RNA–Protein interactions for RNA: ENST00000409101.7

SCN3A-203, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN3A, Length 6,599 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-203ENST00000409101 DCAF8L2P0C7V8 631 aa9.15□□□□□ -0.95
SCN3A-203ENST00000409101 NISCHQ9Y2I1 1504 aa8.73□□□□□ -1.01
SCN3A-203ENST00000409101 SUPT5HO00267 1087 aaKnown RBP8.34□□□□□ -1.07
SCN3A-203ENST00000409101 SHROOM4Q9ULL8 1493 aa8.31□□□□□ -1.08
SCN3A-203ENST00000409101 FAM9AQ8IZU1 332 aaPredicted RBP8.21□□□□□ -1.1
SCN3A-203ENST00000409101 EHMT2Q96KQ7 1210 aa8.09□□□□□ -1.11
SCN3A-203ENST00000409101 APLP2Q06481 763 aa8.04□□□□□ -1.12
SCN3A-203ENST00000409101 ATP1B4Q9UN42 357 aaPredicted RBP7.88□□□□□ -1.15
SCN3A-203ENST00000409101 RANGAP1P46060 587 aaPredicted RBP7.87□□□□□ -1.15
SCN3A-203ENST00000409101 ABCC9O60706 1549 aa7.81□□□□□ -1.16
SCN3A-203ENST00000409101 TRIM41Q8WV44 630 aa7.78□□□□□ -1.16
SCN3A-203ENST00000409101 TTBK1Q5TCY1 1321 aaPredicted RBP7.77□□□□□ -1.17
SCN3A-203ENST00000409101 MYT1LQ9UL68 1186 aa7.74□□□□□ -1.17
SCN3A-203ENST00000409101 UBTFP17480 764 aaKnown RBP7.73□□□□□ -1.17
SCN3A-203ENST00000409101 PABPN1Q86U42 306 aaKnown RBP eCLIP7.72□□□□□ -1.17
SCN3A-203ENST00000409101 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.69□□□□□ -1.18
SCN3A-203ENST00000409101 HNRNPUL2Q1KMD3 747 aaKnown RBP7.69□□□□□ -1.18
SCN3A-203ENST00000409101 PELP1Q8IZL8 1130 aaKnown RBP7.54□□□□□ -1.2
SCN3A-203ENST00000409101 FBLN2P98095 1184 aa7.53□□□□□ -1.2
SCN3A-203ENST00000409101 CHIC1Q5VXU3 224 aa7.53□□□□□ -1.2
SCN3A-203ENST00000409101 PCGF6Q9BYE7 350 aa7.51□□□□□ -1.21
SCN3A-203ENST00000409101 CCER1Q8TC90 406 aaPredicted RBP7.46□□□□□ -1.21
SCN3A-203ENST00000409101 ITGAEP38570 1179 aa7.43□□□□□ -1.22
SCN3A-203ENST00000409101 PPARGC1BQ86YN6 1023 aaKnown RBP7.39□□□□□ -1.23
SCN3A-203ENST00000409101 SLC4A1APQ9BWU0 796 aaKnown RBP7.37□□□□□ -1.23
SCN3A-203ENST00000409101 ZEB1P37275 1124 aaPredicted RBP7.36□□□□□ -1.23
SCN3A-203ENST00000409101 POLR3GLQ9BT43 218 aa7.36□□□□□ -1.23
SCN3A-203ENST00000409101 SCRIBQ14160 1630 aa7.36□□□□□ -1.23
SCN3A-203ENST00000409101 NPM1P06748 294 aaKnown RBP eCLIP7.34□□□□□ -1.24
SCN3A-203ENST00000409101 FAM50AQ14320 339 aaKnown RBP7.31□□□□□ -1.24
SCN3A-203ENST00000409101 BCANQ96GW7 911 aa7.31□□□□□ -1.24
SCN3A-203ENST00000409101 ESF1Q9H501 851 aaKnown RBP7.31□□□□□ -1.24
SCN3A-203ENST00000409101 RB1CC1Q8TDY2 1594 aa7.31□□□□□ -1.24
SCN3A-203ENST00000409101 CCDC180Q9P1Z9 1646 aa7.3□□□□□ -1.24
SCN3A-203ENST00000409101 TRIM52Q96A61 297 aa7.29□□□□□ -1.24
SCN3A-203ENST00000409101 ARID3CA6NKF2 412 aa7.27□□□□□ -1.25
SCN3A-203ENST00000409101 PLPPR3Q6T4P5 718 aa7.25□□□□□ -1.25
SCN3A-203ENST00000409101 CDK11AQ9UQ88 783 aaPredicted RBP7.24□□□□□ -1.25
SCN3A-203ENST00000409101 P3H3Q8IVL6 736 aa7.23□□□□□ -1.25
SCN3A-203ENST00000409101 NEFLP07196 543 aa7.23□□□□□ -1.25
SCN3A-203ENST00000409101 CENPBP07199 599 aaPredicted RBP7.22□□□□□ -1.25
SCN3A-203ENST00000409101 ZNF777Q9ULD5 760 aaPredicted RBP7.22□□□□□ -1.25
SCN3A-203ENST00000409101 LOC105371045A0A1W2PR82 267 aa7.21□□□□□ -1.25
SCN3A-203ENST00000409101 CNGB1Q14028 1251 aaPredicted RBP7.21□□□□□ -1.25
SCN3A-203ENST00000409101 CHMP7Q8WUX9 453 aaPredicted RBP7.21□□□□□ -1.26
SCN3A-203ENST00000409101 TRIM26Q12899 539 aaPredicted RBP7.2□□□□□ -1.26
SCN3A-203ENST00000409101 ERCC6Q03468 1493 aa7.2□□□□□ -1.26
SCN3A-203ENST00000409101 ERICH6Q7L0X2 663 aa7.2□□□□□ -1.26
SCN3A-203ENST00000409101 STAG3Q9UJ98 1225 aa7.19□□□□□ -1.26
SCN3A-203ENST00000409101 ZCCHC6Q5VYS8 1495 aaKnown RBP7.18□□□□□ -1.26
SCN3A-203ENST00000409101 NACADO15069 1562 aa7.16□□□□□ -1.26
SCN3A-203ENST00000409101 ZNF326Q5BKZ1 582 aaKnown RBP7.16□□□□□ -1.26
SCN3A-203ENST00000409101 YTHDC1Q96MU7 727 aaKnown RBP7.15□□□□□ -1.26
SCN3A-203ENST00000409101 NEUROD1Q13562 356 aa7.12□□□□□ -1.27
SCN3A-203ENST00000409101 CSRNP3Q8WYN3 585 aa7.12□□□□□ -1.27
SCN3A-203ENST00000409101 SLC24A1O60721 1099 aa7.12□□□□□ -1.27
SCN3A-203ENST00000409101 CHGAP10645 457 aaKnown RBP7.12□□□□□ -1.27
SCN3A-203ENST00000409101 BAZ1BQ9UIG0 1483 aaKnown RBP7.09□□□□□ -1.27
SCN3A-203ENST00000409101 TRHP20396 242 aaPredicted RBP7.08□□□□□ -1.28
SCN3A-203ENST00000409101 NEFMP07197 916 aa7.08□□□□□ -1.28
SCN3A-203ENST00000409101 ARID4BQ4LE39 1312 aaPredicted RBP7.07□□□□□ -1.28
SCN3A-203ENST00000409101 KCNH8Q96L42 1107 aa7.05□□□□□ -1.28
SCN3A-203ENST00000409101 DAXXQ9UER7 740 aaPredicted RBP7.05□□□□□ -1.28
SCN3A-203ENST00000409101 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.04□□□□□ -1.28
SCN3A-203ENST00000409101 SCAF1Q9H7N4 1312 aaKnown RBP7.03□□□□□ -1.28
SCN3A-203ENST00000409101 TSPY4P0CV99 314 aa7.01□□□□□ -1.29
SCN3A-203ENST00000409101 TSPY10P0CW01 314 aa7.01□□□□□ -1.29
SCN3A-203ENST00000409101 ZBTB47Q9UFB7 747 aaPredicted RBP7.01□□□□□ -1.29
SCN3A-203ENST00000409101 PPP1R15AO75807 674 aaPredicted RBP7□□□□□ -1.29
SCN3A-203ENST00000409101 PLEKHD1A6NEE1 506 aa7□□□□□ -1.29
SCN3A-203ENST00000409101 C14orf37Q86TY3 774 aa7□□□□□ -1.29
SCN3A-203ENST00000409101 CLSPNQ9HAW4 1339 aa6.98□□□□□ -1.29
SCN3A-203ENST00000409101 MTUS2Q5JR59 1369 aa6.97□□□□□ -1.29
SCN3A-203ENST00000409101 CHIC2Q9UKJ5 165 aa6.96□□□□□ -1.29
SCN3A-203ENST00000409101 CANXP27824 592 aaKnown RBP6.95□□□□□ -1.3
SCN3A-203ENST00000409101 A0A0G2JS52 829 aa6.95□□□□□ -1.3
SCN3A-203ENST00000409101 HAP1P54257 671 aaPredicted RBP6.94□□□□□ -1.3
SCN3A-203ENST00000409101 PDS5BQ9NTI5 1447 aa6.94□□□□□ -1.3
SCN3A-203ENST00000409101 ZBTB7CA1YPR0 619 aa6.94□□□□□ -1.3
SCN3A-203ENST00000409101 ANP32CO43423 234 aa6.94□□□□□ -1.3
SCN3A-203ENST00000409101 BAZ1AQ9NRL2 1556 aaPredicted RBP6.93□□□□□ -1.3
SCN3A-203ENST00000409101 HRCP23327 699 aa6.92□□□□□ -1.3
SCN3A-203ENST00000409101 RSF1Q96T23 1441 aaPredicted RBP6.92□□□□□ -1.3
SCN3A-203ENST00000409101 KIF27Q86VH2 1401 aa6.92□□□□□ -1.3
SCN3A-203ENST00000409101 CECR2Q9BXF3 1484 aa6.92□□□□□ -1.3
SCN3A-203ENST00000409101 SENP3Q9H4L4 574 aaPredicted RBP6.91□□□□□ -1.3
SCN3A-203ENST00000409101 PLEKHG5O94827 1062 aa6.91□□□□□ -1.3
SCN3A-203ENST00000409101 WRNQ14191 1432 aaPredicted RBP eCLIP6.91□□□□□ -1.3
SCN3A-203ENST00000409101 EIF4G1Q04637 1599 aaKnown RBP6.91□□□□□ -1.3
SCN3A-203ENST00000409101 BCL11AQ9H165 835 aa6.9□□□□□ -1.31
SCN3A-203ENST00000409101 TONSLQ96HA7 1378 aa6.89□□□□□ -1.31
SCN3A-203ENST00000409101 SMARCA2P51531 1590 aa6.89□□□□□ -1.31
SCN3A-203ENST00000409101 ZNF316A6NFI3 1004 aaPredicted RBP6.88□□□□□ -1.31
SCN3A-203ENST00000409101 CFDP1Q9UEE9 299 aaPredicted RBP6.88□□□□□ -1.31
SCN3A-203ENST00000409101 KDM2AQ9Y2K7 1162 aa6.87□□□□□ -1.31
SCN3A-203ENST00000409101 NPM2Q86SE8 214 aaKnown RBP6.87□□□□□ -1.31
SCN3A-203ENST00000409101 MLECQ14165 292 aa6.86□□□□□ -1.31
SCN3A-203ENST00000409101 DCAF1Q9Y4B6 1507 aa6.86□□□□□ -1.31
SCN3A-203ENST00000409101 CLIP1P30622 1438 aa6.86□□□□□ -1.31
SCN3A-203ENST00000409101 AEBP2Q6ZN18 517 aaPredicted RBP6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms