RNA–Protein interactions for RNA: ENST00000394106.6

CMTM4-202, Transcript of CKLF like MARVEL transmembrane domain containing 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CMTM4, Length 1,187 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM4-202ENST00000394106 KRTAP4-9Q9BYQ8 210 aa10.8□□□□□ -0.68
CMTM4-202ENST00000394106 PSPHP1O15172 72 aa10.79□□□□□ -0.68
CMTM4-202ENST00000394106 V9GYY9 64 aa10.78□□□□□ -0.68
CMTM4-202ENST00000394106 Q1T7F1 81 aa10.71□□□□□ -0.69
CMTM4-202ENST00000394106 K7ERS5 55 aa10.69□□□□□ -0.7
CMTM4-202ENST00000394106 KRTAP12-3P60328 96 aa10.67□□□□□ -0.7
CMTM4-202ENST00000394106 KRTAP4-3Q9BYR4 195 aa10.66□□□□□ -0.7
CMTM4-202ENST00000394106 KRTAP25-1Q3LHN0 102 aa10.6□□□□□ -0.71
CMTM4-202ENST00000394106 LCE1DQ5T752 114 aa10.46□□□□□ -0.73
CMTM4-202ENST00000394106 LCE4AQ5TA78 99 aa10.46□□□□□ -0.73
CMTM4-202ENST00000394106 KRTAP4-7Q9BYR0 210 aa10.46□□□□□ -0.73
CMTM4-202ENST00000394106 A6NED7 52 aa10.42□□□□□ -0.74
CMTM4-202ENST00000394106 MT4P47944 62 aa10.39□□□□□ -0.75
CMTM4-202ENST00000394106 HMCN1Q96RW7 5635 aa10.32□□□□□ -0.76
CMTM4-202ENST00000394106 KRTAP5-4Q6L8H1 288 aa10.27□□□□□ -0.77
CMTM4-202ENST00000394106 AHNAK2Q8IVF2 5795 aa10.23□□□□□ -0.77
CMTM4-202ENST00000394106 RPS28P62857 69 aaKnown RBP10.18□□□□□ -0.78
CMTM4-202ENST00000394106 KRTAP23-1A1A580 65 aa10.16□□□□□ -0.78
CMTM4-202ENST00000394106 PCP4P48539 62 aa10.16□□□□□ -0.78
CMTM4-202ENST00000394106 CDC42SE1Q9NRR8 79 aa10.13□□□□□ -0.79
CMTM4-202ENST00000394106 KRTAP4-6Q9BYQ5 205 aa10.08□□□□□ -0.8
CMTM4-202ENST00000394106 KRTAP5-10Q6L8G5 202 aa10.03□□□□□ -0.8
CMTM4-202ENST00000394106 KRTAP15-1Q3LI76 137 aa10.01□□□□□ -0.81
CMTM4-202ENST00000394106 KRTAP19-4Q3LI73 84 aa9.99□□□□□ -0.81
CMTM4-202ENST00000394106 ROMO1P60602 79 aa9.97□□□□□ -0.81
CMTM4-202ENST00000394106 KRTAP5-5Q701N2 237 aaPredicted RBP9.94□□□□□ -0.82
CMTM4-202ENST00000394106 LOC100996750A0A140TA64 210 aa9.9□□□□□ -0.82
CMTM4-202ENST00000394106 LCE3CQ5T5A8 94 aa9.84□□□□□ -0.83
CMTM4-202ENST00000394106 KRTAP20-2Q3LI61 65 aa9.72□□□□□ -0.85
CMTM4-202ENST00000394106 KRTAP12-4P60329 112 aa9.69□□□□□ -0.86
CMTM4-202ENST00000394106 KRTAP5-7Q6L8G8 165 aa9.69□□□□□ -0.86
CMTM4-202ENST00000394106 SPRR5A0A1B0GTR4 108 aa9.66□□□□□ -0.86
CMTM4-202ENST00000394106 KRTAP5-3Q6L8H2 238 aa9.64□□□□□ -0.87
CMTM4-202ENST00000394106 SYNE1Q8NF91 8797 aaKnown RBP9.42□□□□□ -0.9
CMTM4-202ENST00000394106 MT1AP04731 61 aa9.32□□□□□ -0.92
CMTM4-202ENST00000394106 KRTAP9-6A8MVA2 160 aa9.27□□□□□ -0.93
CMTM4-202ENST00000394106 KRTAP6-1Q3LI64 71 aa9.27□□□□□ -0.93
CMTM4-202ENST00000394106 BRK1Q8WUW1 75 aa9.03□□□□□ -0.96
CMTM4-202ENST00000394106 KRTAP5-2Q701N4 177 aa9.02□□□□□ -0.97
CMTM4-202ENST00000394106 KRTAP9-4Q9BYQ2 154 aa8.99□□□□□ -0.97
CMTM4-202ENST00000394106 KRTAP6-2Q3LI66 62 aa8.84□□□□□ -0.99
CMTM4-202ENST00000394106 KRTAP4-11Q9BYQ6 195 aa8.84□□□□□ -0.99
CMTM4-202ENST00000394106 KRTAP5-8O75690 187 aa8.53□□□□□ -1.04
CMTM4-202ENST00000394106 MT3P25713 68 aa8.52□□□□□ -1.05
CMTM4-202ENST00000394106 AHNAKQ09666 5890 aaKnown RBP8.51□□□□□ -1.05
CMTM4-202ENST00000394106 MUC5ACP98088 5654 aa8.5□□□□□ -1.05
CMTM4-202ENST00000394106 PMAIP1Q13794 54 aa8.47□□□□□ -1.05
CMTM4-202ENST00000394106 MUC5BQ9HC84 5762 aaPredicted RBP8.43□□□□□ -1.06
CMTM4-202ENST00000394106 OBSCNQ5VST9 7968 aa8.28□□□□□ -1.08
CMTM4-202ENST00000394106 PRAC1Q96KF2 57 aa8.19□□□□□ -1.1
CMTM4-202ENST00000394106 KRTAP9-9Q9BYP9 154 aa8.09□□□□□ -1.11
CMTM4-202ENST00000394106 KRTAP5-1Q6L8H4 278 aa8.07□□□□□ -1.12
CMTM4-202ENST00000394106 PRO0628Q9UI54 55 aa7.82□□□□□ -1.16
CMTM4-202ENST00000394106 LCE1EQ5T753 118 aa7.75□□□□□ -1.17
CMTM4-202ENST00000394106 KTN1-AS1Q86SY8 53 aa7.5□□□□□ -1.21
CMTM4-202ENST00000394106 LCE1BQ5T7P3 118 aa7.38□□□□□ -1.23
CMTM4-202ENST00000394106 KRTAP4-2Q9BYR5 136 aa7.34□□□□□ -1.23
CMTM4-202ENST00000394106 SVIPQ8NHG7 77 aa7.28□□□□□ -1.24
CMTM4-202ENST00000394106 LCE1CQ5T751 118 aa7.21□□□□□ -1.26
CMTM4-202ENST00000394106 LCE3DQ9BYE3 92 aa7.11□□□□□ -1.27
CMTM4-202ENST00000394106 LUZP6Q538Z0 58 aa6.89□□□□□ -1.31
CMTM4-202ENST00000394106 LCE3EQ5T5B0 92 aa6.71□□□□□ -1.34
CMTM4-202ENST00000394106 KRTAP4-12Q9BQ66 201 aa6.67□□□□□ -1.34
CMTM4-202ENST00000394106 KRTAP5-6Q6L8G9 129 aaPredicted RBP6.55□□□□□ -1.36
CMTM4-202ENST00000394106 KRTAP5-11Q6L8G4 156 aa6.52□□□□□ -1.37
CMTM4-202ENST00000394106 LCE1FQ5T754 118 aa6.3□□□□□ -1.4
CMTM4-202ENST00000394106 KRTAP21-2Q3LI59 83 aa6.08□□□□□ -1.44
CMTM4-202ENST00000394106 PHGR1C9JFL3 82 aa5.84□□□□□ -1.47
CMTM4-202ENST00000394106 KRTAP4-4Q9BYR3 166 aa5.62□□□□□ -1.51
CMTM4-202ENST00000394106 NDUFAF8A1L188 74 aa5.54□□□□□ -1.52
CMTM4-202ENST00000394106 MUC19Q7Z5P9 8384 aa5.16□□□□□ -1.58
CMTM4-202ENST00000394106 PRM1P04553 51 aa5.12□□□□□ -1.59
CMTM4-202ENST00000394106 INE1O15225 51 aa4.39□□□□□ -1.71
CMTM4-202ENST00000394106 KRTAP21-1Q3LI58 79 aa4.39□□□□□ -1.71
CMTM4-202ENST00000394106 A0A0A0MQY5 61 aa4.33□□□□□ -1.72
CMTM4-202ENST00000394106 H3BS24 57 aa4.02□□□□□ -1.77
CMTM4-202ENST00000394106 MUC16Q8WXI7 14507 aa3.68□□□□□ -1.82
Retrieved 77 of 20,778 RNA–protein pairs in 13.4 ms