RNA–Protein interactions for RNA: ENST00000398896.5

USP19-204, Transcript of ubiquitin specific peptidase 19, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene USP19, Length 3,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP19-204ENST00000398896 PELP1Q8IZL8 1130 aaKnown RBP18.38■□□□□ 0.53
USP19-204ENST00000398896 MYT1Q01538 1121 aa17.96■□□□□ 0.47
USP19-204ENST00000398896 NISCHQ9Y2I1 1504 aa17.84■□□□□ 0.45
USP19-204ENST00000398896 HRCP23327 699 aa17.77■□□□□ 0.44
USP19-204ENST00000398896 PCGF6Q9BYE7 350 aa17.48■□□□□ 0.39
USP19-204ENST00000398896 PPARGC1BQ86YN6 1023 aaKnown RBP17.41■□□□□ 0.38
USP19-204ENST00000398896 SUPT5HO00267 1087 aaKnown RBP17.15■□□□□ 0.34
USP19-204ENST00000398896 SCAF1Q9H7N4 1312 aaKnown RBP17.09■□□□□ 0.33
USP19-204ENST00000398896 ZEB1P37275 1124 aaPredicted RBP16.94■□□□□ 0.3
USP19-204ENST00000398896 TTBK1Q5TCY1 1321 aaPredicted RBP16.89■□□□□ 0.29
USP19-204ENST00000398896 SHROOM4Q9ULL8 1493 aa16.81■□□□□ 0.28
USP19-204ENST00000398896 CENPBP07199 599 aaPredicted RBP16.79■□□□□ 0.28
USP19-204ENST00000398896 TRIM26Q12899 539 aaPredicted RBP16.72■□□□□ 0.27
USP19-204ENST00000398896 GTF3C3Q9Y5Q9 886 aa16.65■□□□□ 0.26
USP19-204ENST00000398896 ACIN1Q9UKV3 1341 aaKnown RBP16.64■□□□□ 0.25
USP19-204ENST00000398896 CHIC1Q5VXU3 224 aa16.6■□□□□ 0.25
USP19-204ENST00000398896 NEUROD1Q13562 356 aa16.5■□□□□ 0.23
USP19-204ENST00000398896 BCL11AQ9H165 835 aa16.46■□□□□ 0.23
USP19-204ENST00000398896 LOC105371045A0A1W2PR82 267 aa16.39■□□□□ 0.21
USP19-204ENST00000398896 DCAF1Q9Y4B6 1507 aa16.3■□□□□ 0.2
USP19-204ENST00000398896 MYO15BQ96JP2 1530 aa16.28■□□□□ 0.2
USP19-204ENST00000398896 DIEXFQ68CQ4 756 aaKnown RBP16.26■□□□□ 0.19
USP19-204ENST00000398896 YTHDC1Q96MU7 727 aaKnown RBP16.26■□□□□ 0.19
USP19-204ENST00000398896 CCER1Q8TC90 406 aaPredicted RBP16.25■□□□□ 0.19
USP19-204ENST00000398896 ERICH6Q7L0X2 663 aa16.2■□□□□ 0.18
USP19-204ENST00000398896 FAM9AQ8IZU1 332 aaPredicted RBP16.18■□□□□ 0.18
USP19-204ENST00000398896 PRKCSHP14314 528 aaPredicted RBP16.17■□□□□ 0.18
USP19-204ENST00000398896 ANP32EQ9BTT0 268 aa16.09■□□□□ 0.17
USP19-204ENST00000398896 DCAF8L2P0C7V8 631 aa16.05■□□□□ 0.16
USP19-204ENST00000398896 EHMT2Q96KQ7 1210 aa16.02■□□□□ 0.16
USP19-204ENST00000398896 CCDC180Q9P1Z9 1646 aa16■□□□□ 0.15
USP19-204ENST00000398896 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16■□□□□ 0.15
USP19-204ENST00000398896 CSRNP3Q8WYN3 585 aa15.87■□□□□ 0.13
USP19-204ENST00000398896 TRIM41Q8WV44 630 aa15.8■□□□□ 0.12
USP19-204ENST00000398896 ZNF316A6NFI3 1004 aaPredicted RBP15.79■□□□□ 0.12
USP19-204ENST00000398896 CLSPNQ9HAW4 1339 aa15.7■□□□□ 0.1
USP19-204ENST00000398896 MIER1Q8N108 512 aa15.63■□□□□ 0.09
USP19-204ENST00000398896 TSHZ2Q9NRE2 1034 aa15.61■□□□□ 0.09
USP19-204ENST00000398896 NEFLP07196 543 aa15.57■□□□□ 0.08
USP19-204ENST00000398896 SUPT16HQ9Y5B9 1047 aaKnown RBP15.55■□□□□ 0.08
USP19-204ENST00000398896 APLP2Q06481 763 aa15.53■□□□□ 0.08
USP19-204ENST00000398896 BCANQ96GW7 911 aa15.51■□□□□ 0.07
USP19-204ENST00000398896 MYT1LQ9UL68 1186 aa15.37■□□□□ 0.05
USP19-204ENST00000398896 ANO8Q9HCE9 1232 aaPredicted RBP15.36■□□□□ 0.05
USP19-204ENST00000398896 FKBP8Q14318 412 aa15.32■□□□□ 0.04
USP19-204ENST00000398896 HNRNPUL2Q1KMD3 747 aaKnown RBP15.3■□□□□ 0.04
USP19-204ENST00000398896 RBM19Q9Y4C8 960 aaKnown RBP15.29■□□□□ 0.04
USP19-204ENST00000398896 DEKP35659 375 aaKnown RBP15.24■□□□□ 0.03
USP19-204ENST00000398896 CDK11AQ9UQ88 783 aaPredicted RBP15.21■□□□□ 0.03
USP19-204ENST00000398896 CCDC136Q96JN2 1154 aa15.2■□□□□ 0.02
USP19-204ENST00000398896 RTL5Q5HYW3 569 aaPredicted RBP15.17■□□□□ 0.02
USP19-204ENST00000398896 ITGAEP38570 1179 aa15.14■□□□□ 0.01
USP19-204ENST00000398896 EIF5BO60841 1220 aaKnown RBP15.13■□□□□ 0.01
USP19-204ENST00000398896 UBTFP17480 764 aaKnown RBP15.13■□□□□ 0.01
USP19-204ENST00000398896 SALL2Q9Y467 1007 aaPredicted RBP15.12■□□□□ 0.01
USP19-204ENST00000398896 ZCCHC6Q5VYS8 1495 aaKnown RBP15.12■□□□□ 0.01
USP19-204ENST00000398896 ERICH6BQ5W0A0 696 aa15.09■□□□□ 0.01
USP19-204ENST00000398896 NBR1Q14596 966 aa15.08■□□□□ 0.01
USP19-204ENST00000398896 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.08■□□□□ 0.01
USP19-204ENST00000398896 RTN4Q9NQC3 1192 aaKnown RBP15.06■□□□□ 0
USP19-204ENST00000398896 UBE2Q2Q8WVN8 375 aa15.04■□□□□ -0
USP19-204ENST00000398896 MSH5O43196 834 aa14.98□□□□□ -0.01
USP19-204ENST00000398896 FANCIQ9NVI1 1328 aa14.93□□□□□ -0.02
USP19-204ENST00000398896 TRIM52Q96A61 297 aa14.91□□□□□ -0.02
USP19-204ENST00000398896 PKNOX2Q96KN3 472 aa14.87□□□□□ -0.03
USP19-204ENST00000398896 ANP32CO43423 234 aa14.86□□□□□ -0.03
USP19-204ENST00000398896 GLIPR1L2Q4G1C9 344 aa14.86□□□□□ -0.03
USP19-204ENST00000398896 ANP32AP39687 249 aaKnown RBP14.85□□□□□ -0.03
USP19-204ENST00000398896 NOP58Q9Y2X3 529 aaKnown RBP14.84□□□□□ -0.03
USP19-204ENST00000398896 DDX10Q13206 875 aaKnown RBP14.83□□□□□ -0.04
USP19-204ENST00000398896 SLC24A1O60721 1099 aa14.82□□□□□ -0.04
USP19-204ENST00000398896 RANGAP1P46060 587 aaPredicted RBP14.82□□□□□ -0.04
USP19-204ENST00000398896 IL27Q8NEV9 243 aa14.81□□□□□ -0.04
USP19-204ENST00000398896 IRX6P78412 446 aaPredicted RBP14.8□□□□□ -0.04
USP19-204ENST00000398896 ZBTB47Q9UFB7 747 aaPredicted RBP14.79□□□□□ -0.04
USP19-204ENST00000398896 KCNH8Q96L42 1107 aa14.78□□□□□ -0.04
USP19-204ENST00000398896 CEP162Q5TB80 1403 aa14.73□□□□□ -0.05
USP19-204ENST00000398896 HNRNPUQ00839 825 aaKnown RBP eCLIP14.71□□□□□ -0.05
USP19-204ENST00000398896 PODXL2Q9NZ53 605 aa14.69□□□□□ -0.06
USP19-204ENST00000398896 PPP4R2Q9NY27 417 aa14.68□□□□□ -0.06
USP19-204ENST00000398896 WRNQ14191 1432 aaPredicted RBP eCLIP14.67□□□□□ -0.06
USP19-204ENST00000398896 DAXXQ9UER7 740 aaPredicted RBP14.65□□□□□ -0.06
USP19-204ENST00000398896 RSF1Q96T23 1441 aaPredicted RBP14.64□□□□□ -0.07
USP19-204ENST00000398896 NPM2Q86SE8 214 aaKnown RBP14.6□□□□□ -0.07
USP19-204ENST00000398896 TNIKQ9UKE5 1360 aa14.6□□□□□ -0.07
USP19-204ENST00000398896 CCER2I3L3R5 266 aa14.6□□□□□ -0.07
USP19-204ENST00000398896 NEFMP07197 916 aa14.59□□□□□ -0.07
USP19-204ENST00000398896 TIMELESSQ9UNS1 1208 aa14.59□□□□□ -0.07
USP19-204ENST00000398896 B4GALNT3Q6L9W6 998 aa14.58□□□□□ -0.08
USP19-204ENST00000398896 VSIG10Q8N0Z9 540 aa14.58□□□□□ -0.08
USP19-204ENST00000398896 PLEKHG5O94827 1062 aa14.56□□□□□ -0.08
USP19-204ENST00000398896 PAK3O75914 559 aaPredicted RBP14.56□□□□□ -0.08
USP19-204ENST00000398896 IPO9Q96P70 1041 aaKnown RBP14.55□□□□□ -0.08
USP19-204ENST00000398896 RSPH6AQ9H0K4 717 aa14.52□□□□□ -0.08
USP19-204ENST00000398896 HIRIP3Q9BW71 556 aaPredicted RBP14.52□□□□□ -0.09
USP19-204ENST00000398896 LAS1LQ9Y4W2 734 aaKnown RBP14.51□□□□□ -0.09
USP19-204ENST00000398896 PPM1GO15355 546 aaPredicted RBP14.5□□□□□ -0.09
USP19-204ENST00000398896 DHX57Q6P158 1386 aaKnown RBP14.46□□□□□ -0.09
USP19-204ENST00000398896 USP35Q9P2H5 1018 aa14.46□□□□□ -0.1
USP19-204ENST00000398896 RB1CC1Q8TDY2 1594 aa14.46□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms