RNA–Protein interactions for RNA: ENST00000400772.6

ATG4B-203, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 4

Gene ATG4B, Length 625 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-203ENST00000400772 NISCHQ9Y2I1 1504 aa39.17■■■■□ 3.86
ATG4B-203ENST00000400772 CCDC180Q9P1Z9 1646 aa34.88■■■■□ 3.17
ATG4B-203ENST00000400772 ABCC9O60706 1549 aa34.56■■■■□ 3.12
ATG4B-203ENST00000400772 RB1CC1Q8TDY2 1594 aa33.03■■■□□ 2.88
ATG4B-203ENST00000400772 NACADO15069 1562 aa32.93■■■□□ 2.86
ATG4B-203ENST00000400772 DCAF8L2P0C7V8 631 aa32.9■■■□□ 2.86
ATG4B-203ENST00000400772 MYO15BQ96JP2 1530 aa32.63■■■□□ 2.81
ATG4B-203ENST00000400772 ZCCHC6Q5VYS8 1495 aaKnown RBP32.54■■■□□ 2.8
ATG4B-203ENST00000400772 DCAF1Q9Y4B6 1507 aa32.36■■■□□ 2.77
ATG4B-203ENST00000400772 PABPN1Q86U42 306 aaKnown RBP eCLIP32.3■■■□□ 2.76
ATG4B-203ENST00000400772 UNC13AQ9UPW8 1703 aa32.29■■■□□ 2.76
ATG4B-203ENST00000400772 DNAJC5BQ9UF47 199 aa32.16■■■□□ 2.74
ATG4B-203ENST00000400772 BICRAQ9NZM4 1560 aa32.11■■■□□ 2.73
ATG4B-203ENST00000400772 SCRIBQ14160 1630 aa31.85■■■□□ 2.69
ATG4B-203ENST00000400772 SHROOM4Q9ULL8 1493 aa31.65■■■□□ 2.66
ATG4B-203ENST00000400772 EIF4G1Q04637 1599 aaKnown RBP31.26■■■□□ 2.6
ATG4B-203ENST00000400772 CC2D2AQ9P2K1 1620 aa31.23■■■□□ 2.59
ATG4B-203ENST00000400772 CECR2Q9BXF3 1484 aa31.08■■■□□ 2.57
ATG4B-203ENST00000400772 NCAPD3P42695 1498 aa30.44■■■□□ 2.46
ATG4B-203ENST00000400772 SMARCA4P51532 1647 aa30.44■■■□□ 2.46
ATG4B-203ENST00000400772 ATAD2BQ9ULI0 1458 aa30.41■■■□□ 2.46
ATG4B-203ENST00000400772 BAZ1AQ9NRL2 1556 aaPredicted RBP30.34■■■□□ 2.45
ATG4B-203ENST00000400772 SMARCA2P51531 1590 aa30.28■■■□□ 2.44
ATG4B-203ENST00000400772 MROH2BQ7Z745 1585 aa30.2■■■□□ 2.43
ATG4B-203ENST00000400772 HMGXB3Q12766 1538 aa30.2■■■□□ 2.42
ATG4B-203ENST00000400772 PEG3Q9GZU2 1588 aa30.15■■■□□ 2.42
ATG4B-203ENST00000400772 BAZ1BQ9UIG0 1483 aaKnown RBP30.09■■■□□ 2.41
ATG4B-203ENST00000400772 WIZO95785 1651 aa29.84■■■□□ 2.37
ATG4B-203ENST00000400772 NESP48681 1621 aa29.83■■■□□ 2.37
ATG4B-203ENST00000400772 ERCC6Q03468 1493 aa29.76■■■□□ 2.35
ATG4B-203ENST00000400772 RSF1Q96T23 1441 aaPredicted RBP29.74■■■□□ 2.35
ATG4B-203ENST00000400772 LAMC3Q9Y6N6 1575 aa29.63■■■□□ 2.33
ATG4B-203ENST00000400772 CUX2O14529 1486 aa29.59■■■□□ 2.33
ATG4B-203ENST00000400772 CADPSQ9ULU8 1353 aa29.54■■■□□ 2.32
ATG4B-203ENST00000400772 TOP2AP11388 1531 aaKnown RBP29.47■■■□□ 2.31
ATG4B-203ENST00000400772 PDS5BQ9NTI5 1447 aa29.46■■■□□ 2.31
ATG4B-203ENST00000400772 THOC2Q8NI27 1593 aaKnown RBP29.39■■■□□ 2.3
ATG4B-203ENST00000400772 KIF21AQ7Z4S6 1674 aa29.39■■■□□ 2.3
ATG4B-203ENST00000400772 CFTRP13569 1480 aa29.28■■■□□ 2.28
ATG4B-203ENST00000400772 CCDC88BA6NC98 1476 aa29.18■■■□□ 2.26
ATG4B-203ENST00000400772 MRC2Q9UBG0 1479 aa29.18■■■□□ 2.26
ATG4B-203ENST00000400772 FANCD2Q9BXW9 1451 aa29.17■■■□□ 2.26
ATG4B-203ENST00000400772 DNAJC5Q9H3Z4 198 aa29.17■■■□□ 2.26
ATG4B-203ENST00000400772 CEP164Q9UPV0 1460 aa29.13■■■□□ 2.25
ATG4B-203ENST00000400772 WDR62O43379 1518 aa29.1■■■□□ 2.25
ATG4B-203ENST00000400772 PRDM2Q13029 1718 aa28.92■■■□□ 2.22
ATG4B-203ENST00000400772 URB2Q14146 1524 aaKnown RBP28.92■■■□□ 2.22
ATG4B-203ENST00000400772 SUPT5HO00267 1087 aaKnown RBP28.73■■■□□ 2.19
ATG4B-203ENST00000400772 TOPBP1Q92547 1522 aa28.68■■■□□ 2.18
ATG4B-203ENST00000400772 ABCC8Q09428 1581 aa28.61■■■□□ 2.17
ATG4B-203ENST00000400772 DNMBPQ6XZF7 1577 aa28.58■■■□□ 2.17
ATG4B-203ENST00000400772 IFT140Q96RY7 1462 aa28.56■■■□□ 2.16
ATG4B-203ENST00000400772 ZNF608Q9ULD9 1512 aaPredicted RBP28.52■■■□□ 2.16
ATG4B-203ENST00000400772 POLA1P09884 1462 aaPredicted RBP28.41■■■□□ 2.14
ATG4B-203ENST00000400772 TARBP1Q13395 1621 aaKnown RBP28.37■■■□□ 2.13
ATG4B-203ENST00000400772 OSCARQ8IYS5 282 aa28.35■■■□□ 2.13
ATG4B-203ENST00000400772 CUX1P39880 1505 aa28.33■■■□□ 2.13
ATG4B-203ENST00000400772 RAD54L2Q9Y4B4 1467 aa28.33■■■□□ 2.13
ATG4B-203ENST00000400772 AQRO60306 1485 aaKnown RBP eCLIP28.32■■■□□ 2.122e-11■■■□□ 18.5
ATG4B-203ENST00000400772 EIF4G3O43432 1585 aaKnown RBP28.31■■■□□ 2.12
ATG4B-203ENST00000400772 SOGA1O94964 1423 aa28.3■■■□□ 2.12
ATG4B-203ENST00000400772 FGD5Q6ZNL6 1462 aa28.28■■■□□ 2.12
ATG4B-203ENST00000400772 TDRD9Q8NDG6 1382 aaKnown RBP28.21■■■□□ 2.11
ATG4B-203ENST00000400772 WDR97A6NE52 1622 aa28.07■■■□□ 2.08
ATG4B-203ENST00000400772 TRIM41Q8WV44 630 aa28.03■■■□□ 2.08
ATG4B-203ENST00000400772 WRNQ14191 1432 aaPredicted RBP eCLIP28.01■■■□□ 2.08
ATG4B-203ENST00000400772 FBLN2P98095 1184 aa28.01■■■□□ 2.07
ATG4B-203ENST00000400772 CHD1O14646 1710 aa28.01■■■□□ 2.07
ATG4B-203ENST00000400772 SNAPC4Q5SXM2 1469 aa28■■■□□ 2.07
ATG4B-203ENST00000400772 ABCA10Q8WWZ4 1543 aa27.99■■■□□ 2.07
ATG4B-203ENST00000400772 GRIN2BQ13224 1484 aa27.97■■■□□ 2.07
ATG4B-203ENST00000400772 TOP2BQ02880 1626 aa27.97■■■□□ 2.07
ATG4B-203ENST00000400772 SYNJ1O43426 1573 aa27.97■■■□□ 2.07
ATG4B-203ENST00000400772 BIVM-ERCC5R4GMW8 1640 aa27.95■■■□□ 2.06
ATG4B-203ENST00000400772 GAPVD1Q14C86 1478 aa27.94■■■□□ 2.06
ATG4B-203ENST00000400772 MAGI1Q96QZ7 1491 aaPredicted RBP27.92■■■□□ 2.06
ATG4B-203ENST00000400772 RIMBP3CA6NJZ7 1639 aa27.89■■■□□ 2.06
ATG4B-203ENST00000400772 RIMBP3BA6NNM3 1639 aa27.89■■■□□ 2.06
ATG4B-203ENST00000400772 RIMBP3Q9UFD9 1639 aa27.89■■■□□ 2.06
ATG4B-203ENST00000400772 ABCA5Q8WWZ7 1642 aa27.89■■■□□ 2.05
ATG4B-203ENST00000400772 CHMP7Q8WUX9 453 aaPredicted RBP27.88■■■□□ 2.05
ATG4B-203ENST00000400772 ARHGEF11O15085 1522 aa27.86■■■□□ 2.05
ATG4B-203ENST00000400772 PBRM1Q86U86 1689 aa27.84■■■□□ 2.05
ATG4B-203ENST00000400772 SYNJ2O15056 1496 aa27.83■■■□□ 2.05
ATG4B-203ENST00000400772 CLASP1Q7Z460 1538 aa27.74■■■□□ 2.03
ATG4B-203ENST00000400772 CYB5RLQ6IPT4 315 aa27.67■■■□□ 2.02
ATG4B-203ENST00000400772 ADAMTS12P58397 1594 aa27.64■■■□□ 2.01
ATG4B-203ENST00000400772 ARAP1Q96P48 1450 aa27.64■■■□□ 2.01
ATG4B-203ENST00000400772 ERICH3Q5RHP9 1530 aa27.62■■■□□ 2.01
ATG4B-203ENST00000400772 GRIN2AQ12879 1464 aa27.62■■■□□ 2.01
ATG4B-203ENST00000400772 FHAD1B1AJZ9 1412 aa27.6■■■□□ 2.01
ATG4B-203ENST00000400772 NUP160Q12769 1436 aa27.54■■■□□ 2
ATG4B-203ENST00000400772 CEP170Q5SW79 1584 aa27.51■■□□□ 1.99
ATG4B-203ENST00000400772 IGF1RP08069 1367 aa27.46■■□□□ 1.99
ATG4B-203ENST00000400772 KIF27Q86VH2 1401 aa27.44■■□□□ 1.98
ATG4B-203ENST00000400772 ERCC6L2Q5T890 1561 aa27.37■■□□□ 1.97
ATG4B-203ENST00000400772 SHROOM2Q13796 1616 aa27.34■■□□□ 1.97
ATG4B-203ENST00000400772 JPH4Q96JJ6 628 aa27.29■■□□□ 1.96
ATG4B-203ENST00000400772 CUL7Q14999 1698 aa27.27■■□□□ 1.96
ATG4B-203ENST00000400772 CARMIL1Q5VZK9 1371 aa27.24■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms