ -1
R3HDM1-203ENST00000409606 FANCD2Q9BXW9 1451 aa8.79□□□□□ -1
R3HDM1-203ENST00000409606 NESP48681 1621 aa8.79□□□□□ -1
R3HDM1-203ENST00000409606 TOPBP1Q92547 1522 aa8.78□□□□□ -1
R3HDM1-203ENST00000409606 KIF21BO75037 1637 aa8.77□□□□□ -1
R3HDM1-203ENST00000409606 ABCA10Q8WWZ4 1543 aa8.77□□□□□ -1.01
R3HDM1-203ENST00000409606 MRC2Q9UBG0 1479 aa8.77□□□□□ -1.01
R3HDM1-203ENST00000409606 CUL7Q14999 1698 aa8.75□□□□□ -1.01
R3HDM1-203ENST00000409606 CEP164Q9UPV0 1460 aa8.75□□□□□ -1.01
R3HDM1-203ENST00000409606 PDS5BQ9NTI5 1447 aa8.73□□□□□ -1.01
R3HDM1-203ENST00000409606 ERCC6Q03468 1493 aa8.71□□□□□ -1.01
R3HDM1-203ENST00000409606 ERICH3Q5RHP9 1530 aa8.71□□□□□ -1.01
R3HDM1-203ENST00000409606 WRNQ14191 1432 aaPredicted RBP eCLIP8.71□□□□□ -1.02
R3HDM1-203ENST00000409606 POLA1P09884 1462 aaPredicted RBP8.7□□□□□ -1.02
R3HDM1-203ENST00000409606 CTTNBP2Q8WZ74 1663 aa8.68□□□□□ -1.02
R3HDM1-203ENST00000409606 EIF4G3O43432 1585 aaKnown RBP8.68□□□□□ -1.02
R3HDM1-203ENST00000409606 EEA1Q15075 1411 aa8.67□□□□□ -1.02
R3HDM1-203ENST00000409606 ADAMTS12P58397 1594 aa8.67□□□□□ -1.02
R3HDM1-203ENST00000409606 FGD5Q6ZNL6 1462 aa8.67□□□□□ -1.02
R3HDM1-203ENST00000409606 SHROOM2Q13796 1616 aa8.65□□□□□ -1.03
R3HDM1-203ENST00000409606 IFT140Q96RY7 1462 aa8.64□□□□□ -1.03
R3HDM1-203ENST00000409606 PRXQ9BXM0 1461 aa8.64□□□□□ -1.03
R3HDM1-203ENST00000409606 SAMD9Q5K651 1589 aa8.59□□□□□ -1.03
R3HDM1-203ENST00000409606 SUPT5HO00267 1087 aaKnown RBP8.58□□□□□ -1.04
R3HDM1-203ENST00000409606 RUSC2Q8N2Y8 1516 aa8.57□□□□□ -1.04
R3HDM1-203ENST00000409606 CHIC1Q5VXU3 224 aa8.57□□□□□ -1.04
R3HDM1-203ENST00000409606 CHD1O14646 1710 aa8.55□□□□□ -1.04
R3HDM1-203ENST00000409606 CLASP1Q7Z460 1538 aa8.55□□□□□ -1.04
R3HDM1-203ENST00000409606 MAGI1Q96QZ7 1491 aaPredicted RBP8.54□□□□□ -1.04
R3HDM1-203ENST00000409606 LRRIQ1Q96JM4 1722 aa8.51□□□□□ -1.05
R3HDM1-203ENST00000409606 SOGA1O94964 1423 aa8.5□□□□□ -1.05
R3HDM1-203ENST00000409606 RAD54L2Q9Y4B4 1467 aa8.5□□□□□ -1.05
R3HDM1-203ENST00000409606 CEP170Q5SW79 1584 aa8.5□□□□□ -1.05
R3HDM1-203ENST00000409606 UGGT2Q9NYU1 1516 aa8.48□□□□□ -1.05
R3HDM1-203ENST00000409606 GRIN2BQ13224 1484 aa8.48□□□□□ -1.05
R3HDM1-203ENST00000409606 NUP160Q12769 1436 aa8.48□□□□□ -1.05
R3HDM1-203ENST00000409606 ZNF608Q9ULD9 1512 aaPredicted RBP8.48□□□□□ -1.05
R3HDM1-203ENST00000409606 GAPVD1Q14C86 1478 aa8.48□□□□□ -1.05
R3HDM1-203ENST00000409606 IGF1RP08069 1367 aa8.47□□□□□ -1.05
R3HDM1-203ENST00000409606 KIF27Q86VH2 1401 aa8.47□□□□□ -1.05
R3HDM1-203ENST00000409606 EFCAB5A4FU69 1503 aa8.46□□□□□ -1.05
R3HDM1-203ENST00000409606 CFAP43Q8NDM7 1665 aa8.45□□□□□ -1.06
R3HDM1-203ENST00000409606 SYNJ2O15056 1496 aa8.45□□□□□ -1.06
R3HDM1-203ENST00000409606 FHAD1B1AJZ9 1412 aa8.44□□□□□ -1.06
R3HDM1-203ENST00000409606 RAPGEF2Q9Y4G8 1499 aa8.42□□□□□ -1.06
R3HDM1-203ENST00000409606 GOLGA3Q08378 1498 aa8.42□□□□□ -1.06
R3HDM1-203ENST00000409606 GRIN2AQ12879 1464 aa8.42□□□□□ -1.06
R3HDM1-203ENST00000409606 MAP3K1Q13233 1512 aa8.41□□□□□ -1.06
R3HDM1-203ENST00000409606 KIAA0556O60303 1618 aa8.4□□□□□ -1.06
R3HDM1-203ENST00000409606 IQGAP2Q13576 1575 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms