RNA–Protein interactions for RNA: ENST00000391941.6

ERCC2-201, Transcript of ERCC excision repair 2, TFIIH core complex helicase subunit, humanhuman

TSL 1 (best)

Gene ERCC2, Length 2,871 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC2-201ENST00000391941 NISCHQ9Y2I1 1504 aa35.77■■■■□ 3.32
ERCC2-201ENST00000391941 SHROOM4Q9ULL8 1493 aa31.64■■■□□ 2.66
ERCC2-201ENST00000391941 SUPT5HO00267 1087 aaKnown RBP31.21■■■□□ 2.59
ERCC2-201ENST00000391941 MYO15BQ96JP2 1530 aa30.36■■■□□ 2.45
ERCC2-201ENST00000391941 DCAF8L2P0C7V8 631 aa30.35■■■□□ 2.45
ERCC2-201ENST00000391941 ZCCHC6Q5VYS8 1495 aaKnown RBP30.33■■■□□ 2.45
ERCC2-201ENST00000391941 CHIC1Q5VXU3 224 aa30.2■■■□□ 2.42
ERCC2-201ENST00000391941 PCGF6Q9BYE7 350 aa30.16■■■□□ 2.42
ERCC2-201ENST00000391941 HRCP23327 699 aa30.13■■■□□ 2.41
ERCC2-201ENST00000391941 PPARGC1BQ86YN6 1023 aaKnown RBP30.05■■■□□ 2.4
ERCC2-201ENST00000391941 CCDC180Q9P1Z9 1646 aa30.02■■■□□ 2.4
ERCC2-201ENST00000391941 LOC105371045A0A1W2PR82 267 aa29.76■■■□□ 2.35
ERCC2-201ENST00000391941 DCAF1Q9Y4B6 1507 aa29.2■■■□□ 2.26
ERCC2-201ENST00000391941 EHMT2Q96KQ7 1210 aa29.15■■■□□ 2.26
ERCC2-201ENST00000391941 FAM9AQ8IZU1 332 aaPredicted RBP29■■■□□ 2.23
ERCC2-201ENST00000391941 TRIM26Q12899 539 aaPredicted RBP28.98■■■□□ 2.23
ERCC2-201ENST00000391941 ABCC9O60706 1549 aa28.69■■■□□ 2.18
ERCC2-201ENST00000391941 TRIM41Q8WV44 630 aa28.69■■■□□ 2.18
ERCC2-201ENST00000391941 RSF1Q96T23 1441 aaPredicted RBP28.56■■■□□ 2.16
ERCC2-201ENST00000391941 SCRIBQ14160 1630 aa28.47■■■□□ 2.15
ERCC2-201ENST00000391941 SCAF1Q9H7N4 1312 aaKnown RBP28.37■■■□□ 2.13
ERCC2-201ENST00000391941 RB1CC1Q8TDY2 1594 aa28.36■■■□□ 2.13
ERCC2-201ENST00000391941 ZEB1P37275 1124 aaPredicted RBP28.3■■■□□ 2.12
ERCC2-201ENST00000391941 TTBK1Q5TCY1 1321 aaPredicted RBP28.26■■■□□ 2.11
ERCC2-201ENST00000391941 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.21■■■□□ 2.11
ERCC2-201ENST00000391941 CECR2Q9BXF3 1484 aa28.05■■■□□ 2.08
ERCC2-201ENST00000391941 CCER1Q8TC90 406 aaPredicted RBP27.97■■■□□ 2.07
ERCC2-201ENST00000391941 MROH2BQ7Z745 1585 aa27.91■■■□□ 2.06
ERCC2-201ENST00000391941 NEUROD1Q13562 356 aa27.84■■■□□ 2.05
ERCC2-201ENST00000391941 WIZO95785 1651 aa27.77■■■□□ 2.04
ERCC2-201ENST00000391941 NACADO15069 1562 aa27.73■■■□□ 2.03
ERCC2-201ENST00000391941 ACIN1Q9UKV3 1341 aaKnown RBP27.68■■■□□ 2.02
ERCC2-201ENST00000391941 PELP1Q8IZL8 1130 aaKnown RBP27.66■■■□□ 2.02
ERCC2-201ENST00000391941 DIEXFQ68CQ4 756 aaKnown RBP27.63■■■□□ 2.01
ERCC2-201ENST00000391941 GTF3C3Q9Y5Q9 886 aa27.61■■■□□ 2.01
ERCC2-201ENST00000391941 BAZ1AQ9NRL2 1556 aaPredicted RBP27.53■■■□□ 2
ERCC2-201ENST00000391941 ABCC8Q09428 1581 aa27.51■■■□□ 2
ERCC2-201ENST00000391941 EIF4G1Q04637 1599 aaKnown RBP27.5■■□□□ 1.99
ERCC2-201ENST00000391941 YTHDC1Q96MU7 727 aaKnown RBP27.48■■□□□ 1.99
ERCC2-201ENST00000391941 CCDC88BA6NC98 1476 aa27.45■■□□□ 1.99
ERCC2-201ENST00000391941 SOGA1O94964 1423 aa27.38■■□□□ 1.97
ERCC2-201ENST00000391941 UBTFP17480 764 aaKnown RBP27.37■■□□□ 1.97
ERCC2-201ENST00000391941 CEP162Q5TB80 1403 aa27.33■■□□□ 1.97
ERCC2-201ENST00000391941 RUSC2Q8N2Y8 1516 aa27.3■■□□□ 1.96
ERCC2-201ENST00000391941 WRNQ14191 1432 aaPredicted RBP eCLIP27.28■■□□□ 1.96
ERCC2-201ENST00000391941 CENPBP07199 599 aaPredicted RBP27.28■■□□□ 1.96
ERCC2-201ENST00000391941 HNRNPUL2Q1KMD3 747 aaKnown RBP27.27■■□□□ 1.96
ERCC2-201ENST00000391941 RANGAP1P46060 587 aaPredicted RBP27.26■■□□□ 1.95
ERCC2-201ENST00000391941 TOP2AP11388 1531 aaKnown RBP27.25■■□□□ 1.95
ERCC2-201ENST00000391941 SMARCA2P51531 1590 aa27.16■■□□□ 1.94
ERCC2-201ENST00000391941 TNIKQ9UKE5 1360 aa27.15■■□□□ 1.94
ERCC2-201ENST00000391941 ZNF316A6NFI3 1004 aaPredicted RBP27.14■■□□□ 1.93
ERCC2-201ENST00000391941 SMARCA4P51532 1647 aa27.13■■□□□ 1.93
ERCC2-201ENST00000391941 CSRNP3Q8WYN3 585 aa27.13■■□□□ 1.93
ERCC2-201ENST00000391941 MIER1Q8N108 512 aa27.11■■□□□ 1.93
ERCC2-201ENST00000391941 PABPN1Q86U42 306 aaKnown RBP eCLIP27.01■■□□□ 1.91
ERCC2-201ENST00000391941 EEA1Q15075 1411 aa26.98■■□□□ 1.91
ERCC2-201ENST00000391941 GOLGA3Q08378 1498 aa26.9■■□□□ 1.9
ERCC2-201ENST00000391941 UNC13AQ9UPW8 1703 aa26.82■■□□□ 1.88
ERCC2-201ENST00000391941 CLIP1P30622 1438 aa26.69■■□□□ 1.86
ERCC2-201ENST00000391941 CEP164Q9UPV0 1460 aa26.69■■□□□ 1.86
ERCC2-201ENST00000391941 APLP2Q06481 763 aa26.67■■□□□ 1.86
ERCC2-201ENST00000391941 SYNJ1O43426 1573 aa26.65■■□□□ 1.86
ERCC2-201ENST00000391941 KIF21BO75037 1637 aa26.59■■□□□ 1.85
ERCC2-201ENST00000391941 RAPGEF2Q9Y4G8 1499 aa26.58■■□□□ 1.85
ERCC2-201ENST00000391941 VPS8Q8N3P4 1428 aa26.58■■□□□ 1.85
ERCC2-201ENST00000391941 BICRAQ9NZM4 1560 aa26.52■■□□□ 1.84
ERCC2-201ENST00000391941 PEG3Q9GZU2 1588 aa26.5■■□□□ 1.83
ERCC2-201ENST00000391941 ITGAEP38570 1179 aa26.49■■□□□ 1.83
ERCC2-201ENST00000391941 KANK4Q5T7N3 995 aaPredicted RBP26.47■■□□□ 1.83
ERCC2-201ENST00000391941 BAZ1BQ9UIG0 1483 aaKnown RBP26.44■■□□□ 1.82
ERCC2-201ENST00000391941 KCNH8Q96L42 1107 aa26.38■■□□□ 1.81
ERCC2-201ENST00000391941 ATAD2BQ9ULI0 1458 aa26.38■■□□□ 1.81
ERCC2-201ENST00000391941 DHX57Q6P158 1386 aaKnown RBP26.34■■□□□ 1.81
ERCC2-201ENST00000391941 SUPT16HQ9Y5B9 1047 aaKnown RBP26.32■■□□□ 1.8
ERCC2-201ENST00000391941 MYT1Q01538 1121 aa26.25■■□□□ 1.79
ERCC2-201ENST00000391941 BCANQ96GW7 911 aa26.21■■□□□ 1.79
ERCC2-201ENST00000391941 TOP2BQ02880 1626 aa26.2■■□□□ 1.79
ERCC2-201ENST00000391941 CLSPNQ9HAW4 1339 aa26.19■■□□□ 1.78
ERCC2-201ENST00000391941 ARAP1Q96P48 1450 aa26.17■■□□□ 1.78
ERCC2-201ENST00000391941 PRXQ9BXM0 1461 aa26.13■■□□□ 1.77
ERCC2-201ENST00000391941 HIRIP3Q9BW71 556 aaPredicted RBP26.11■■□□□ 1.77
ERCC2-201ENST00000391941 ERICH3Q5RHP9 1530 aa26.08■■□□□ 1.77
ERCC2-201ENST00000391941 TSHZ2Q9NRE2 1034 aa26.05■■□□□ 1.76
ERCC2-201ENST00000391941 BIVM-ERCC5R4GMW8 1640 aa26.05■■□□□ 1.76
ERCC2-201ENST00000391941 RRBP1Q9P2E9 1410 aaKnown RBP26.01■■□□□ 1.75
ERCC2-201ENST00000391941 SIN3AQ96ST3 1273 aa26■■□□□ 1.75
ERCC2-201ENST00000391941 DDX10Q13206 875 aaKnown RBP25.98■■□□□ 1.75
ERCC2-201ENST00000391941 CCNB3Q8WWL7 1395 aa25.94■■□□□ 1.74
ERCC2-201ENST00000391941 ATP1B4Q9UN42 357 aaPredicted RBP25.93■■□□□ 1.74
ERCC2-201ENST00000391941 CUX1P39880 1505 aa25.93■■□□□ 1.74
ERCC2-201ENST00000391941 P3H3Q8IVL6 736 aa25.92■■□□□ 1.74
ERCC2-201ENST00000391941 KIF27Q86VH2 1401 aa25.91■■□□□ 1.74
ERCC2-201ENST00000391941 RAB3GAP2Q9H2M9 1393 aa25.9■■□□□ 1.74
ERCC2-201ENST00000391941 CUX2O14529 1486 aa25.88■■□□□ 1.73
ERCC2-201ENST00000391941 FAM50AQ14320 339 aaKnown RBP25.88■■□□□ 1.73
ERCC2-201ENST00000391941 ARHGAP35Q9NRY4 1499 aa25.88■■□□□ 1.73
ERCC2-201ENST00000391941 FKBP8Q14318 412 aa25.87■■□□□ 1.73
ERCC2-201ENST00000391941 TRIM52Q96A61 297 aa25.84■■□□□ 1.73
ERCC2-201ENST00000391941 MAPKBP1O60336 1514 aa25.76■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms