RNA–Protein interactions for RNA: ENST00000397938.6

EWSR1-206, Transcript of EWS RNA binding protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene EWSR1, Length 2,654 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EWSR1-206ENST00000397938 NISCHQ9Y2I1 1504 aa34.4■■■■□ 3.1
EWSR1-206ENST00000397938 SHROOM4Q9ULL8 1493 aa29.71■■■□□ 2.35
EWSR1-206ENST00000397938 SUPT5HO00267 1087 aaKnown RBP29.39■■■□□ 2.3
EWSR1-206ENST00000397938 ZCCHC6Q5VYS8 1495 aaKnown RBP29.25■■■□□ 2.27
EWSR1-206ENST00000397938 HRCP23327 699 aa29.08■■■□□ 2.25
EWSR1-206ENST00000397938 MYO15BQ96JP2 1530 aa29.03■■■□□ 2.24
EWSR1-206ENST00000397938 CCDC180Q9P1Z9 1646 aa29.01■■■□□ 2.24
EWSR1-206ENST00000397938 CHIC1Q5VXU3 224 aa28.91■■■□□ 2.22
EWSR1-206ENST00000397938 PCGF6Q9BYE7 350 aa28.6■■■□□ 2.17
EWSR1-206ENST00000397938 DCAF1Q9Y4B6 1507 aa28.44■■■□□ 2.14
EWSR1-206ENST00000397938 PPARGC1BQ86YN6 1023 aaKnown RBP28.34■■■□□ 2.13
EWSR1-206ENST00000397938 DCAF8L2P0C7V8 631 aa28.22■■■□□ 2.11
EWSR1-206ENST00000397938 LOC105371045A0A1W2PR82 267 aa28.05■■■□□ 2.08
EWSR1-206ENST00000397938 TRIM26Q12899 539 aaPredicted RBP27.95■■■□□ 2.06
EWSR1-206ENST00000397938 ABCC9O60706 1549 aa27.74■■■□□ 2.03
EWSR1-206ENST00000397938 ZEB1P37275 1124 aaPredicted RBP27.62■■■□□ 2.01
EWSR1-206ENST00000397938 RSF1Q96T23 1441 aaPredicted RBP27.45■■□□□ 1.98
EWSR1-206ENST00000397938 PELP1Q8IZL8 1130 aaKnown RBP27.37■■□□□ 1.97
EWSR1-206ENST00000397938 TRIM41Q8WV44 630 aa27.34■■□□□ 1.97
EWSR1-206ENST00000397938 RB1CC1Q8TDY2 1594 aa27.3■■□□□ 1.96
EWSR1-206ENST00000397938 SCRIBQ14160 1630 aa27.27■■□□□ 1.96
EWSR1-206ENST00000397938 SCAF1Q9H7N4 1312 aaKnown RBP27.17■■□□□ 1.94
EWSR1-206ENST00000397938 FAM9AQ8IZU1 332 aaPredicted RBP27.13■■□□□ 1.93
EWSR1-206ENST00000397938 EHMT2Q96KQ7 1210 aa26.86■■□□□ 1.89
EWSR1-206ENST00000397938 CECR2Q9BXF3 1484 aa26.79■■□□□ 1.88
EWSR1-206ENST00000397938 MROH2BQ7Z745 1585 aa26.78■■□□□ 1.88
EWSR1-206ENST00000397938 ACIN1Q9UKV3 1341 aaKnown RBP26.71■■□□□ 1.87
EWSR1-206ENST00000397938 WIZO95785 1651 aa26.69■■□□□ 1.86
EWSR1-206ENST00000397938 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.68■■□□□ 1.86
EWSR1-206ENST00000397938 EIF4G1Q04637 1599 aaKnown RBP26.66■■□□□ 1.86
EWSR1-206ENST00000397938 CCER1Q8TC90 406 aaPredicted RBP26.65■■□□□ 1.86
EWSR1-206ENST00000397938 NACADO15069 1562 aa26.64■■□□□ 1.86
EWSR1-206ENST00000397938 BAZ1AQ9NRL2 1556 aaPredicted RBP26.6■■□□□ 1.85
EWSR1-206ENST00000397938 NEUROD1Q13562 356 aa26.6■■□□□ 1.85
EWSR1-206ENST00000397938 WRNQ14191 1432 aaPredicted RBP eCLIP26.5■■□□□ 1.83
EWSR1-206ENST00000397938 DIEXFQ68CQ4 756 aaKnown RBP26.49■■□□□ 1.83
EWSR1-206ENST00000397938 CENPBP07199 599 aaPredicted RBP26.44■■□□□ 1.82
EWSR1-206ENST00000397938 GTF3C3Q9Y5Q9 886 aa26.39■■□□□ 1.81
EWSR1-206ENST00000397938 CEP162Q5TB80 1403 aa26.33■■□□□ 1.8
EWSR1-206ENST00000397938 ABCC8Q09428 1581 aa26.3■■□□□ 1.8
EWSR1-206ENST00000397938 CCDC88BA6NC98 1476 aa26.29■■□□□ 1.8
EWSR1-206ENST00000397938 TOP2AP11388 1531 aaKnown RBP26.28■■□□□ 1.8
EWSR1-206ENST00000397938 TNIKQ9UKE5 1360 aa26.24■■□□□ 1.79
EWSR1-206ENST00000397938 MYT1Q01538 1121 aa26.18■■□□□ 1.78
EWSR1-206ENST00000397938 TTBK1Q5TCY1 1321 aaPredicted RBP26.18■■□□□ 1.78
EWSR1-206ENST00000397938 SMARCA2P51531 1590 aa26.16■■□□□ 1.78
EWSR1-206ENST00000397938 ZNF316A6NFI3 1004 aaPredicted RBP26.14■■□□□ 1.78
EWSR1-206ENST00000397938 SOGA1O94964 1423 aa26.14■■□□□ 1.78
EWSR1-206ENST00000397938 EEA1Q15075 1411 aa26.14■■□□□ 1.77
EWSR1-206ENST00000397938 SMARCA4P51532 1647 aa26.1■■□□□ 1.77
EWSR1-206ENST00000397938 CSRNP3Q8WYN3 585 aa26.01■■□□□ 1.76
EWSR1-206ENST00000397938 GOLGA3Q08378 1498 aa26■■□□□ 1.75
EWSR1-206ENST00000397938 RUSC2Q8N2Y8 1516 aa25.99■■□□□ 1.75
EWSR1-206ENST00000397938 UBTFP17480 764 aaKnown RBP25.94■■□□□ 1.74
EWSR1-206ENST00000397938 YTHDC1Q96MU7 727 aaKnown RBP25.87■■□□□ 1.73
EWSR1-206ENST00000397938 MIER1Q8N108 512 aa25.83■■□□□ 1.73
EWSR1-206ENST00000397938 KIF21BO75037 1637 aa25.79■■□□□ 1.72
EWSR1-206ENST00000397938 UNC13AQ9UPW8 1703 aa25.78■■□□□ 1.72
EWSR1-206ENST00000397938 CEP164Q9UPV0 1460 aa25.78■■□□□ 1.72
EWSR1-206ENST00000397938 HNRNPUL2Q1KMD3 747 aaKnown RBP25.73■■□□□ 1.71
EWSR1-206ENST00000397938 CLIP1P30622 1438 aa25.7■■□□□ 1.71
EWSR1-206ENST00000397938 VPS8Q8N3P4 1428 aa25.69■■□□□ 1.7
EWSR1-206ENST00000397938 SYNJ1O43426 1573 aa25.66■■□□□ 1.7
EWSR1-206ENST00000397938 BAZ1BQ9UIG0 1483 aaKnown RBP25.62■■□□□ 1.69
EWSR1-206ENST00000397938 PEG3Q9GZU2 1588 aa25.57■■□□□ 1.68
EWSR1-206ENST00000397938 APLP2Q06481 763 aa25.5■■□□□ 1.67
EWSR1-206ENST00000397938 RAPGEF2Q9Y4G8 1499 aa25.5■■□□□ 1.67
EWSR1-206ENST00000397938 CLSPNQ9HAW4 1339 aa25.48■■□□□ 1.67
EWSR1-206ENST00000397938 DHX57Q6P158 1386 aaKnown RBP25.4■■□□□ 1.66
EWSR1-206ENST00000397938 BICRAQ9NZM4 1560 aa25.39■■□□□ 1.65
EWSR1-206ENST00000397938 SUPT16HQ9Y5B9 1047 aaKnown RBP25.3■■□□□ 1.64
EWSR1-206ENST00000397938 TOP2BQ02880 1626 aa25.29■■□□□ 1.64
EWSR1-206ENST00000397938 ERICH3Q5RHP9 1530 aa25.26■■□□□ 1.64
EWSR1-206ENST00000397938 ARAP1Q96P48 1450 aa25.25■■□□□ 1.63
EWSR1-206ENST00000397938 ATAD2BQ9ULI0 1458 aa25.25■■□□□ 1.63
EWSR1-206ENST00000397938 RANGAP1P46060 587 aaPredicted RBP25.24■■□□□ 1.63
EWSR1-206ENST00000397938 PABPN1Q86U42 306 aaKnown RBP eCLIP25.23■■□□□ 1.638e-9■□□□□ 10.7
EWSR1-206ENST00000397938 BIVM-ERCC5R4GMW8 1640 aa25.21■■□□□ 1.63
EWSR1-206ENST00000397938 RRBP1Q9P2E9 1410 aaKnown RBP25.19■■□□□ 1.62
EWSR1-206ENST00000397938 PRXQ9BXM0 1461 aa25.19■■□□□ 1.62
EWSR1-206ENST00000397938 CUX2O14529 1486 aa25.17■■□□□ 1.62
EWSR1-206ENST00000397938 KANK4Q5T7N3 995 aaPredicted RBP25.13■■□□□ 1.61
EWSR1-206ENST00000397938 TSHZ2Q9NRE2 1034 aa25.05■■□□□ 1.6
EWSR1-206ENST00000397938 CCNB3Q8WWL7 1395 aa25.02■■□□□ 1.6
EWSR1-206ENST00000397938 MAPKBP1O60336 1514 aa24.93■■□□□ 1.58
EWSR1-206ENST00000397938 ARHGAP35Q9NRY4 1499 aa24.92■■□□□ 1.58
EWSR1-206ENST00000397938 KIF27Q86VH2 1401 aa24.9■■□□□ 1.58
EWSR1-206ENST00000397938 CUX1P39880 1505 aa24.89■■□□□ 1.58
EWSR1-206ENST00000397938 ANP32EQ9BTT0 268 aa24.89■■□□□ 1.57
EWSR1-206ENST00000397938 RAB3GAP2Q9H2M9 1393 aa24.87■■□□□ 1.57
EWSR1-206ENST00000397938 KCNH8Q96L42 1107 aa24.87■■□□□ 1.57
EWSR1-206ENST00000397938 ITGAEP38570 1179 aa24.8■■□□□ 1.56
EWSR1-206ENST00000397938 MAP3K1Q13233 1512 aa24.79■■□□□ 1.56
EWSR1-206ENST00000397938 TIAM1Q13009 1591 aa24.78■■□□□ 1.56
EWSR1-206ENST00000397938 SETD5Q9C0A6 1442 aa24.75■■□□□ 1.55
EWSR1-206ENST00000397938 WDR97A6NE52 1622 aa24.75■■□□□ 1.55
EWSR1-206ENST00000397938 HMGXB3Q12766 1538 aa24.72■■□□□ 1.55
EWSR1-206ENST00000397938 FKBP8Q14318 412 aa24.69■■□□□ 1.54
EWSR1-206ENST00000397938 BCANQ96GW7 911 aa24.69■■□□□ 1.54
EWSR1-206ENST00000397938 DDX10Q13206 875 aaKnown RBP24.67■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms