RNA–Protein interactions for RNA: ENST00000393324.7

ME3-202, Transcript of malic enzyme 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ME3, Length 2,240 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ME3-202ENST00000393324 NISCHQ9Y2I1 1504 aa45.01■■■■■ 4.8
ME3-202ENST00000393324 CCDC180Q9P1Z9 1646 aa39■■■■□ 3.83
ME3-202ENST00000393324 ZCCHC6Q5VYS8 1495 aaKnown RBP37.86■■■■□ 3.65
ME3-202ENST00000393324 DCAF8L2P0C7V8 631 aa37.25■■■■□ 3.55
ME3-202ENST00000393324 DCAF1Q9Y4B6 1507 aa37.13■■■■□ 3.54
ME3-202ENST00000393324 SHROOM4Q9ULL8 1493 aa37.13■■■■□ 3.53
ME3-202ENST00000393324 ABCC9O60706 1549 aa36.72■■■■□ 3.47
ME3-202ENST00000393324 MYO15BQ96JP2 1530 aa36.54■■■■□ 3.44
ME3-202ENST00000393324 NACADO15069 1562 aa36.27■■■■□ 3.4
ME3-202ENST00000393324 SCRIBQ14160 1630 aa36.05■■■■□ 3.36
ME3-202ENST00000393324 SUPT5HO00267 1087 aaKnown RBP35.91■■■■□ 3.34
ME3-202ENST00000393324 RB1CC1Q8TDY2 1594 aa35.89■■■■□ 3.34
ME3-202ENST00000393324 UNC13AQ9UPW8 1703 aa35.25■■■■□ 3.23
ME3-202ENST00000393324 RSF1Q96T23 1441 aaPredicted RBP35.09■■■■□ 3.21
ME3-202ENST00000393324 CECR2Q9BXF3 1484 aa35.01■■■■□ 3.2
ME3-202ENST00000393324 BICRAQ9NZM4 1560 aa34.84■■■■□ 3.17
ME3-202ENST00000393324 MROH2BQ7Z745 1585 aa34.83■■■■□ 3.17
ME3-202ENST00000393324 PABPN1Q86U42 306 aaKnown RBP eCLIP34.75■■■■□ 3.15
ME3-202ENST00000393324 BAZ1AQ9NRL2 1556 aaPredicted RBP34.71■■■■□ 3.15
ME3-202ENST00000393324 WIZO95785 1651 aa34.58■■■■□ 3.13
ME3-202ENST00000393324 SMARCA4P51532 1647 aa34.52■■■■□ 3.12
ME3-202ENST00000393324 CHIC1Q5VXU3 224 aa34.51■■■■□ 3.11
ME3-202ENST00000393324 TOP2AP11388 1531 aaKnown RBP34.15■■■■□ 3.06
ME3-202ENST00000393324 PEG3Q9GZU2 1588 aa34.04■■■■□ 3.04
ME3-202ENST00000393324 SMARCA2P51531 1590 aa33.88■■■■□ 3.01
ME3-202ENST00000393324 ATAD2BQ9ULI0 1458 aa33.88■■■■□ 3.01
ME3-202ENST00000393324 CCDC88BA6NC98 1476 aa33.87■■■■□ 3.01
ME3-202ENST00000393324 EIF4G1Q04637 1599 aaKnown RBP33.76■■■■□ 3
ME3-202ENST00000393324 BAZ1BQ9UIG0 1483 aaKnown RBP33.72■■■□□ 2.99
ME3-202ENST00000393324 TRIM41Q8WV44 630 aa33.69■■■□□ 2.98
ME3-202ENST00000393324 NCAPD3P42695 1498 aa33.5■■■□□ 2.95
ME3-202ENST00000393324 HMGXB3Q12766 1538 aa33.46■■■□□ 2.95
ME3-202ENST00000393324 ABCC8Q09428 1581 aa33.32■■■□□ 2.92
ME3-202ENST00000393324 LOC105371045A0A1W2PR82 267 aa33.28■■■□□ 2.92
ME3-202ENST00000393324 CC2D2AQ9P2K1 1620 aa33.19■■■□□ 2.9
ME3-202ENST00000393324 FAM9AQ8IZU1 332 aaPredicted RBP33.16■■■□□ 2.9
ME3-202ENST00000393324 WRNQ14191 1432 aaPredicted RBP eCLIP33.02■■■□□ 2.88
ME3-202ENST00000393324 SYNJ1O43426 1573 aa32.87■■■□□ 2.85
ME3-202ENST00000393324 CFTRP13569 1480 aa32.87■■■□□ 2.85
ME3-202ENST00000393324 SOGA1O94964 1423 aa32.77■■■□□ 2.84
ME3-202ENST00000393324 EHMT2Q96KQ7 1210 aa32.74■■■□□ 2.83
ME3-202ENST00000393324 CADPSQ9ULU8 1353 aa32.7■■■□□ 2.83
ME3-202ENST00000393324 PRDM2Q13029 1718 aa32.69■■■□□ 2.82
ME3-202ENST00000393324 TOP2BQ02880 1626 aa32.67■■■□□ 2.82
ME3-202ENST00000393324 EEA1Q15075 1411 aa32.67■■■□□ 2.82
ME3-202ENST00000393324 RUSC2Q8N2Y8 1516 aa32.64■■■□□ 2.82
ME3-202ENST00000393324 BIVM-ERCC5R4GMW8 1640 aa32.61■■■□□ 2.81
ME3-202ENST00000393324 CSRNP3Q8WYN3 585 aa32.55■■■□□ 2.8
ME3-202ENST00000393324 CUX1P39880 1505 aa32.53■■■□□ 2.8
ME3-202ENST00000393324 DNAJC5BQ9UF47 199 aa32.36■■■□□ 2.77
ME3-202ENST00000393324 NESP48681 1621 aa32.35■■■□□ 2.77
ME3-202ENST00000393324 FANCD2Q9BXW9 1451 aa32.35■■■□□ 2.77
ME3-202ENST00000393324 LAMC3Q9Y6N6 1575 aa32.29■■■□□ 2.76
ME3-202ENST00000393324 GOLGA3Q08378 1498 aa32.28■■■□□ 2.76
ME3-202ENST00000393324 TNIKQ9UKE5 1360 aa32.25■■■□□ 2.75
ME3-202ENST00000393324 CEP164Q9UPV0 1460 aa32.25■■■□□ 2.75
ME3-202ENST00000393324 KIF21BO75037 1637 aa32.24■■■□□ 2.75
ME3-202ENST00000393324 UBTFP17480 764 aaKnown RBP32.23■■■□□ 2.75
ME3-202ENST00000393324 KIF27Q86VH2 1401 aa32.14■■■□□ 2.74
ME3-202ENST00000393324 CEP162Q5TB80 1403 aa32.14■■■□□ 2.74
ME3-202ENST00000393324 PCGF6Q9BYE7 350 aa32.13■■■□□ 2.73
ME3-202ENST00000393324 FGD5Q6ZNL6 1462 aa32.12■■■□□ 2.73
ME3-202ENST00000393324 DNMBPQ6XZF7 1577 aa32.09■■■□□ 2.73
ME3-202ENST00000393324 RAPGEF2Q9Y4G8 1499 aa32.07■■■□□ 2.72
ME3-202ENST00000393324 PDS5BQ9NTI5 1447 aa32.06■■■□□ 2.72
ME3-202ENST00000393324 TOPBP1Q92547 1522 aa32.03■■■□□ 2.72
ME3-202ENST00000393324 PRXQ9BXM0 1461 aa32■■■□□ 2.71
ME3-202ENST00000393324 CUX2O14529 1486 aa32■■■□□ 2.71
ME3-202ENST00000393324 TRIM26Q12899 539 aaPredicted RBP31.96■■■□□ 2.71
ME3-202ENST00000393324 ERICH3Q5RHP9 1530 aa31.96■■■□□ 2.71
ME3-202ENST00000393324 KIF21AQ7Z4S6 1674 aa31.93■■■□□ 2.7
ME3-202ENST00000393324 URB2Q14146 1524 aaKnown RBP31.93■■■□□ 2.7
ME3-202ENST00000393324 POLA1P09884 1462 aaPredicted RBP31.91■■■□□ 2.7
ME3-202ENST00000393324 RAD54L2Q9Y4B4 1467 aa31.85■■■□□ 2.69
ME3-202ENST00000393324 IGF1RP08069 1367 aa31.84■■■□□ 2.69
ME3-202ENST00000393324 ABCA10Q8WWZ4 1543 aa31.81■■■□□ 2.68
ME3-202ENST00000393324 CLIP1P30622 1438 aa31.81■■■□□ 2.68
ME3-202ENST00000393324 PPARGC1BQ86YN6 1023 aaKnown RBP31.73■■■□□ 2.67
ME3-202ENST00000393324 CARMIL1Q5VZK9 1371 aa31.69■■■□□ 2.66
ME3-202ENST00000393324 RANGAP1P46060 587 aaPredicted RBP31.67■■■□□ 2.66
ME3-202ENST00000393324 WDR97A6NE52 1622 aa31.66■■■□□ 2.66
ME3-202ENST00000393324 MRC2Q9UBG0 1479 aa31.62■■■□□ 2.65
ME3-202ENST00000393324 VPS8Q8N3P4 1428 aa31.56■■■□□ 2.64
ME3-202ENST00000393324 TDRD9Q8NDG6 1382 aaKnown RBP31.53■■■□□ 2.64
ME3-202ENST00000393324 ABCA5Q8WWZ7 1642 aa31.52■■■□□ 2.64
ME3-202ENST00000393324 TARBP1Q13395 1621 aaKnown RBP31.51■■■□□ 2.63
ME3-202ENST00000393324 CUL7Q14999 1698 aa31.5■■■□□ 2.63
ME3-202ENST00000393324 GAPVD1Q14C86 1478 aa31.47■■■□□ 2.63
ME3-202ENST00000393324 ARAP1Q96P48 1450 aa31.43■■■□□ 2.62
ME3-202ENST00000393324 HRCP23327 699 aa31.43■■■□□ 2.62
ME3-202ENST00000393324 ERCC6Q03468 1493 aa31.42■■■□□ 2.62
ME3-202ENST00000393324 WDR62O43379 1518 aa31.42■■■□□ 2.62
ME3-202ENST00000393324 TTBK1Q5TCY1 1321 aaPredicted RBP31.41■■■□□ 2.62
ME3-202ENST00000393324 ARHGAP35Q9NRY4 1499 aa31.37■■■□□ 2.61
ME3-202ENST00000393324 APLP2Q06481 763 aa31.32■■■□□ 2.6
ME3-202ENST00000393324 IFT140Q96RY7 1462 aa31.29■■■□□ 2.6
ME3-202ENST00000393324 AQRO60306 1485 aaKnown RBP eCLIP31.26■■■□□ 2.59
ME3-202ENST00000393324 THOC2Q8NI27 1593 aaKnown RBP31.26■■■□□ 2.59
ME3-202ENST00000393324 PBRM1Q86U86 1689 aa31.25■■■□□ 2.59
ME3-202ENST00000393324 CTTNBP2Q8WZ74 1663 aa31.23■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms