RNA–Protein interactions for RNA: ENST00000389463.8

LAMA4-205, Transcript of laminin subunit alpha 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LAMA4, Length 6,297 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LAMA4-205ENST00000389463 DCAF8L2P0C7V8 631 aa19.74■□□□□ 0.75
LAMA4-205ENST00000389463 NISCHQ9Y2I1 1504 aa18.97■□□□□ 0.63
LAMA4-205ENST00000389463 SUPT5HO00267 1087 aaKnown RBP18.33■□□□□ 0.52
LAMA4-205ENST00000389463 SHROOM4Q9ULL8 1493 aa18.16■□□□□ 0.5
LAMA4-205ENST00000389463 EHMT2Q96KQ7 1210 aa17.71■□□□□ 0.43
LAMA4-205ENST00000389463 FAM9AQ8IZU1 332 aaPredicted RBP17.56■□□□□ 0.4
LAMA4-205ENST00000389463 APLP2Q06481 763 aa17.51■□□□□ 0.39
LAMA4-205ENST00000389463 RANGAP1P46060 587 aaPredicted RBP17.11■□□□□ 0.33
LAMA4-205ENST00000389463 TRIM41Q8WV44 630 aa17.05■□□□□ 0.32
LAMA4-205ENST00000389463 ATP1B4Q9UN42 357 aaPredicted RBP17.05■□□□□ 0.32
LAMA4-205ENST00000389463 TTBK1Q5TCY1 1321 aaPredicted RBP17.05■□□□□ 0.32
LAMA4-205ENST00000389463 UBTFP17480 764 aaKnown RBP16.9■□□□□ 0.3
LAMA4-205ENST00000389463 PELP1Q8IZL8 1130 aaKnown RBP16.82■□□□□ 0.28
LAMA4-205ENST00000389463 PCGF6Q9BYE7 350 aa16.7■□□□□ 0.26
LAMA4-205ENST00000389463 ABCC9O60706 1549 aa16.69■□□□□ 0.26
LAMA4-205ENST00000389463 MYT1LQ9UL68 1186 aa16.57■□□□□ 0.24
LAMA4-205ENST00000389463 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.57■□□□□ 0.24
LAMA4-205ENST00000389463 HNRNPUL2Q1KMD3 747 aaKnown RBP16.57■□□□□ 0.24
LAMA4-205ENST00000389463 CCER1Q8TC90 406 aaPredicted RBP16.55■□□□□ 0.24
LAMA4-205ENST00000389463 PABPN1Q86U42 306 aaKnown RBP eCLIP16.54■□□□□ 0.24
LAMA4-205ENST00000389463 ERICH6Q7L0X2 663 aa16.47■□□□□ 0.23
LAMA4-205ENST00000389463 ZEB1P37275 1124 aaPredicted RBP16.43■□□□□ 0.22
LAMA4-205ENST00000389463 PPARGC1BQ86YN6 1023 aaKnown RBP16.33■□□□□ 0.21
LAMA4-205ENST00000389463 ITGAEP38570 1179 aa16.28■□□□□ 0.2
LAMA4-205ENST00000389463 MYT1Q01538 1121 aa16.24■□□□□ 0.19
LAMA4-205ENST00000389463 CENPBP07199 599 aaPredicted RBP16.19■□□□□ 0.18
LAMA4-205ENST00000389463 CHIC1Q5VXU3 224 aa16.16■□□□□ 0.18
LAMA4-205ENST00000389463 FBLN2P98095 1184 aa16.11■□□□□ 0.17
LAMA4-205ENST00000389463 POLR3GLQ9BT43 218 aa16.09■□□□□ 0.17
LAMA4-205ENST00000389463 TRIM26Q12899 539 aaPredicted RBP16.07■□□□□ 0.16
LAMA4-205ENST00000389463 LOC105371045A0A1W2PR82 267 aa16.06■□□□□ 0.16
LAMA4-205ENST00000389463 NEFLP07196 543 aa16.04■□□□□ 0.16
LAMA4-205ENST00000389463 FAM50AQ14320 339 aaKnown RBP15.95■□□□□ 0.14
LAMA4-205ENST00000389463 SLC4A1APQ9BWU0 796 aaKnown RBP15.94■□□□□ 0.14
LAMA4-205ENST00000389463 YTHDC1Q96MU7 727 aaKnown RBP15.94■□□□□ 0.14
LAMA4-205ENST00000389463 TRIM52Q96A61 297 aa15.87■□□□□ 0.13
LAMA4-205ENST00000389463 SCRIBQ14160 1630 aa15.86■□□□□ 0.13
LAMA4-205ENST00000389463 CNGB1Q14028 1251 aaPredicted RBP15.84■□□□□ 0.13
LAMA4-205ENST00000389463 P3H3Q8IVL6 736 aa15.72■□□□□ 0.11
LAMA4-205ENST00000389463 ARID3CA6NKF2 412 aa15.71■□□□□ 0.11
LAMA4-205ENST00000389463 CCDC180Q9P1Z9 1646 aa15.71■□□□□ 0.1
LAMA4-205ENST00000389463 BCANQ96GW7 911 aa15.66■□□□□ 0.1
LAMA4-205ENST00000389463 NPM1P06748 294 aaKnown RBP eCLIP15.65■□□□□ 0.1
LAMA4-205ENST00000389463 CDK11AQ9UQ88 783 aaPredicted RBP15.65■□□□□ 0.1
LAMA4-205ENST00000389463 NEUROD1Q13562 356 aa15.64■□□□□ 0.09
LAMA4-205ENST00000389463 ZCCHC6Q5VYS8 1495 aaKnown RBP15.64■□□□□ 0.09
LAMA4-205ENST00000389463 CSRNP3Q8WYN3 585 aa15.63■□□□□ 0.09
LAMA4-205ENST00000389463 ZNF326Q5BKZ1 582 aaKnown RBP15.62■□□□□ 0.09
LAMA4-205ENST00000389463 HRCP23327 699 aa15.62■□□□□ 0.09
LAMA4-205ENST00000389463 RB1CC1Q8TDY2 1594 aa15.61■□□□□ 0.09
LAMA4-205ENST00000389463 ESF1Q9H501 851 aaKnown RBP15.61■□□□□ 0.09
LAMA4-205ENST00000389463 ZNF777Q9ULD5 760 aaPredicted RBP15.61■□□□□ 0.09
LAMA4-205ENST00000389463 DAXXQ9UER7 740 aaPredicted RBP15.57■□□□□ 0.08
LAMA4-205ENST00000389463 CHMP7Q8WUX9 453 aaPredicted RBP15.45■□□□□ 0.06
LAMA4-205ENST00000389463 PLPPR3Q6T4P5 718 aa15.44■□□□□ 0.06
LAMA4-205ENST00000389463 STAG3Q9UJ98 1225 aa15.44■□□□□ 0.06
LAMA4-205ENST00000389463 CLSPNQ9HAW4 1339 aa15.39■□□□□ 0.05
LAMA4-205ENST00000389463 SLC24A1O60721 1099 aa15.39■□□□□ 0.05
LAMA4-205ENST00000389463 NACADO15069 1562 aa15.38■□□□□ 0.05
LAMA4-205ENST00000389463 CHGAP10645 457 aaKnown RBP15.38■□□□□ 0.05
LAMA4-205ENST00000389463 NEFMP07197 916 aa15.37■□□□□ 0.05
LAMA4-205ENST00000389463 DIEXFQ68CQ4 756 aaKnown RBP15.35■□□□□ 0.05
LAMA4-205ENST00000389463 ANP32CO43423 234 aa15.34■□□□□ 0.05
LAMA4-205ENST00000389463 ZBTB47Q9UFB7 747 aaPredicted RBP15.29■□□□□ 0.04
LAMA4-205ENST00000389463 BAZ1BQ9UIG0 1483 aaKnown RBP15.26■□□□□ 0.03
LAMA4-205ENST00000389463 ERCC6Q03468 1493 aa15.25■□□□□ 0.03
LAMA4-205ENST00000389463 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.25■□□□□ 0.03
LAMA4-205ENST00000389463 TSPY4P0CV99 314 aa15.24■□□□□ 0.03
LAMA4-205ENST00000389463 TSPY10P0CW01 314 aa15.24■□□□□ 0.03
LAMA4-205ENST00000389463 CANXP27824 592 aaKnown RBP15.2■□□□□ 0.02
LAMA4-205ENST00000389463 ZNF316A6NFI3 1004 aaPredicted RBP15.2■□□□□ 0.02
LAMA4-205ENST00000389463 CHIC2Q9UKJ5 165 aa15.19■□□□□ 0.02
LAMA4-205ENST00000389463 MTUS2Q5JR59 1369 aa15.19■□□□□ 0.02
LAMA4-205ENST00000389463 KCNH8Q96L42 1107 aa15.17■□□□□ 0.02
LAMA4-205ENST00000389463 TONSLQ96HA7 1378 aa15.16■□□□□ 0.02
LAMA4-205ENST00000389463 RTL5Q5HYW3 569 aaPredicted RBP15.15■□□□□ 0.02
LAMA4-205ENST00000389463 PLEKHD1A6NEE1 506 aa15.13■□□□□ 0.01
LAMA4-205ENST00000389463 RSF1Q96T23 1441 aaPredicted RBP15.1■□□□□ 0.01
LAMA4-205ENST00000389463 BCL11AQ9H165 835 aa15.09■□□□□ 0.01
LAMA4-205ENST00000389463 ARID4BQ4LE39 1312 aaPredicted RBP15.06■□□□□ 0
LAMA4-205ENST00000389463 WRNQ14191 1432 aaPredicted RBP eCLIP15.05■□□□□ -0
LAMA4-205ENST00000389463 CLIP1P30622 1438 aa15.05■□□□□ -0
LAMA4-205ENST00000389463 SCAF1Q9H7N4 1312 aaKnown RBP15.04■□□□□ -0
LAMA4-205ENST00000389463 PPP1R15AO75807 674 aaPredicted RBP15.03■□□□□ -0
LAMA4-205ENST00000389463 KIF27Q86VH2 1401 aa15.03■□□□□ -0
LAMA4-205ENST00000389463 BAZ1AQ9NRL2 1556 aaPredicted RBP15.02□□□□□ -0.01
LAMA4-205ENST00000389463 EEA1Q15075 1411 aa15.01□□□□□ -0.01
LAMA4-205ENST00000389463 KDM2AQ9Y2K7 1162 aa15.01□□□□□ -0.01
LAMA4-205ENST00000389463 GOLGA3Q08378 1498 aa14.98□□□□□ -0.01
LAMA4-205ENST00000389463 C14orf37Q86TY3 774 aa14.97□□□□□ -0.01
LAMA4-205ENST00000389463 DCAF1Q9Y4B6 1507 aa14.96□□□□□ -0.01
LAMA4-205ENST00000389463 RRP7BPQ9NSQ0 103 aa14.95□□□□□ -0.02
LAMA4-205ENST00000389463 TRHP20396 242 aaPredicted RBP14.94□□□□□ -0.02
LAMA4-205ENST00000389463 CFDP1Q9UEE9 299 aaPredicted RBP14.94□□□□□ -0.02
LAMA4-205ENST00000389463 SENP3Q9H4L4 574 aaPredicted RBP14.93□□□□□ -0.02
LAMA4-205ENST00000389463 A0A0G2JS52 829 aa14.89□□□□□ -0.03
LAMA4-205ENST00000389463 ZBTB7CA1YPR0 619 aa14.89□□□□□ -0.03
LAMA4-205ENST00000389463 ACIN1Q9UKV3 1341 aaKnown RBP14.88□□□□□ -0.03
LAMA4-205ENST00000389463 PLEKHG5O94827 1062 aa14.86□□□□□ -0.03
LAMA4-205ENST00000389463 CECR2Q9BXF3 1484 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms