RNA–Protein interactions for RNA: ENST00000399916.5

RUNX3-203, Transcript of runt related transcription factor 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene RUNX3, Length 4,340 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RUNX3-203ENST00000399916 NISCHQ9Y2I1 1504 aa24.79■■□□□ 1.56
RUNX3-203ENST00000399916 PELP1Q8IZL8 1130 aaKnown RBP23.01■■□□□ 1.27
RUNX3-203ENST00000399916 PCGF6Q9BYE7 350 aa22.55■■□□□ 1.2
RUNX3-203ENST00000399916 SHROOM4Q9ULL8 1493 aa22.48■■□□□ 1.19
RUNX3-203ENST00000399916 SUPT5HO00267 1087 aaKnown RBP22.46■■□□□ 1.19
RUNX3-203ENST00000399916 MYT1Q01538 1121 aa22.45■■□□□ 1.18
RUNX3-203ENST00000399916 PPARGC1BQ86YN6 1023 aaKnown RBP22.33■■□□□ 1.16
RUNX3-203ENST00000399916 DCAF8L2P0C7V8 631 aa22.32■■□□□ 1.16
RUNX3-203ENST00000399916 HRCP23327 699 aa22.25■■□□□ 1.15
RUNX3-203ENST00000399916 CENPBP07199 599 aaPredicted RBP21.64■■□□□ 1.05
RUNX3-203ENST00000399916 EHMT2Q96KQ7 1210 aa21.58■■□□□ 1.05
RUNX3-203ENST00000399916 YTHDC1Q96MU7 727 aaKnown RBP21.53■■□□□ 1.04
RUNX3-203ENST00000399916 CHIC1Q5VXU3 224 aa21.41■■□□□ 1.02
RUNX3-203ENST00000399916 SCAF1Q9H7N4 1312 aaKnown RBP21.41■■□□□ 1.02
RUNX3-203ENST00000399916 GTF3C3Q9Y5Q9 886 aa21.35■■□□□ 1.01
RUNX3-203ENST00000399916 ABCC9O60706 1549 aa21.33■■□□□ 1.01
RUNX3-203ENST00000399916 CCDC180Q9P1Z9 1646 aa21.25■□□□□ 0.99
RUNX3-203ENST00000399916 ZEB1P37275 1124 aaPredicted RBP21.25■□□□□ 0.99
RUNX3-203ENST00000399916 LOC105371045A0A1W2PR82 267 aa21.2■□□□□ 0.99
RUNX3-203ENST00000399916 MYO15BQ96JP2 1530 aa21.1■□□□□ 0.97
RUNX3-203ENST00000399916 TTBK1Q5TCY1 1321 aaPredicted RBP21.06■□□□□ 0.96
RUNX3-203ENST00000399916 CCER1Q8TC90 406 aaPredicted RBP21.04■□□□□ 0.96
RUNX3-203ENST00000399916 ERICH6Q7L0X2 663 aa21.02■□□□□ 0.96
RUNX3-203ENST00000399916 ACIN1Q9UKV3 1341 aaKnown RBP21■□□□□ 0.95
RUNX3-203ENST00000399916 TRIM26Q12899 539 aaPredicted RBP20.97■□□□□ 0.95
RUNX3-203ENST00000399916 FAM9AQ8IZU1 332 aaPredicted RBP20.94■□□□□ 0.94
RUNX3-203ENST00000399916 NEUROD1Q13562 356 aa20.9■□□□□ 0.94
RUNX3-203ENST00000399916 DIEXFQ68CQ4 756 aaKnown RBP20.76■□□□□ 0.91
RUNX3-203ENST00000399916 BCL11AQ9H165 835 aa20.75■□□□□ 0.91
RUNX3-203ENST00000399916 TRIM41Q8WV44 630 aa20.64■□□□□ 0.89
RUNX3-203ENST00000399916 ZCCHC6Q5VYS8 1495 aaKnown RBP20.62■□□□□ 0.89
RUNX3-203ENST00000399916 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.59■□□□□ 0.89
RUNX3-203ENST00000399916 DCAF1Q9Y4B6 1507 aa20.52■□□□□ 0.88
RUNX3-203ENST00000399916 BCANQ96GW7 911 aa20.5■□□□□ 0.87
RUNX3-203ENST00000399916 PABPN1Q86U42 306 aaKnown RBP eCLIP20.44■□□□□ 0.86
RUNX3-203ENST00000399916 NEFLP07196 543 aa20.36■□□□□ 0.85
RUNX3-203ENST00000399916 ANP32EQ9BTT0 268 aa20.26■□□□□ 0.83
RUNX3-203ENST00000399916 RB1CC1Q8TDY2 1594 aa20.25■□□□□ 0.83
RUNX3-203ENST00000399916 NACADO15069 1562 aa20.22■□□□□ 0.83
RUNX3-203ENST00000399916 SCRIBQ14160 1630 aa20.19■□□□□ 0.82
RUNX3-203ENST00000399916 EIF5BO60841 1220 aaKnown RBP20.1■□□□□ 0.81
RUNX3-203ENST00000399916 PRKCSHP14314 528 aaPredicted RBP20.09■□□□□ 0.81
RUNX3-203ENST00000399916 CSRNP3Q8WYN3 585 aa20.09■□□□□ 0.81
RUNX3-203ENST00000399916 RTL5Q5HYW3 569 aaPredicted RBP19.93■□□□□ 0.78
RUNX3-203ENST00000399916 ZNF316A6NFI3 1004 aaPredicted RBP19.92■□□□□ 0.78
RUNX3-203ENST00000399916 HNRNPUL2Q1KMD3 747 aaKnown RBP19.85■□□□□ 0.77
RUNX3-203ENST00000399916 MIER1Q8N108 512 aa19.85■□□□□ 0.77
RUNX3-203ENST00000399916 UBTFP17480 764 aaKnown RBP19.83■□□□□ 0.76
RUNX3-203ENST00000399916 RANGAP1P46060 587 aaPredicted RBP19.83■□□□□ 0.76
RUNX3-203ENST00000399916 APLP2Q06481 763 aa19.82■□□□□ 0.76
RUNX3-203ENST00000399916 NBR1Q14596 966 aa19.81■□□□□ 0.76
RUNX3-203ENST00000399916 RTN4Q9NQC3 1192 aaKnown RBP19.8■□□□□ 0.76
RUNX3-203ENST00000399916 FKBP8Q14318 412 aa19.79■□□□□ 0.76
RUNX3-203ENST00000399916 ITGAEP38570 1179 aa19.77■□□□□ 0.76
RUNX3-203ENST00000399916 RSF1Q96T23 1441 aaPredicted RBP19.76■□□□□ 0.75
RUNX3-203ENST00000399916 CCDC136Q96JN2 1154 aa19.69■□□□□ 0.74
RUNX3-203ENST00000399916 CDK11AQ9UQ88 783 aaPredicted RBP19.65■□□□□ 0.74
RUNX3-203ENST00000399916 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.62■□□□□ 0.73
RUNX3-203ENST00000399916 SUPT16HQ9Y5B9 1047 aaKnown RBP19.62■□□□□ 0.73
RUNX3-203ENST00000399916 TSHZ2Q9NRE2 1034 aa19.6■□□□□ 0.73
RUNX3-203ENST00000399916 ANO8Q9HCE9 1232 aaPredicted RBP19.51■□□□□ 0.71
RUNX3-203ENST00000399916 DEKP35659 375 aaKnown RBP19.48■□□□□ 0.71
RUNX3-203ENST00000399916 CNGB1Q14028 1251 aaPredicted RBP19.47■□□□□ 0.71
RUNX3-203ENST00000399916 CECR2Q9BXF3 1484 aa19.45■□□□□ 0.7
RUNX3-203ENST00000399916 DAXXQ9UER7 740 aaPredicted RBP19.42■□□□□ 0.7
RUNX3-203ENST00000399916 RBM19Q9Y4C8 960 aaKnown RBP19.41■□□□□ 0.7
RUNX3-203ENST00000399916 IRX6P78412 446 aaPredicted RBP19.41■□□□□ 0.7
RUNX3-203ENST00000399916 TRIM52Q96A61 297 aa19.36■□□□□ 0.69
RUNX3-203ENST00000399916 NPM2Q86SE8 214 aaKnown RBP19.35■□□□□ 0.69
RUNX3-203ENST00000399916 CLSPNQ9HAW4 1339 aa19.35■□□□□ 0.69
RUNX3-203ENST00000399916 MYT1LQ9UL68 1186 aa19.32■□□□□ 0.68
RUNX3-203ENST00000399916 CEP162Q5TB80 1403 aa19.27■□□□□ 0.68
RUNX3-203ENST00000399916 BAZ1AQ9NRL2 1556 aaPredicted RBP19.25■□□□□ 0.67
RUNX3-203ENST00000399916 GLIPR1L2Q4G1C9 344 aa19.25■□□□□ 0.67
RUNX3-203ENST00000399916 ANP32AP39687 249 aaKnown RBP19.23■□□□□ 0.67
RUNX3-203ENST00000399916 MROH2BQ7Z745 1585 aa19.2■□□□□ 0.66
RUNX3-203ENST00000399916 SALL2Q9Y467 1007 aaPredicted RBP19.19■□□□□ 0.66
RUNX3-203ENST00000399916 BICRAQ9NZM4 1560 aa19.15■□□□□ 0.66
RUNX3-203ENST00000399916 SOGA1O94964 1423 aa19.13■□□□□ 0.65
RUNX3-203ENST00000399916 ZBTB47Q9UFB7 747 aaPredicted RBP19.13■□□□□ 0.65
RUNX3-203ENST00000399916 BAZ1BQ9UIG0 1483 aaKnown RBP19.11■□□□□ 0.65
RUNX3-203ENST00000399916 ARXQ96QS3 562 aa19.09■□□□□ 0.65
RUNX3-203ENST00000399916 CCDC88BA6NC98 1476 aa19.09■□□□□ 0.65
RUNX3-203ENST00000399916 DDX10Q13206 875 aaKnown RBP19.09■□□□□ 0.65
RUNX3-203ENST00000399916 ABCC8Q09428 1581 aa19.08■□□□□ 0.65
RUNX3-203ENST00000399916 UNC13AQ9UPW8 1703 aa19.07■□□□□ 0.64
RUNX3-203ENST00000399916 ANP32CO43423 234 aa19.06■□□□□ 0.64
RUNX3-203ENST00000399916 WIZO95785 1651 aa19.06■□□□□ 0.64
RUNX3-203ENST00000399916 TNIKQ9UKE5 1360 aa19.05■□□□□ 0.64
RUNX3-203ENST00000399916 POLR3GLQ9BT43 218 aa19.05■□□□□ 0.64
RUNX3-203ENST00000399916 HNRNPUQ00839 825 aaKnown RBP eCLIP19.01■□□□□ 0.63
RUNX3-203ENST00000399916 SMARCA4P51532 1647 aa18.99■□□□□ 0.63
RUNX3-203ENST00000399916 LAS1LQ9Y4W2 734 aaKnown RBP18.99■□□□□ 0.63
RUNX3-203ENST00000399916 ATP1B4Q9UN42 357 aaPredicted RBP18.97■□□□□ 0.63
RUNX3-203ENST00000399916 EIF4G1Q04637 1599 aaKnown RBP18.97■□□□□ 0.63
RUNX3-203ENST00000399916 NOP58Q9Y2X3 529 aaKnown RBP18.96■□□□□ 0.63
RUNX3-203ENST00000399916 ATAD2BQ9ULI0 1458 aa18.95■□□□□ 0.62
RUNX3-203ENST00000399916 NEFMP07197 916 aa18.95■□□□□ 0.62
RUNX3-203ENST00000399916 SMARCA2P51531 1590 aa18.95■□□□□ 0.62
RUNX3-203ENST00000399916 WRNQ14191 1432 aaPredicted RBP eCLIP18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms