RNA–Protein interactions for RNA: ENST00000394633.7

PCDHA1-202, Transcript of protocadherin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene PCDHA1, Length 2,204 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-202ENST00000394633 NISCHQ9Y2I1 1504 aa38.98■■■■□ 3.83
PCDHA1-202ENST00000394633 CCDC180Q9P1Z9 1646 aa33.96■■■■□ 3.03
PCDHA1-202ENST00000394633 ZCCHC6Q5VYS8 1495 aaKnown RBP32.75■■■□□ 2.83
PCDHA1-202ENST00000394633 ABCC9O60706 1549 aa32.36■■■□□ 2.77
PCDHA1-202ENST00000394633 DCAF8L2P0C7V8 631 aa32.32■■■□□ 2.76
PCDHA1-202ENST00000394633 DCAF1Q9Y4B6 1507 aa32.13■■■□□ 2.73
PCDHA1-202ENST00000394633 SHROOM4Q9ULL8 1493 aa32.1■■■□□ 2.73
PCDHA1-202ENST00000394633 MYO15BQ96JP2 1530 aa31.75■■■□□ 2.67
PCDHA1-202ENST00000394633 NACADO15069 1562 aa31.64■■■□□ 2.66
PCDHA1-202ENST00000394633 SUPT5HO00267 1087 aaKnown RBP31.56■■■□□ 2.64
PCDHA1-202ENST00000394633 RB1CC1Q8TDY2 1594 aa31.41■■■□□ 2.62
PCDHA1-202ENST00000394633 SCRIBQ14160 1630 aa31.38■■■□□ 2.61
PCDHA1-202ENST00000394633 UNC13AQ9UPW8 1703 aa30.93■■■□□ 2.54
PCDHA1-202ENST00000394633 CHIC1Q5VXU3 224 aa30.86■■■□□ 2.53
PCDHA1-202ENST00000394633 BICRAQ9NZM4 1560 aa30.59■■■□□ 2.49
PCDHA1-202ENST00000394633 PABPN1Q86U42 306 aaKnown RBP eCLIP30.53■■■□□ 2.48
PCDHA1-202ENST00000394633 CECR2Q9BXF3 1484 aa30.4■■■□□ 2.46
PCDHA1-202ENST00000394633 HRCP23327 699 aa30.33■■■□□ 2.45
PCDHA1-202ENST00000394633 RSF1Q96T23 1441 aaPredicted RBP30.25■■■□□ 2.43
PCDHA1-202ENST00000394633 MROH2BQ7Z745 1585 aa30.19■■■□□ 2.42
PCDHA1-202ENST00000394633 PCGF6Q9BYE7 350 aa30.11■■■□□ 2.41
PCDHA1-202ENST00000394633 BAZ1AQ9NRL2 1556 aaPredicted RBP30.07■■■□□ 2.4
PCDHA1-202ENST00000394633 SMARCA4P51532 1647 aa30.01■■■□□ 2.39
PCDHA1-202ENST00000394633 WIZO95785 1651 aa29.95■■■□□ 2.39
PCDHA1-202ENST00000394633 LOC105371045A0A1W2PR82 267 aa29.94■■■□□ 2.38
PCDHA1-202ENST00000394633 PPARGC1BQ86YN6 1023 aaKnown RBP29.64■■■□□ 2.34
PCDHA1-202ENST00000394633 EIF4G1Q04637 1599 aaKnown RBP29.64■■■□□ 2.34
PCDHA1-202ENST00000394633 PEG3Q9GZU2 1588 aa29.59■■■□□ 2.33
PCDHA1-202ENST00000394633 TOP2AP11388 1531 aaKnown RBP29.54■■■□□ 2.32
PCDHA1-202ENST00000394633 ATAD2BQ9ULI0 1458 aa29.53■■■□□ 2.32
PCDHA1-202ENST00000394633 TRIM26Q12899 539 aaPredicted RBP29.51■■■□□ 2.31
PCDHA1-202ENST00000394633 SMARCA2P51531 1590 aa29.44■■■□□ 2.3
PCDHA1-202ENST00000394633 TRIM41Q8WV44 630 aa29.39■■■□□ 2.29
PCDHA1-202ENST00000394633 BAZ1BQ9UIG0 1483 aaKnown RBP29.34■■■□□ 2.29
PCDHA1-202ENST00000394633 CCDC88BA6NC98 1476 aa29.28■■■□□ 2.28
PCDHA1-202ENST00000394633 CC2D2AQ9P2K1 1620 aa29.24■■■□□ 2.27
PCDHA1-202ENST00000394633 NCAPD3P42695 1498 aa29.23■■■□□ 2.27
PCDHA1-202ENST00000394633 HMGXB3Q12766 1538 aa29.19■■■□□ 2.26
PCDHA1-202ENST00000394633 FAM9AQ8IZU1 332 aaPredicted RBP29.14■■■□□ 2.26
PCDHA1-202ENST00000394633 ZEB1P37275 1124 aaPredicted RBP28.96■■■□□ 2.23
PCDHA1-202ENST00000394633 EHMT2Q96KQ7 1210 aa28.87■■■□□ 2.21
PCDHA1-202ENST00000394633 ABCC8Q09428 1581 aa28.73■■■□□ 2.19
PCDHA1-202ENST00000394633 DNAJC5BQ9UF47 199 aa28.72■■■□□ 2.19
PCDHA1-202ENST00000394633 CFTRP13569 1480 aa28.6■■■□□ 2.17
PCDHA1-202ENST00000394633 CADPSQ9ULU8 1353 aa28.5■■■□□ 2.15
PCDHA1-202ENST00000394633 WRNQ14191 1432 aaPredicted RBP eCLIP28.45■■■□□ 2.14
PCDHA1-202ENST00000394633 PRDM2Q13029 1718 aa28.43■■■□□ 2.14
PCDHA1-202ENST00000394633 NESP48681 1621 aa28.42■■■□□ 2.14
PCDHA1-202ENST00000394633 SYNJ1O43426 1573 aa28.41■■■□□ 2.14
PCDHA1-202ENST00000394633 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.26■■■□□ 2.11
PCDHA1-202ENST00000394633 LAMC3Q9Y6N6 1575 aa28.25■■■□□ 2.11
PCDHA1-202ENST00000394633 SOGA1O94964 1423 aa28.25■■■□□ 2.11
PCDHA1-202ENST00000394633 CEP162Q5TB80 1403 aa28.24■■■□□ 2.11
PCDHA1-202ENST00000394633 FANCD2Q9BXW9 1451 aa28.22■■■□□ 2.11
PCDHA1-202ENST00000394633 CUX1P39880 1505 aa28.22■■■□□ 2.11
PCDHA1-202ENST00000394633 TOP2BQ02880 1626 aa28.22■■■□□ 2.11
PCDHA1-202ENST00000394633 CCER1Q8TC90 406 aaPredicted RBP28.19■■■□□ 2.1
PCDHA1-202ENST00000394633 BIVM-ERCC5R4GMW8 1640 aa28.18■■■□□ 2.1
PCDHA1-202ENST00000394633 TNIKQ9UKE5 1360 aa28.17■■■□□ 2.1
PCDHA1-202ENST00000394633 EEA1Q15075 1411 aa28.15■■■□□ 2.1
PCDHA1-202ENST00000394633 RUSC2Q8N2Y8 1516 aa28.12■■■□□ 2.09
PCDHA1-202ENST00000394633 SCAF1Q9H7N4 1312 aaKnown RBP28.09■■■□□ 2.09
PCDHA1-202ENST00000394633 CSRNP3Q8WYN3 585 aa28.06■■■□□ 2.08
PCDHA1-202ENST00000394633 KIF21AQ7Z4S6 1674 aa28.04■■■□□ 2.08
PCDHA1-202ENST00000394633 CEP164Q9UPV0 1460 aa28.03■■■□□ 2.08
PCDHA1-202ENST00000394633 TTBK1Q5TCY1 1321 aaPredicted RBP28.02■■■□□ 2.08
PCDHA1-202ENST00000394633 PDS5BQ9NTI5 1447 aa28.01■■■□□ 2.08
PCDHA1-202ENST00000394633 GOLGA3Q08378 1498 aa27.98■■■□□ 2.07
PCDHA1-202ENST00000394633 UBTFP17480 764 aaKnown RBP27.94■■■□□ 2.06
PCDHA1-202ENST00000394633 DNMBPQ6XZF7 1577 aa27.92■■■□□ 2.06
PCDHA1-202ENST00000394633 URB2Q14146 1524 aaKnown RBP27.92■■■□□ 2.06
PCDHA1-202ENST00000394633 TOPBP1Q92547 1522 aa27.91■■■□□ 2.06
PCDHA1-202ENST00000394633 FGD5Q6ZNL6 1462 aa27.91■■■□□ 2.06
PCDHA1-202ENST00000394633 KIF21BO75037 1637 aa27.84■■■□□ 2.05
PCDHA1-202ENST00000394633 POLA1P09884 1462 aaPredicted RBP27.8■■■□□ 2.04
PCDHA1-202ENST00000394633 DIEXFQ68CQ4 756 aaKnown RBP27.79■■■□□ 2.04
PCDHA1-202ENST00000394633 PELP1Q8IZL8 1130 aaKnown RBP27.75■■■□□ 2.03
PCDHA1-202ENST00000394633 ACIN1Q9UKV3 1341 aaKnown RBP27.75■■■□□ 2.03
PCDHA1-202ENST00000394633 RAD54L2Q9Y4B4 1467 aa27.74■■■□□ 2.03
PCDHA1-202ENST00000394633 CUX2O14529 1486 aa27.7■■■□□ 2.03
PCDHA1-202ENST00000394633 MRC2Q9UBG0 1479 aa27.7■■■□□ 2.02
PCDHA1-202ENST00000394633 KIF27Q86VH2 1401 aa27.69■■■□□ 2.02
PCDHA1-202ENST00000394633 NEUROD1Q13562 356 aa27.68■■■□□ 2.02
PCDHA1-202ENST00000394633 ERCC6Q03468 1493 aa27.68■■■□□ 2.02
PCDHA1-202ENST00000394633 CLIP1P30622 1438 aa27.65■■■□□ 2.02
PCDHA1-202ENST00000394633 ABCA10Q8WWZ4 1543 aa27.61■■■□□ 2.01
PCDHA1-202ENST00000394633 WDR62O43379 1518 aa27.58■■■□□ 2.01
PCDHA1-202ENST00000394633 VPS8Q8N3P4 1428 aa27.58■■■□□ 2.01
PCDHA1-202ENST00000394633 WDR97A6NE52 1622 aa27.57■■■□□ 2
PCDHA1-202ENST00000394633 RAPGEF2Q9Y4G8 1499 aa27.57■■■□□ 2
PCDHA1-202ENST00000394633 THOC2Q8NI27 1593 aaKnown RBP27.56■■■□□ 2
PCDHA1-202ENST00000394633 ZNF316A6NFI3 1004 aaPredicted RBP27.54■■■□□ 2
PCDHA1-202ENST00000394633 PRXQ9BXM0 1461 aa27.52■■■□□ 2
PCDHA1-202ENST00000394633 TARBP1Q13395 1621 aaKnown RBP27.52■■■□□ 2
PCDHA1-202ENST00000394633 CENPBP07199 599 aaPredicted RBP27.51■■□□□ 1.99
PCDHA1-202ENST00000394633 IGF1RP08069 1367 aa27.5■■□□□ 1.99
PCDHA1-202ENST00000394633 HNRNPUL2Q1KMD3 747 aaKnown RBP27.48■■□□□ 1.99
PCDHA1-202ENST00000394633 TDRD9Q8NDG6 1382 aaKnown RBP27.47■■□□□ 1.99
PCDHA1-202ENST00000394633 ABCA5Q8WWZ7 1642 aa27.43■■□□□ 1.98
PCDHA1-202ENST00000394633 ERICH3Q5RHP9 1530 aa27.41■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 112.4 ms