RNA–Protein interactions for RNA: ENST00000397763.5

COL6A2-203, Transcript of collagen type VI alpha 2 chain, humanhuman

TSL 5 BASIC

Gene COL6A2, Length 3,101 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2-203ENST00000397763 NISCHQ9Y2I1 1504 aa27.11■■□□□ 1.93
COL6A2-203ENST00000397763 SHROOM4Q9ULL8 1493 aa24.18■■□□□ 1.46
COL6A2-203ENST00000397763 SUPT5HO00267 1087 aaKnown RBP23.87■■□□□ 1.41
COL6A2-203ENST00000397763 DCAF8L2P0C7V8 631 aa23.35■■□□□ 1.33
COL6A2-203ENST00000397763 MYO15BQ96JP2 1530 aa23.05■■□□□ 1.28
COL6A2-203ENST00000397763 CHIC1Q5VXU3 224 aa23.03■■□□□ 1.28
COL6A2-203ENST00000397763 PCGF6Q9BYE7 350 aa22.96■■□□□ 1.27
COL6A2-203ENST00000397763 ZCCHC6Q5VYS8 1495 aaKnown RBP22.92■■□□□ 1.26
COL6A2-203ENST00000397763 HRCP23327 699 aa22.87■■□□□ 1.25
COL6A2-203ENST00000397763 PPARGC1BQ86YN6 1023 aaKnown RBP22.8■■□□□ 1.24
COL6A2-203ENST00000397763 LOC105371045A0A1W2PR82 267 aa22.7■■□□□ 1.22
COL6A2-203ENST00000397763 CCDC180Q9P1Z9 1646 aa22.5■■□□□ 1.19
COL6A2-203ENST00000397763 EHMT2Q96KQ7 1210 aa22.31■■□□□ 1.16
COL6A2-203ENST00000397763 FAM9AQ8IZU1 332 aaPredicted RBP22.19■■□□□ 1.14
COL6A2-203ENST00000397763 DCAF1Q9Y4B6 1507 aa22.09■■□□□ 1.13
COL6A2-203ENST00000397763 TRIM26Q12899 539 aaPredicted RBP22.07■■□□□ 1.12
COL6A2-203ENST00000397763 TRIM41Q8WV44 630 aa21.95■■□□□ 1.1
COL6A2-203ENST00000397763 SCRIBQ14160 1630 aa21.77■■□□□ 1.08
COL6A2-203ENST00000397763 RSF1Q96T23 1441 aaPredicted RBP21.75■■□□□ 1.07
COL6A2-203ENST00000397763 ABCC9O60706 1549 aa21.67■■□□□ 1.06
COL6A2-203ENST00000397763 RB1CC1Q8TDY2 1594 aa21.62■■□□□ 1.05
COL6A2-203ENST00000397763 TTBK1Q5TCY1 1321 aaPredicted RBP21.6■■□□□ 1.05
COL6A2-203ENST00000397763 ZEB1P37275 1124 aaPredicted RBP21.54■■□□□ 1.04
COL6A2-203ENST00000397763 SCAF1Q9H7N4 1312 aaKnown RBP21.53■■□□□ 1.04
COL6A2-203ENST00000397763 PELP1Q8IZL8 1130 aaKnown RBP21.51■■□□□ 1.03
COL6A2-203ENST00000397763 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.5■■□□□ 1.03
COL6A2-203ENST00000397763 CECR2Q9BXF3 1484 aa21.45■■□□□ 1.02
COL6A2-203ENST00000397763 CCER1Q8TC90 406 aaPredicted RBP21.34■■□□□ 1.01
COL6A2-203ENST00000397763 MROH2BQ7Z745 1585 aa21.28■■□□□ 1
COL6A2-203ENST00000397763 WIZO95785 1651 aa21.18■□□□□ 0.98
COL6A2-203ENST00000397763 NEUROD1Q13562 356 aa21.12■□□□□ 0.97
COL6A2-203ENST00000397763 DIEXFQ68CQ4 756 aaKnown RBP21.03■□□□□ 0.96
COL6A2-203ENST00000397763 ACIN1Q9UKV3 1341 aaKnown RBP21■□□□□ 0.95
COL6A2-203ENST00000397763 ABCC8Q09428 1581 aa21■□□□□ 0.95
COL6A2-203ENST00000397763 UBTFP17480 764 aaKnown RBP20.97■□□□□ 0.95
COL6A2-203ENST00000397763 GTF3C3Q9Y5Q9 886 aa20.96■□□□□ 0.95
COL6A2-203ENST00000397763 CCDC88BA6NC98 1476 aa20.95■□□□□ 0.94
COL6A2-203ENST00000397763 YTHDC1Q96MU7 727 aaKnown RBP20.92■□□□□ 0.94
COL6A2-203ENST00000397763 SOGA1O94964 1423 aa20.9■□□□□ 0.94
COL6A2-203ENST00000397763 RANGAP1P46060 587 aaPredicted RBP20.89■□□□□ 0.94
COL6A2-203ENST00000397763 NACADO15069 1562 aa20.88■□□□□ 0.93
COL6A2-203ENST00000397763 CEP162Q5TB80 1403 aa20.84■□□□□ 0.93
COL6A2-203ENST00000397763 HNRNPUL2Q1KMD3 747 aaKnown RBP20.84■□□□□ 0.93
COL6A2-203ENST00000397763 RUSC2Q8N2Y8 1516 aa20.82■□□□□ 0.92
COL6A2-203ENST00000397763 CENPBP07199 599 aaPredicted RBP20.81■□□□□ 0.92
COL6A2-203ENST00000397763 BAZ1AQ9NRL2 1556 aaPredicted RBP20.79■□□□□ 0.92
COL6A2-203ENST00000397763 PABPN1Q86U42 306 aaKnown RBP eCLIP20.77■□□□□ 0.92
COL6A2-203ENST00000397763 CSRNP3Q8WYN3 585 aa20.76■□□□□ 0.91
COL6A2-203ENST00000397763 EIF4G1Q04637 1599 aaKnown RBP20.72■□□□□ 0.91
COL6A2-203ENST00000397763 ZNF316A6NFI3 1004 aaPredicted RBP20.67■□□□□ 0.9
COL6A2-203ENST00000397763 TNIKQ9UKE5 1360 aa20.63■□□□□ 0.89
COL6A2-203ENST00000397763 MIER1Q8N108 512 aa20.62■□□□□ 0.89
COL6A2-203ENST00000397763 WRNQ14191 1432 aaPredicted RBP eCLIP20.61■□□□□ 0.89
COL6A2-203ENST00000397763 TOP2AP11388 1531 aaKnown RBP20.6■□□□□ 0.89
COL6A2-203ENST00000397763 SMARCA2P51531 1590 aa20.6■□□□□ 0.89
COL6A2-203ENST00000397763 SMARCA4P51532 1647 aa20.55■□□□□ 0.88
COL6A2-203ENST00000397763 MYT1Q01538 1121 aa20.53■□□□□ 0.88
COL6A2-203ENST00000397763 APLP2Q06481 763 aa20.46■□□□□ 0.87
COL6A2-203ENST00000397763 GOLGA3Q08378 1498 aa20.45■□□□□ 0.86
COL6A2-203ENST00000397763 CLIP1P30622 1438 aa20.39■□□□□ 0.85
COL6A2-203ENST00000397763 EEA1Q15075 1411 aa20.35■□□□□ 0.85
COL6A2-203ENST00000397763 UNC13AQ9UPW8 1703 aa20.31■□□□□ 0.84
COL6A2-203ENST00000397763 SYNJ1O43426 1573 aa20.29■□□□□ 0.84
COL6A2-203ENST00000397763 RAPGEF2Q9Y4G8 1499 aa20.29■□□□□ 0.84
COL6A2-203ENST00000397763 ITGAEP38570 1179 aa20.28■□□□□ 0.84
COL6A2-203ENST00000397763 CEP164Q9UPV0 1460 aa20.26■□□□□ 0.83
COL6A2-203ENST00000397763 VPS8Q8N3P4 1428 aa20.22■□□□□ 0.83
COL6A2-203ENST00000397763 KANK4Q5T7N3 995 aaPredicted RBP20.21■□□□□ 0.83
COL6A2-203ENST00000397763 KIF21BO75037 1637 aa20.1■□□□□ 0.81
COL6A2-203ENST00000397763 BICRAQ9NZM4 1560 aa20.09■□□□□ 0.81
COL6A2-203ENST00000397763 DHX57Q6P158 1386 aaKnown RBP20.06■□□□□ 0.8
COL6A2-203ENST00000397763 BAZ1BQ9UIG0 1483 aaKnown RBP20.06■□□□□ 0.8
COL6A2-203ENST00000397763 KCNH8Q96L42 1107 aa20.05■□□□□ 0.8
COL6A2-203ENST00000397763 ATAD2BQ9ULI0 1458 aa20.04■□□□□ 0.8
COL6A2-203ENST00000397763 SUPT16HQ9Y5B9 1047 aaKnown RBP19.98■□□□□ 0.79
COL6A2-203ENST00000397763 BCANQ96GW7 911 aa19.95■□□□□ 0.78
COL6A2-203ENST00000397763 ARAP1Q96P48 1450 aa19.92■□□□□ 0.78
COL6A2-203ENST00000397763 HIRIP3Q9BW71 556 aaPredicted RBP19.92■□□□□ 0.78
COL6A2-203ENST00000397763 ATP1B4Q9UN42 357 aaPredicted RBP19.92■□□□□ 0.78
COL6A2-203ENST00000397763 P3H3Q8IVL6 736 aa19.87■□□□□ 0.77
COL6A2-203ENST00000397763 PEG3Q9GZU2 1588 aa19.87■□□□□ 0.77
COL6A2-203ENST00000397763 SIN3AQ96ST3 1273 aa19.85■□□□□ 0.77
COL6A2-203ENST00000397763 DDX10Q13206 875 aaKnown RBP19.82■□□□□ 0.76
COL6A2-203ENST00000397763 FAM50AQ14320 339 aaKnown RBP19.82■□□□□ 0.76
COL6A2-203ENST00000397763 TOP2BQ02880 1626 aa19.82■□□□□ 0.76
COL6A2-203ENST00000397763 PRXQ9BXM0 1461 aa19.81■□□□□ 0.76
COL6A2-203ENST00000397763 CCNB3Q8WWL7 1395 aa19.8■□□□□ 0.76
COL6A2-203ENST00000397763 CLSPNQ9HAW4 1339 aa19.78■□□□□ 0.76
COL6A2-203ENST00000397763 RAB3GAP2Q9H2M9 1393 aa19.76■□□□□ 0.75
COL6A2-203ENST00000397763 TSHZ2Q9NRE2 1034 aa19.75■□□□□ 0.75
COL6A2-203ENST00000397763 CUX1P39880 1505 aa19.73■□□□□ 0.75
COL6A2-203ENST00000397763 KIF27Q86VH2 1401 aa19.72■□□□□ 0.75
COL6A2-203ENST00000397763 ARHGAP35Q9NRY4 1499 aa19.71■□□□□ 0.75
COL6A2-203ENST00000397763 RRBP1Q9P2E9 1410 aaKnown RBP19.71■□□□□ 0.75
COL6A2-203ENST00000397763 FKBP8Q14318 412 aa19.69■□□□□ 0.74
COL6A2-203ENST00000397763 TRIM52Q96A61 297 aa19.69■□□□□ 0.74
COL6A2-203ENST00000397763 ERICH3Q5RHP9 1530 aa19.67■□□□□ 0.74
COL6A2-203ENST00000397763 ANP32EQ9BTT0 268 aa19.66■□□□□ 0.74
COL6A2-203ENST00000397763 BIVM-ERCC5R4GMW8 1640 aa19.63■□□□□ 0.73
COL6A2-203ENST00000397763 CUX2O14529 1486 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms