RNA–Protein interactions for RNA: ENST00000409190.7

SYNC-202, Transcript of syncoilin, intermediate filament protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SYNC, Length 3,398 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNC-202ENST00000409190 NISCHQ9Y2I1 1504 aa33.28■■■□□ 2.92
SYNC-202ENST00000409190 SHROOM4Q9ULL8 1493 aa29.68■■■□□ 2.34
SYNC-202ENST00000409190 SUPT5HO00267 1087 aaKnown RBP29.3■■■□□ 2.28
SYNC-202ENST00000409190 DCAF8L2P0C7V8 631 aa28.81■■■□□ 2.2
SYNC-202ENST00000409190 CHIC1Q5VXU3 224 aa28.17■■■□□ 2.1
SYNC-202ENST00000409190 ZCCHC6Q5VYS8 1495 aaKnown RBP28.11■■■□□ 2.09
SYNC-202ENST00000409190 MYO15BQ96JP2 1530 aa28.09■■■□□ 2.09
SYNC-202ENST00000409190 PCGF6Q9BYE7 350 aa28.05■■■□□ 2.08
SYNC-202ENST00000409190 HRCP23327 699 aa27.85■■■□□ 2.05
SYNC-202ENST00000409190 LOC105371045A0A1W2PR82 267 aa27.75■■■□□ 2.03
SYNC-202ENST00000409190 PPARGC1BQ86YN6 1023 aaKnown RBP27.75■■■□□ 2.03
SYNC-202ENST00000409190 CCDC180Q9P1Z9 1646 aa27.64■■■□□ 2.01
SYNC-202ENST00000409190 EHMT2Q96KQ7 1210 aa27.39■■□□□ 1.98
SYNC-202ENST00000409190 FAM9AQ8IZU1 332 aaPredicted RBP27.24■■□□□ 1.95
SYNC-202ENST00000409190 TRIM26Q12899 539 aaPredicted RBP26.99■■□□□ 1.91
SYNC-202ENST00000409190 TRIM41Q8WV44 630 aa26.96■■□□□ 1.91
SYNC-202ENST00000409190 DCAF1Q9Y4B6 1507 aa26.95■■□□□ 1.91
SYNC-202ENST00000409190 SCRIBQ14160 1630 aa26.75■■□□□ 1.87
SYNC-202ENST00000409190 RSF1Q96T23 1441 aaPredicted RBP26.67■■□□□ 1.86
SYNC-202ENST00000409190 ABCC9O60706 1549 aa26.55■■□□□ 1.84
SYNC-202ENST00000409190 TTBK1Q5TCY1 1321 aaPredicted RBP26.51■■□□□ 1.83
SYNC-202ENST00000409190 RB1CC1Q8TDY2 1594 aa26.47■■□□□ 1.83
SYNC-202ENST00000409190 ZEB1P37275 1124 aaPredicted RBP26.35■■□□□ 1.81
SYNC-202ENST00000409190 CECR2Q9BXF3 1484 aa26.31■■□□□ 1.8
SYNC-202ENST00000409190 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.28■■□□□ 1.8
SYNC-202ENST00000409190 CCER1Q8TC90 406 aaPredicted RBP26.15■■□□□ 1.78
SYNC-202ENST00000409190 MROH2BQ7Z745 1585 aa26.1■■□□□ 1.77
SYNC-202ENST00000409190 SCAF1Q9H7N4 1312 aaKnown RBP26.06■■□□□ 1.76
SYNC-202ENST00000409190 WIZO95785 1651 aa25.96■■□□□ 1.75
SYNC-202ENST00000409190 UBTFP17480 764 aaKnown RBP25.8■■□□□ 1.72
SYNC-202ENST00000409190 ABCC8Q09428 1581 aa25.72■■□□□ 1.71
SYNC-202ENST00000409190 RANGAP1P46060 587 aaPredicted RBP25.71■■□□□ 1.71
SYNC-202ENST00000409190 NACADO15069 1562 aa25.71■■□□□ 1.71
SYNC-202ENST00000409190 NEUROD1Q13562 356 aa25.7■■□□□ 1.7
SYNC-202ENST00000409190 DIEXFQ68CQ4 756 aaKnown RBP25.69■■□□□ 1.7
SYNC-202ENST00000409190 CCDC88BA6NC98 1476 aa25.66■■□□□ 1.7
SYNC-202ENST00000409190 PABPN1Q86U42 306 aaKnown RBP eCLIP25.62■■□□□ 1.69
SYNC-202ENST00000409190 SOGA1O94964 1423 aa25.6■■□□□ 1.69
SYNC-202ENST00000409190 ACIN1Q9UKV3 1341 aaKnown RBP25.58■■□□□ 1.69
SYNC-202ENST00000409190 YTHDC1Q96MU7 727 aaKnown RBP25.57■■□□□ 1.68
SYNC-202ENST00000409190 HNRNPUL2Q1KMD3 747 aaKnown RBP25.55■■□□□ 1.68
SYNC-202ENST00000409190 CEP162Q5TB80 1403 aa25.53■■□□□ 1.68
SYNC-202ENST00000409190 GTF3C3Q9Y5Q9 886 aa25.53■■□□□ 1.68
SYNC-202ENST00000409190 BAZ1AQ9NRL2 1556 aaPredicted RBP25.5■■□□□ 1.67
SYNC-202ENST00000409190 CSRNP3Q8WYN3 585 aa25.5■■□□□ 1.67
SYNC-202ENST00000409190 RUSC2Q8N2Y8 1516 aa25.48■■□□□ 1.67
SYNC-202ENST00000409190 PELP1Q8IZL8 1130 aaKnown RBP25.45■■□□□ 1.66
SYNC-202ENST00000409190 CENPBP07199 599 aaPredicted RBP25.4■■□□□ 1.66
SYNC-202ENST00000409190 EIF4G1Q04637 1599 aaKnown RBP25.3■■□□□ 1.64
SYNC-202ENST00000409190 TOP2AP11388 1531 aaKnown RBP25.29■■□□□ 1.64
SYNC-202ENST00000409190 TNIKQ9UKE5 1360 aa25.28■■□□□ 1.64
SYNC-202ENST00000409190 ZNF316A6NFI3 1004 aaPredicted RBP25.26■■□□□ 1.63
SYNC-202ENST00000409190 SMARCA2P51531 1590 aa25.25■■□□□ 1.63
SYNC-202ENST00000409190 SMARCA4P51532 1647 aa25.22■■□□□ 1.63
SYNC-202ENST00000409190 APLP2Q06481 763 aa25.21■■□□□ 1.63
SYNC-202ENST00000409190 WRNQ14191 1432 aaPredicted RBP eCLIP25.2■■□□□ 1.63
SYNC-202ENST00000409190 MIER1Q8N108 512 aa25.14■■□□□ 1.62
SYNC-202ENST00000409190 GOLGA3Q08378 1498 aa25.09■■□□□ 1.61
SYNC-202ENST00000409190 CLIP1P30622 1438 aa25.02■■□□□ 1.6
SYNC-202ENST00000409190 EEA1Q15075 1411 aa24.99■■□□□ 1.59
SYNC-202ENST00000409190 ITGAEP38570 1179 aa24.92■■□□□ 1.58
SYNC-202ENST00000409190 UNC13AQ9UPW8 1703 aa24.89■■□□□ 1.57
SYNC-202ENST00000409190 CEP164Q9UPV0 1460 aa24.87■■□□□ 1.57
SYNC-202ENST00000409190 RAPGEF2Q9Y4G8 1499 aa24.86■■□□□ 1.57
SYNC-202ENST00000409190 SYNJ1O43426 1573 aa24.85■■□□□ 1.57
SYNC-202ENST00000409190 VPS8Q8N3P4 1428 aa24.78■■□□□ 1.56
SYNC-202ENST00000409190 KANK4Q5T7N3 995 aaPredicted RBP24.75■■□□□ 1.55
SYNC-202ENST00000409190 BAZ1BQ9UIG0 1483 aaKnown RBP24.7■■□□□ 1.54
SYNC-202ENST00000409190 BICRAQ9NZM4 1560 aa24.68■■□□□ 1.54
SYNC-202ENST00000409190 ATAD2BQ9ULI0 1458 aa24.65■■□□□ 1.54
SYNC-202ENST00000409190 KIF21BO75037 1637 aa24.6■■□□□ 1.53
SYNC-202ENST00000409190 ATP1B4Q9UN42 357 aaPredicted RBP24.56■■□□□ 1.52
SYNC-202ENST00000409190 DHX57Q6P158 1386 aaKnown RBP24.52■■□□□ 1.52
SYNC-202ENST00000409190 P3H3Q8IVL6 736 aa24.45■■□□□ 1.5
SYNC-202ENST00000409190 KCNH8Q96L42 1107 aa24.44■■□□□ 1.5
SYNC-202ENST00000409190 ARAP1Q96P48 1450 aa24.39■■□□□ 1.5
SYNC-202ENST00000409190 PEG3Q9GZU2 1588 aa24.38■■□□□ 1.49
SYNC-202ENST00000409190 HIRIP3Q9BW71 556 aaPredicted RBP24.38■■□□□ 1.49
SYNC-202ENST00000409190 FAM50AQ14320 339 aaKnown RBP24.37■■□□□ 1.49
SYNC-202ENST00000409190 BCANQ96GW7 911 aa24.37■■□□□ 1.49
SYNC-202ENST00000409190 SUPT16HQ9Y5B9 1047 aaKnown RBP24.34■■□□□ 1.49
SYNC-202ENST00000409190 TOP2BQ02880 1626 aa24.3■■□□□ 1.48
SYNC-202ENST00000409190 SIN3AQ96ST3 1273 aa24.29■■□□□ 1.48
SYNC-202ENST00000409190 CCNB3Q8WWL7 1395 aa24.28■■□□□ 1.48
SYNC-202ENST00000409190 PRXQ9BXM0 1461 aa24.28■■□□□ 1.48
SYNC-202ENST00000409190 DDX10Q13206 875 aaKnown RBP24.27■■□□□ 1.48
SYNC-202ENST00000409190 KIF27Q86VH2 1401 aa24.27■■□□□ 1.48
SYNC-202ENST00000409190 CLSPNQ9HAW4 1339 aa24.23■■□□□ 1.47
SYNC-202ENST00000409190 CUX1P39880 1505 aa24.2■■□□□ 1.47
SYNC-202ENST00000409190 RAB3GAP2Q9H2M9 1393 aa24.2■■□□□ 1.46
SYNC-202ENST00000409190 ARHGAP35Q9NRY4 1499 aa24.16■■□□□ 1.46
SYNC-202ENST00000409190 RRBP1Q9P2E9 1410 aaKnown RBP24.12■■□□□ 1.45
SYNC-202ENST00000409190 CUX2O14529 1486 aa24.12■■□□□ 1.45
SYNC-202ENST00000409190 ERICH3Q5RHP9 1530 aa24.11■■□□□ 1.45
SYNC-202ENST00000409190 MYT1Q01538 1121 aa24.08■■□□□ 1.45
SYNC-202ENST00000409190 TRIM52Q96A61 297 aa24.08■■□□□ 1.44
SYNC-202ENST00000409190 FKBP8Q14318 412 aa24.05■■□□□ 1.44
SYNC-202ENST00000409190 BIVM-ERCC5R4GMW8 1640 aa24.05■■□□□ 1.44
SYNC-202ENST00000409190 IGF1RP08069 1367 aa24.02■■□□□ 1.44
SYNC-202ENST00000409190 PHLDB1Q86UU1 1377 aa24.01■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 129.7 ms