RNA–Protein interactions for RNA: ENST00000406451.8

HDAC9-204, Transcript of histone deacetylase 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HDAC9, Length 9,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-204ENST00000406451 DCAF8L2P0C7V8 631 aa8.97□□□□□ -0.97
HDAC9-204ENST00000406451 NISCHQ9Y2I1 1504 aa8.8□□□□□ -1
HDAC9-204ENST00000406451 SUPT5HO00267 1087 aaKnown RBP8.31□□□□□ -1.08
HDAC9-204ENST00000406451 SHROOM4Q9ULL8 1493 aa8.29□□□□□ -1.08
HDAC9-204ENST00000406451 EHMT2Q96KQ7 1210 aa8.01□□□□□ -1.13
HDAC9-204ENST00000406451 FAM9AQ8IZU1 332 aaPredicted RBP7.98□□□□□ -1.13
HDAC9-204ENST00000406451 APLP2Q06481 763 aa7.93□□□□□ -1.14
HDAC9-204ENST00000406451 RANGAP1P46060 587 aaPredicted RBP7.76□□□□□ -1.17
HDAC9-204ENST00000406451 TRIM41Q8WV44 630 aa7.75□□□□□ -1.17
HDAC9-204ENST00000406451 ATP1B4Q9UN42 357 aaPredicted RBP7.72□□□□□ -1.17
HDAC9-204ENST00000406451 ABCC9O60706 1549 aa7.72□□□□□ -1.17
HDAC9-204ENST00000406451 TTBK1Q5TCY1 1321 aaPredicted RBP7.71□□□□□ -1.17
HDAC9-204ENST00000406451 UBTFP17480 764 aaKnown RBP7.68□□□□□ -1.18
HDAC9-204ENST00000406451 PABPN1Q86U42 306 aaKnown RBP eCLIP7.58□□□□□ -1.2
HDAC9-204ENST00000406451 PCGF6Q9BYE7 350 aa7.54□□□□□ -1.2
HDAC9-204ENST00000406451 PELP1Q8IZL8 1130 aaKnown RBP7.53□□□□□ -1.2
HDAC9-204ENST00000406451 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.52□□□□□ -1.21
HDAC9-204ENST00000406451 HNRNPUL2Q1KMD3 747 aaKnown RBP7.52□□□□□ -1.21
HDAC9-204ENST00000406451 MYT1LQ9UL68 1186 aa7.51□□□□□ -1.21
HDAC9-204ENST00000406451 CCER1Q8TC90 406 aaPredicted RBP7.47□□□□□ -1.21
HDAC9-204ENST00000406451 CCDC180Q9P1Z9 1646 aa7.43□□□□□ -1.22
HDAC9-204ENST00000406451 ZEB1P37275 1124 aaPredicted RBP7.41□□□□□ -1.22
HDAC9-204ENST00000406451 PPARGC1BQ86YN6 1023 aaKnown RBP7.39□□□□□ -1.23
HDAC9-204ENST00000406451 SCRIBQ14160 1630 aa7.38□□□□□ -1.23
HDAC9-204ENST00000406451 ITGAEP38570 1179 aa7.37□□□□□ -1.23
HDAC9-204ENST00000406451 FBLN2P98095 1184 aa7.35□□□□□ -1.23
HDAC9-204ENST00000406451 CHIC1Q5VXU3 224 aa7.33□□□□□ -1.24
HDAC9-204ENST00000406451 RB1CC1Q8TDY2 1594 aa7.29□□□□□ -1.24
HDAC9-204ENST00000406451 CENPBP07199 599 aaPredicted RBP7.28□□□□□ -1.24
HDAC9-204ENST00000406451 LOC105371045A0A1W2PR82 267 aa7.27□□□□□ -1.25
HDAC9-204ENST00000406451 POLR3GLQ9BT43 218 aa7.27□□□□□ -1.25
HDAC9-204ENST00000406451 TRIM26Q12899 539 aaPredicted RBP7.26□□□□□ -1.25
HDAC9-204ENST00000406451 ZCCHC6Q5VYS8 1495 aaKnown RBP7.26□□□□□ -1.25
HDAC9-204ENST00000406451 FAM50AQ14320 339 aaKnown RBP7.24□□□□□ -1.25
HDAC9-204ENST00000406451 NEFLP07196 543 aa7.23□□□□□ -1.25
HDAC9-204ENST00000406451 SLC4A1APQ9BWU0 796 aaKnown RBP7.21□□□□□ -1.25
HDAC9-204ENST00000406451 NACADO15069 1562 aa7.19□□□□□ -1.26
HDAC9-204ENST00000406451 TRIM52Q96A61 297 aa7.18□□□□□ -1.26
HDAC9-204ENST00000406451 YTHDC1Q96MU7 727 aaKnown RBP7.17□□□□□ -1.26
HDAC9-204ENST00000406451 ERICH6Q7L0X2 663 aa7.16□□□□□ -1.26
HDAC9-204ENST00000406451 ARID3CA6NKF2 412 aa7.15□□□□□ -1.26
HDAC9-204ENST00000406451 P3H3Q8IVL6 736 aa7.14□□□□□ -1.27
HDAC9-204ENST00000406451 CNGB1Q14028 1251 aaPredicted RBP7.14□□□□□ -1.27
HDAC9-204ENST00000406451 NPM1P06748 294 aaKnown RBP eCLIP7.13□□□□□ -1.27
HDAC9-204ENST00000406451 CDK11AQ9UQ88 783 aaPredicted RBP7.13□□□□□ -1.27
HDAC9-204ENST00000406451 ESF1Q9H501 851 aaKnown RBP7.12□□□□□ -1.27
HDAC9-204ENST00000406451 CSRNP3Q8WYN3 585 aa7.11□□□□□ -1.27
HDAC9-204ENST00000406451 BCANQ96GW7 911 aa7.11□□□□□ -1.27
HDAC9-204ENST00000406451 DCAF1Q9Y4B6 1507 aa7.09□□□□□ -1.27
HDAC9-204ENST00000406451 ZNF777Q9ULD5 760 aaPredicted RBP7.09□□□□□ -1.27
HDAC9-204ENST00000406451 ZNF326Q5BKZ1 582 aaKnown RBP7.09□□□□□ -1.28
HDAC9-204ENST00000406451 NEUROD1Q13562 356 aa7.07□□□□□ -1.28
HDAC9-204ENST00000406451 BAZ1BQ9UIG0 1483 aaKnown RBP7.07□□□□□ -1.28
HDAC9-204ENST00000406451 CHMP7Q8WUX9 453 aaPredicted RBP7.07□□□□□ -1.28
HDAC9-204ENST00000406451 ERCC6Q03468 1493 aa7.06□□□□□ -1.28
HDAC9-204ENST00000406451 HRCP23327 699 aa7.04□□□□□ -1.28
HDAC9-204ENST00000406451 PLPPR3Q6T4P5 718 aa7.02□□□□□ -1.29
HDAC9-204ENST00000406451 STAG3Q9UJ98 1225 aa7.02□□□□□ -1.29
HDAC9-204ENST00000406451 DAXXQ9UER7 740 aaPredicted RBP7.01□□□□□ -1.29
HDAC9-204ENST00000406451 MYO15BQ96JP2 1530 aa7□□□□□ -1.29
HDAC9-204ENST00000406451 BAZ1AQ9NRL2 1556 aaPredicted RBP6.98□□□□□ -1.29
HDAC9-204ENST00000406451 CHGAP10645 457 aaKnown RBP6.97□□□□□ -1.29
HDAC9-204ENST00000406451 NEFMP07197 916 aa6.96□□□□□ -1.3
HDAC9-204ENST00000406451 SLC24A1O60721 1099 aa6.96□□□□□ -1.3
HDAC9-204ENST00000406451 RSF1Q96T23 1441 aaPredicted RBP6.94□□□□□ -1.3
HDAC9-204ENST00000406451 MTUS2Q5JR59 1369 aa6.94□□□□□ -1.3
HDAC9-204ENST00000406451 CLSPNQ9HAW4 1339 aa6.93□□□□□ -1.3
HDAC9-204ENST00000406451 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.93□□□□□ -1.3
HDAC9-204ENST00000406451 ANP32CO43423 234 aa6.93□□□□□ -1.3
HDAC9-204ENST00000406451 TSPY4P0CV99 314 aa6.92□□□□□ -1.3
HDAC9-204ENST00000406451 TSPY10P0CW01 314 aa6.92□□□□□ -1.3
HDAC9-204ENST00000406451 DIEXFQ68CQ4 756 aaKnown RBP6.92□□□□□ -1.3
HDAC9-204ENST00000406451 WRNQ14191 1432 aaPredicted RBP eCLIP6.92□□□□□ -1.3
HDAC9-204ENST00000406451 KCNH8Q96L42 1107 aa6.91□□□□□ -1.3
HDAC9-204ENST00000406451 KIF27Q86VH2 1401 aa6.91□□□□□ -1.3
HDAC9-204ENST00000406451 ZBTB47Q9UFB7 747 aaPredicted RBP6.91□□□□□ -1.3
HDAC9-204ENST00000406451 SMARCA2P51531 1590 aa6.9□□□□□ -1.3
HDAC9-204ENST00000406451 CLIP1P30622 1438 aa6.9□□□□□ -1.3
HDAC9-204ENST00000406451 EEA1Q15075 1411 aa6.9□□□□□ -1.31
HDAC9-204ENST00000406451 PLEKHD1A6NEE1 506 aa6.89□□□□□ -1.31
HDAC9-204ENST00000406451 CHIC2Q9UKJ5 165 aa6.89□□□□□ -1.31
HDAC9-204ENST00000406451 TONSLQ96HA7 1378 aa6.89□□□□□ -1.31
HDAC9-204ENST00000406451 ARID4BQ4LE39 1312 aaPredicted RBP6.88□□□□□ -1.31
HDAC9-204ENST00000406451 CANXP27824 592 aaKnown RBP6.87□□□□□ -1.31
HDAC9-204ENST00000406451 GOLGA3Q08378 1498 aa6.87□□□□□ -1.31
HDAC9-204ENST00000406451 CECR2Q9BXF3 1484 aa6.86□□□□□ -1.31
HDAC9-204ENST00000406451 PDS5BQ9NTI5 1447 aa6.85□□□□□ -1.31
HDAC9-204ENST00000406451 PPP1R15AO75807 674 aaPredicted RBP6.85□□□□□ -1.31
HDAC9-204ENST00000406451 EIF4G1Q04637 1599 aaKnown RBP6.84□□□□□ -1.31
HDAC9-204ENST00000406451 ZNF316A6NFI3 1004 aaPredicted RBP6.84□□□□□ -1.31
HDAC9-204ENST00000406451 TRHP20396 242 aaPredicted RBP6.83□□□□□ -1.32
HDAC9-204ENST00000406451 SCAF1Q9H7N4 1312 aaKnown RBP6.82□□□□□ -1.32
HDAC9-204ENST00000406451 CEP164Q9UPV0 1460 aa6.82□□□□□ -1.32
HDAC9-204ENST00000406451 C14orf37Q86TY3 774 aa6.82□□□□□ -1.32
HDAC9-204ENST00000406451 CFDP1Q9UEE9 299 aaPredicted RBP6.81□□□□□ -1.32
HDAC9-204ENST00000406451 CUX2O14529 1486 aa6.81□□□□□ -1.32
HDAC9-204ENST00000406451 BCL11AQ9H165 835 aa6.81□□□□□ -1.32
HDAC9-204ENST00000406451 KDM2AQ9Y2K7 1162 aa6.8□□□□□ -1.32
HDAC9-204ENST00000406451 RRP7BPQ9NSQ0 103 aa6.8□□□□□ -1.32
HDAC9-204ENST00000406451 CEP162Q5TB80 1403 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms