RNA–Protein interactions for RNA: ENST00000399026.1

BRCC3-205, Transcript of BRCA1/BRCA2-containing complex subunit 3, humanhuman

TSL 5

Gene BRCC3, Length 456 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3-205ENST00000399026 AEBP2Q6ZN18 517 aaPredicted RBP24.77■■□□□ 1.56
BRCC3-205ENST00000399026 CHIC1Q5VXU3 224 aa23.7■■□□□ 1.38
BRCC3-205ENST00000399026 SENP3Q9H4L4 574 aaPredicted RBP21.06■□□□□ 0.96
BRCC3-205ENST00000399026 PHF23Q9BUL5 403 aaPredicted RBP20.84■□□□□ 0.93
BRCC3-205ENST00000399026 NISCHQ9Y2I1 1504 aa20.31■□□□□ 0.84
BRCC3-205ENST00000399026 FOXD1Q16676 465 aa19.64■□□□□ 0.73
BRCC3-205ENST00000399026 PLPPR3Q6T4P5 718 aa19.01■□□□□ 0.63
BRCC3-205ENST00000399026 POTEDQ86YR6 584 aa18.66■□□□□ 0.58
BRCC3-205ENST00000399026 PPP6R1Q9UPN7 881 aa18.55■□□□□ 0.56
BRCC3-205ENST00000399026 ADRA2BP18089 450 aa18.49■□□□□ 0.55
BRCC3-205ENST00000399026 MSH5O43196 834 aa18.37■□□□□ 0.53
BRCC3-205ENST00000399026 PIAS4Q8N2W9 510 aaPredicted RBP18.37■□□□□ 0.53
BRCC3-205ENST00000399026 CCDC180Q9P1Z9 1646 aa18.09■□□□□ 0.49
BRCC3-205ENST00000399026 ABCC9O60706 1549 aa17.62■□□□□ 0.41
BRCC3-205ENST00000399026 ZCCHC6Q5VYS8 1495 aaKnown RBP16.97■□□□□ 0.31
BRCC3-205ENST00000399026 RB1CC1Q8TDY2 1594 aa16.96■□□□□ 0.31
BRCC3-205ENST00000399026 MAPK8IP2Q13387 824 aaPredicted RBP16.93■□□□□ 0.3
BRCC3-205ENST00000399026 NACADO15069 1562 aa16.92■□□□□ 0.3
BRCC3-205ENST00000399026 DCAF8L2P0C7V8 631 aa16.88■□□□□ 0.29
BRCC3-205ENST00000399026 SCAF1Q9H7N4 1312 aaKnown RBP16.87■□□□□ 0.29
BRCC3-205ENST00000399026 MYO15BQ96JP2 1530 aa16.8■□□□□ 0.28
BRCC3-205ENST00000399026 DCAF1Q9Y4B6 1507 aa16.78■□□□□ 0.28
BRCC3-205ENST00000399026 DMRT2Q9Y5R5 561 aa16.75■□□□□ 0.27
BRCC3-205ENST00000399026 PPP4R3CPQ6ZMV5 832 aa16.72■□□□□ 0.27
BRCC3-205ENST00000399026 UNC13AQ9UPW8 1703 aa16.68■□□□□ 0.26
BRCC3-205ENST00000399026 SCRIBQ14160 1630 aa16.56■□□□□ 0.24
BRCC3-205ENST00000399026 BICRAQ9NZM4 1560 aa16.47■□□□□ 0.23
BRCC3-205ENST00000399026 PABPN1Q86U42 306 aaKnown RBP eCLIP16.41■□□□□ 0.22
BRCC3-205ENST00000399026 CNKSR2Q8WXI2 1034 aa16.33■□□□□ 0.2
BRCC3-205ENST00000399026 SHROOM4Q9ULL8 1493 aa16.23■□□□□ 0.19
BRCC3-205ENST00000399026 HOXD11P31277 338 aaPredicted RBP16.21■□□□□ 0.19
BRCC3-205ENST00000399026 RNF216Q9NWF9 866 aaPredicted RBP16.13■□□□□ 0.17
BRCC3-205ENST00000399026 NCBP3Q53F19 620 aaKnown RBP16.11■□□□□ 0.17
BRCC3-205ENST00000399026 CACNB1Q02641 598 aaPredicted RBP16.07■□□□□ 0.16
BRCC3-205ENST00000399026 DCAF8L1A6NGE4 600 aa16.03■□□□□ 0.16
BRCC3-205ENST00000399026 EIF4G1Q04637 1599 aaKnown RBP16.03■□□□□ 0.16
BRCC3-205ENST00000399026 DNAJC5BQ9UF47 199 aa16.02■□□□□ 0.16
BRCC3-205ENST00000399026 CC2D2AQ9P2K1 1620 aa15.96■□□□□ 0.15
BRCC3-205ENST00000399026 NPM3O75607 178 aaKnown RBP15.91■□□□□ 0.14
BRCC3-205ENST00000399026 CECR2Q9BXF3 1484 aa15.84■□□□□ 0.13
BRCC3-205ENST00000399026 SMARCA4P51532 1647 aa15.8■□□□□ 0.12
BRCC3-205ENST00000399026 KCNA4P22459 653 aa15.8■□□□□ 0.12
BRCC3-205ENST00000399026 BAZ1AQ9NRL2 1556 aaPredicted RBP15.75■□□□□ 0.11
BRCC3-205ENST00000399026 MROH2BQ7Z745 1585 aa15.68■□□□□ 0.1
BRCC3-205ENST00000399026 RNF39Q9H2S5 420 aa15.65■□□□□ 0.1
BRCC3-205ENST00000399026 ATAD2BQ9ULI0 1458 aa15.64■□□□□ 0.09
BRCC3-205ENST00000399026 SMARCA2P51531 1590 aa15.63■□□□□ 0.09
BRCC3-205ENST00000399026 PEG3Q9GZU2 1588 aa15.6■□□□□ 0.09
BRCC3-205ENST00000399026 HMGXB3Q12766 1538 aa15.58■□□□□ 0.09
BRCC3-205ENST00000399026 NCAPD3P42695 1498 aa15.57■□□□□ 0.08
BRCC3-205ENST00000399026 WIZO95785 1651 aa15.56■□□□□ 0.08
BRCC3-205ENST00000399026 BAZ1BQ9UIG0 1483 aaKnown RBP15.54■□□□□ 0.08
BRCC3-205ENST00000399026 RSF1Q96T23 1441 aaPredicted RBP15.48■□□□□ 0.07
BRCC3-205ENST00000399026 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.44■□□□□ 0.06
BRCC3-205ENST00000399026 C1QBPQ07021 282 aaKnown RBP15.39■□□□□ 0.05
BRCC3-205ENST00000399026 TOP2AP11388 1531 aaKnown RBP15.38■□□□□ 0.05
BRCC3-205ENST00000399026 NESP48681 1621 aa15.28■□□□□ 0.04
BRCC3-205ENST00000399026 LAMC3Q9Y6N6 1575 aa15.22■□□□□ 0.03
BRCC3-205ENST00000399026 KIF21AQ7Z4S6 1674 aa15.17■□□□□ 0.02
BRCC3-205ENST00000399026 ERCC6Q03468 1493 aa15.17■□□□□ 0.02
BRCC3-205ENST00000399026 SLC4A2P04920 1241 aa15.16■□□□□ 0.02
BRCC3-205ENST00000399026 U3KPZ7 1027 aaPredicted RBP15.15■□□□□ 0.02
BRCC3-205ENST00000399026 CCDC88BA6NC98 1476 aa15.14■□□□□ 0.01
BRCC3-205ENST00000399026 SUPT5HO00267 1087 aaKnown RBP15.12■□□□□ 0.01
BRCC3-205ENST00000399026 CADPSQ9ULU8 1353 aa15.11■□□□□ 0.01
BRCC3-205ENST00000399026 PRDM2Q13029 1718 aa15.11■□□□□ 0.01
BRCC3-205ENST00000399026 THOC2Q8NI27 1593 aaKnown RBP15.08■□□□□ 0
BRCC3-205ENST00000399026 CFTRP13569 1480 aa15.08■□□□□ 0
BRCC3-205ENST00000399026 PDS5BQ9NTI5 1447 aa15.05■□□□□ -0
BRCC3-205ENST00000399026 FANCD2Q9BXW9 1451 aa15.01□□□□□ -0.01
BRCC3-205ENST00000399026 CEP164Q9UPV0 1460 aa15□□□□□ -0.01
BRCC3-205ENST00000399026 MRC2Q9UBG0 1479 aa14.96□□□□□ -0.01
BRCC3-205ENST00000399026 CUX2O14529 1486 aa14.95□□□□□ -0.02
BRCC3-205ENST00000399026 WDR62O43379 1518 aa14.93□□□□□ -0.02
BRCC3-205ENST00000399026 SLC4A1APQ9BWU0 796 aaKnown RBP14.93□□□□□ -0.02
BRCC3-205ENST00000399026 URB2Q14146 1524 aaKnown RBP14.88□□□□□ -0.03
BRCC3-205ENST00000399026 SPINK5Q9NQ38 1064 aaPredicted RBP14.88□□□□□ -0.03
BRCC3-205ENST00000399026 CAPN15O75808 1086 aa14.81□□□□□ -0.04
BRCC3-205ENST00000399026 DNMBPQ6XZF7 1577 aa14.8□□□□□ -0.04
BRCC3-205ENST00000399026 TOPBP1Q92547 1522 aa14.79□□□□□ -0.04
BRCC3-205ENST00000399026 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.75□□□□□ -0.05
BRCC3-205ENST00000399026 HNRNPUL2Q1KMD3 747 aaKnown RBP14.75□□□□□ -0.05
BRCC3-205ENST00000399026 CUX1P39880 1505 aa14.72□□□□□ -0.05
BRCC3-205ENST00000399026 ABCC8Q09428 1581 aa14.7□□□□□ -0.06
BRCC3-205ENST00000399026 DSG3P32926 999 aa14.7□□□□□ -0.06
BRCC3-205ENST00000399026 APLP2Q06481 763 aa14.69□□□□□ -0.06
BRCC3-205ENST00000399026 SAMD1Q6SPF0 538 aaPredicted RBP14.69□□□□□ -0.06
BRCC3-205ENST00000399026 MYCNP04198 464 aaPredicted RBP14.68□□□□□ -0.06
BRCC3-205ENST00000399026 POLA1P09884 1462 aaPredicted RBP14.67□□□□□ -0.06
BRCC3-205ENST00000399026 FGD5Q6ZNL6 1462 aa14.66□□□□□ -0.06
BRCC3-205ENST00000399026 SYNJ1O43426 1573 aa14.65□□□□□ -0.06
BRCC3-205ENST00000399026 IFT140Q96RY7 1462 aa14.65□□□□□ -0.06
BRCC3-205ENST00000399026 TARBP1Q13395 1621 aaKnown RBP14.65□□□□□ -0.06
BRCC3-205ENST00000399026 TRHP20396 242 aaPredicted RBP14.64□□□□□ -0.07
BRCC3-205ENST00000399026 FOXD4L1Q9NU39 408 aa14.64□□□□□ -0.07
BRCC3-205ENST00000399026 BIVM-ERCC5R4GMW8 1640 aa14.63□□□□□ -0.07
BRCC3-205ENST00000399026 EIF4G3O43432 1585 aaKnown RBP14.63□□□□□ -0.07
BRCC3-205ENST00000399026 ZNF608Q9ULD9 1512 aaPredicted RBP14.62□□□□□ -0.07
BRCC3-205ENST00000399026 WDR97A6NE52 1622 aa14.61□□□□□ -0.07
BRCC3-205ENST00000399026 TOP2BQ02880 1626 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms