RNA–Protein interactions for RNA: ENST00000397035.7

ATP2A3-204, Transcript of ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3, humanhuman

TSL 5 BASIC

Gene ATP2A3, Length 4,182 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATP2A3-204ENST00000397035 NISCHQ9Y2I1 1504 aa26.49■■□□□ 1.83
ATP2A3-204ENST00000397035 SUPT5HO00267 1087 aaKnown RBP25.63■■□□□ 1.69
ATP2A3-204ENST00000397035 SHROOM4Q9ULL8 1493 aa25.41■■□□□ 1.66
ATP2A3-204ENST00000397035 DCAF8L2P0C7V8 631 aa25.38■■□□□ 1.65
ATP2A3-204ENST00000397035 PCGF6Q9BYE7 350 aa24.9■■□□□ 1.58
ATP2A3-204ENST00000397035 EHMT2Q96KQ7 1210 aa24.51■■□□□ 1.51
ATP2A3-204ENST00000397035 HRCP23327 699 aa24.4■■□□□ 1.5
ATP2A3-204ENST00000397035 PPARGC1BQ86YN6 1023 aaKnown RBP24.33■■□□□ 1.48
ATP2A3-204ENST00000397035 FAM9AQ8IZU1 332 aaPredicted RBP24.03■■□□□ 1.44
ATP2A3-204ENST00000397035 CHIC1Q5VXU3 224 aa23.87■■□□□ 1.41
ATP2A3-204ENST00000397035 LOC105371045A0A1W2PR82 267 aa23.86■■□□□ 1.41
ATP2A3-204ENST00000397035 PELP1Q8IZL8 1130 aaKnown RBP23.78■■□□□ 1.4
ATP2A3-204ENST00000397035 TTBK1Q5TCY1 1321 aaPredicted RBP23.78■■□□□ 1.4
ATP2A3-204ENST00000397035 TRIM26Q12899 539 aaPredicted RBP23.61■■□□□ 1.37
ATP2A3-204ENST00000397035 ZEB1P37275 1124 aaPredicted RBP23.6■■□□□ 1.37
ATP2A3-204ENST00000397035 CCER1Q8TC90 406 aaPredicted RBP23.49■■□□□ 1.35
ATP2A3-204ENST00000397035 TRIM41Q8WV44 630 aa23.45■■□□□ 1.35
ATP2A3-204ENST00000397035 CENPBP07199 599 aaPredicted RBP23.41■■□□□ 1.34
ATP2A3-204ENST00000397035 YTHDC1Q96MU7 727 aaKnown RBP23.37■■□□□ 1.33
ATP2A3-204ENST00000397035 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.09■■□□□ 1.29
ATP2A3-204ENST00000397035 MYO15BQ96JP2 1530 aa23.05■■□□□ 1.28
ATP2A3-204ENST00000397035 GTF3C3Q9Y5Q9 886 aa22.94■■□□□ 1.26
ATP2A3-204ENST00000397035 MYT1Q01538 1121 aa22.93■■□□□ 1.26
ATP2A3-204ENST00000397035 RANGAP1P46060 587 aaPredicted RBP22.93■■□□□ 1.26
ATP2A3-204ENST00000397035 SCAF1Q9H7N4 1312 aaKnown RBP22.92■■□□□ 1.26
ATP2A3-204ENST00000397035 DIEXFQ68CQ4 756 aaKnown RBP22.88■■□□□ 1.25
ATP2A3-204ENST00000397035 APLP2Q06481 763 aa22.82■■□□□ 1.24
ATP2A3-204ENST00000397035 UBTFP17480 764 aaKnown RBP22.75■■□□□ 1.23
ATP2A3-204ENST00000397035 ACIN1Q9UKV3 1341 aaKnown RBP22.74■■□□□ 1.23
ATP2A3-204ENST00000397035 NEUROD1Q13562 356 aa22.64■■□□□ 1.22
ATP2A3-204ENST00000397035 DCAF1Q9Y4B6 1507 aa22.61■■□□□ 1.21
ATP2A3-204ENST00000397035 HNRNPUL2Q1KMD3 747 aaKnown RBP22.6■■□□□ 1.21
ATP2A3-204ENST00000397035 ERICH6Q7L0X2 663 aa22.3■■□□□ 1.16
ATP2A3-204ENST00000397035 ZNF316A6NFI3 1004 aaPredicted RBP22.26■■□□□ 1.15
ATP2A3-204ENST00000397035 ITGAEP38570 1179 aa22.22■■□□□ 1.15
ATP2A3-204ENST00000397035 ZCCHC6Q5VYS8 1495 aaKnown RBP22.22■■□□□ 1.15
ATP2A3-204ENST00000397035 NEFLP07196 543 aa22.21■■□□□ 1.15
ATP2A3-204ENST00000397035 BCANQ96GW7 911 aa22.2■■□□□ 1.15
ATP2A3-204ENST00000397035 ATP1B4Q9UN42 357 aaPredicted RBP22.09■■□□□ 1.13
ATP2A3-204ENST00000397035 CCDC180Q9P1Z9 1646 aa22.02■■□□□ 1.12
ATP2A3-204ENST00000397035 MIER1Q8N108 512 aa22.01■■□□□ 1.11
ATP2A3-204ENST00000397035 CNGB1Q14028 1251 aaPredicted RBP21.74■■□□□ 1.07
ATP2A3-204ENST00000397035 CSRNP3Q8WYN3 585 aa21.69■■□□□ 1.06
ATP2A3-204ENST00000397035 FKBP8Q14318 412 aa21.65■■□□□ 1.06
ATP2A3-204ENST00000397035 RSF1Q96T23 1441 aaPredicted RBP21.57■■□□□ 1.04
ATP2A3-204ENST00000397035 SCRIBQ14160 1630 aa21.56■■□□□ 1.04
ATP2A3-204ENST00000397035 FAM50AQ14320 339 aaKnown RBP21.5■■□□□ 1.03
ATP2A3-204ENST00000397035 POLR3GLQ9BT43 218 aa21.5■■□□□ 1.03
ATP2A3-204ENST00000397035 DDX10Q13206 875 aaKnown RBP21.47■■□□□ 1.03
ATP2A3-204ENST00000397035 TRIM52Q96A61 297 aa21.45■■□□□ 1.02
ATP2A3-204ENST00000397035 ABCC9O60706 1549 aa21.45■■□□□ 1.02
ATP2A3-204ENST00000397035 SUPT16HQ9Y5B9 1047 aaKnown RBP21.43■■□□□ 1.02
ATP2A3-204ENST00000397035 ANP32CO43423 234 aa21.41■■□□□ 1.02
ATP2A3-204ENST00000397035 ANP32EQ9BTT0 268 aa21.41■■□□□ 1.02
ATP2A3-204ENST00000397035 PABPN1Q86U42 306 aaKnown RBP eCLIP21.39■■□□□ 1.02
ATP2A3-204ENST00000397035 HIRIP3Q9BW71 556 aaPredicted RBP21.39■■□□□ 1.02
ATP2A3-204ENST00000397035 CEP162Q5TB80 1403 aa21.39■■□□□ 1.01
ATP2A3-204ENST00000397035 CDK11AQ9UQ88 783 aaPredicted RBP21.38■■□□□ 1.01
ATP2A3-204ENST00000397035 CLSPNQ9HAW4 1339 aa21.32■■□□□ 1
ATP2A3-204ENST00000397035 IRX6P78412 446 aaPredicted RBP21.32■■□□□ 1
ATP2A3-204ENST00000397035 RTL5Q5HYW3 569 aaPredicted RBP21.26■□□□□ 0.99
ATP2A3-204ENST00000397035 BCL11AQ9H165 835 aa21.25■□□□□ 0.99
ATP2A3-204ENST00000397035 RB1CC1Q8TDY2 1594 aa21.23■□□□□ 0.99
ATP2A3-204ENST00000397035 HNRNPUQ00839 825 aaKnown RBP eCLIP21.19■□□□□ 0.98
ATP2A3-204ENST00000397035 P3H3Q8IVL6 736 aa21.18■□□□□ 0.98
ATP2A3-204ENST00000397035 TSHZ2Q9NRE2 1034 aa21.17■□□□□ 0.98
ATP2A3-204ENST00000397035 NBR1Q14596 966 aa21.13■□□□□ 0.97
ATP2A3-204ENST00000397035 CLIP1P30622 1438 aa21.12■□□□□ 0.97
ATP2A3-204ENST00000397035 CECR2Q9BXF3 1484 aa21.09■□□□□ 0.97
ATP2A3-204ENST00000397035 SOGA1O94964 1423 aa21.08■□□□□ 0.97
ATP2A3-204ENST00000397035 TNIKQ9UKE5 1360 aa21.08■□□□□ 0.96
ATP2A3-204ENST00000397035 DAXXQ9UER7 740 aaPredicted RBP21.04■□□□□ 0.96
ATP2A3-204ENST00000397035 KCNH8Q96L42 1107 aa21.03■□□□□ 0.96
ATP2A3-204ENST00000397035 FAM9BQ8IZU0 186 aa21.01■□□□□ 0.95
ATP2A3-204ENST00000397035 NPM2Q86SE8 214 aaKnown RBP21■□□□□ 0.95
ATP2A3-204ENST00000397035 RBM19Q9Y4C8 960 aaKnown RBP20.99■□□□□ 0.95
ATP2A3-204ENST00000397035 SENP3-EIF4A1A0A087X0R7 540 aa20.96■□□□□ 0.95
ATP2A3-204ENST00000397035 ZNF326Q5BKZ1 582 aaKnown RBP20.96■□□□□ 0.95
ATP2A3-204ENST00000397035 SIN3AQ96ST3 1273 aa20.96■□□□□ 0.95
ATP2A3-204ENST00000397035 GOLGA3Q08378 1498 aa20.95■□□□□ 0.94
ATP2A3-204ENST00000397035 CCDC88BA6NC98 1476 aa20.92■□□□□ 0.94
ATP2A3-204ENST00000397035 ABCC8Q09428 1581 aa20.9■□□□□ 0.94
ATP2A3-204ENST00000397035 TONSLQ96HA7 1378 aa20.89■□□□□ 0.93
ATP2A3-204ENST00000397035 ANP32AP39687 249 aaKnown RBP20.89■□□□□ 0.93
ATP2A3-204ENST00000397035 ARID3CA6NKF2 412 aa20.83■□□□□ 0.93
ATP2A3-204ENST00000397035 MROH2BQ7Z745 1585 aa20.83■□□□□ 0.92
ATP2A3-204ENST00000397035 KANK4Q5T7N3 995 aaPredicted RBP20.79■□□□□ 0.92
ATP2A3-204ENST00000397035 EEA1Q15075 1411 aa20.78■□□□□ 0.92
ATP2A3-204ENST00000397035 SALL2Q9Y467 1007 aaPredicted RBP20.78■□□□□ 0.92
ATP2A3-204ENST00000397035 MRS2Q9HD23 443 aa20.76■□□□□ 0.91
ATP2A3-204ENST00000397035 WRNQ14191 1432 aaPredicted RBP eCLIP20.76■□□□□ 0.91
ATP2A3-204ENST00000397035 EIF5BO60841 1220 aaKnown RBP20.75■□□□□ 0.91
ATP2A3-204ENST00000397035 CCDC136Q96JN2 1154 aa20.74■□□□□ 0.91
ATP2A3-204ENST00000397035 B4GALNT3Q6L9W6 998 aa20.73■□□□□ 0.91
ATP2A3-204ENST00000397035 CHIC2Q9UKJ5 165 aa20.72■□□□□ 0.91
ATP2A3-204ENST00000397035 RUSC2Q8N2Y8 1516 aa20.71■□□□□ 0.91
ATP2A3-204ENST00000397035 ZBTB47Q9UFB7 747 aaPredicted RBP20.71■□□□□ 0.91
ATP2A3-204ENST00000397035 RTN4Q9NQC3 1192 aaKnown RBP20.71■□□□□ 0.91
ATP2A3-204ENST00000397035 CEP164Q9UPV0 1460 aa20.69■□□□□ 0.9
ATP2A3-204ENST00000397035 DEKP35659 375 aaKnown RBP20.64■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms