RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 AEBP2Q6ZN18 517 aaPredicted RBP10.19□□□□□ -0.78
RNU6-540P-201ENST00000384622 POTEDQ86YR6 584 aa9.6□□□□□ -0.87
RNU6-540P-201ENST00000384622 CHIC1Q5VXU3 224 aa9.57□□□□□ -0.88
RNU6-540P-201ENST00000384622 SENP3Q9H4L4 574 aaPredicted RBP8.89□□□□□ -0.99
RNU6-540P-201ENST00000384622 PHF23Q9BUL5 403 aaPredicted RBP8.64□□□□□ -1.03
RNU6-540P-201ENST00000384622 FOXD1Q16676 465 aa8.38□□□□□ -1.07
RNU6-540P-201ENST00000384622 MSH5O43196 834 aa8.23□□□□□ -1.09
RNU6-540P-201ENST00000384622 CACNB1Q02641 598 aaPredicted RBP7.66□□□□□ -1.18
RNU6-540P-201ENST00000384622 PIAS4Q8N2W9 510 aaPredicted RBP7.65□□□□□ -1.18
RNU6-540P-201ENST00000384622 POTEHQ6S545 545 aa7.35□□□□□ -1.23
RNU6-540P-201ENST00000384622 PPP6R1Q9UPN7 881 aa7.12□□□□□ -1.27
RNU6-540P-201ENST00000384622 ADRA2BP18089 450 aa7.06□□□□□ -1.28
RNU6-540P-201ENST00000384622 RNF39Q9H2S5 420 aa6.91□□□□□ -1.3
RNU6-540P-201ENST00000384622 DMRT2Q9Y5R5 561 aa6.89□□□□□ -1.31
RNU6-540P-201ENST00000384622 C1QBPQ07021 282 aaKnown RBP6.78□□□□□ -1.32
RNU6-540P-201ENST00000384622 MAPK8IP2Q13387 824 aaPredicted RBP6.77□□□□□ -1.33
RNU6-540P-201ENST00000384622 DCAF8L1A6NGE4 600 aa6.75□□□□□ -1.33
RNU6-540P-201ENST00000384622 PLPPR3Q6T4P5 718 aa6.65□□□□□ -1.34
RNU6-540P-201ENST00000384622 PLSCR2Q9NRY7 297 aa6.52□□□□□ -1.37
RNU6-540P-201ENST00000384622 SCAF1Q9H7N4 1312 aaKnown RBP6.5□□□□□ -1.37
RNU6-540P-201ENST00000384622 SP7Q8TDD2 431 aaPredicted RBP6.46□□□□□ -1.38
RNU6-540P-201ENST00000384622 HOXD11P31277 338 aaPredicted RBP6.25□□□□□ -1.41
RNU6-540P-201ENST00000384622 DNAJC5BQ9UF47 199 aa6.21□□□□□ -1.42
RNU6-540P-201ENST00000384622 DSG3P32926 999 aa6.16□□□□□ -1.42
RNU6-540P-201ENST00000384622 CHRDL2Q6WN34 429 aa6.16□□□□□ -1.42
RNU6-540P-201ENST00000384622 LHX8Q68G74 356 aa6.06□□□□□ -1.44
RNU6-540P-201ENST00000384622 CAPN15O75808 1086 aa6.03□□□□□ -1.44
RNU6-540P-201ENST00000384622 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.03□□□□□ -1.44
RNU6-540P-201ENST00000384622 HAX1O00165 279 aa6.01□□□□□ -1.45
RNU6-540P-201ENST00000384622 RNF216Q9NWF9 866 aaPredicted RBP5.98□□□□□ -1.45
RNU6-540P-201ENST00000384622 SPINK5Q9NQ38 1064 aaPredicted RBP5.95□□□□□ -1.46
RNU6-540P-201ENST00000384622 RBM42Q9BTD8 480 aaKnown RBP5.93□□□□□ -1.46
RNU6-540P-201ENST00000384622 PIP4P2Q8N4L2 257 aa5.81□□□□□ -1.48
RNU6-540P-201ENST00000384622 CNKSR2Q8WXI2 1034 aa5.81□□□□□ -1.48
RNU6-540P-201ENST00000384622 ABCB7O75027 752 aa5.8□□□□□ -1.48
RNU6-540P-201ENST00000384622 EVX2Q03828 476 aa5.8□□□□□ -1.48
RNU6-540P-201ENST00000384622 POTEMA6NI47 508 aa5.76□□□□□ -1.49
RNU6-540P-201ENST00000384622 U3KPZ7 1027 aaPredicted RBP5.73□□□□□ -1.49
RNU6-540P-201ENST00000384622 PCDH10Q9P2E7 1040 aa5.72□□□□□ -1.49
RNU6-540P-201ENST00000384622 TRHP20396 242 aaPredicted RBP5.71□□□□□ -1.5
RNU6-540P-201ENST00000384622 POTEGQ6S5H5 508 aa5.7□□□□□ -1.5
RNU6-540P-201ENST00000384622 PPP4R3CPQ6ZMV5 832 aa5.7□□□□□ -1.5
RNU6-540P-201ENST00000384622 GABBR2O75899 941 aa5.64□□□□□ -1.51
RNU6-540P-201ENST00000384622 ZNF219Q9P2Y4 722 aaPredicted RBP5.63□□□□□ -1.51
RNU6-540P-201ENST00000384622 FXR2P51116 673 aaKnown RBP eCLIP5.61□□□□□ -1.51
RNU6-540P-201ENST00000384622 AKT1S1Q96B36 256 aa5.58□□□□□ -1.52
RNU6-540P-201ENST00000384622 REM2Q8IYK8 340 aaPredicted RBP5.54□□□□□ -1.52
RNU6-540P-201ENST00000384622 APLP2Q06481 763 aa5.53□□□□□ -1.52
RNU6-540P-201ENST00000384622 PITPNM1O00562 1244 aa5.48□□□□□ -1.53
RNU6-540P-201ENST00000384622 POTEIP0CG38 1075 aa5.47□□□□□ -1.53
RNU6-540P-201ENST00000384622 OTUD5Q96G74 571 aa5.47□□□□□ -1.53
RNU6-540P-201ENST00000384622 C19orf67A6NJJ6 358 aa5.46□□□□□ -1.54
RNU6-540P-201ENST00000384622 PRKAR2AP13861 404 aaKnown RBP5.36□□□□□ -1.55
RNU6-540P-201ENST00000384622 POLA2Q14181 598 aa5.34□□□□□ -1.55
RNU6-540P-201ENST00000384622 DCBLD2Q96PD2 775 aa5.34□□□□□ -1.55
RNU6-540P-201ENST00000384622 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.31□□□□□ -1.56
RNU6-540P-201ENST00000384622 HNRNPUL2Q1KMD3 747 aaKnown RBP5.31□□□□□ -1.56
RNU6-540P-201ENST00000384622 FAM163AQ96GL9 167 aaPredicted RBP5.3□□□□□ -1.56
RNU6-540P-201ENST00000384622 POTEB2H3BUK9 544 aa5.29□□□□□ -1.56
RNU6-540P-201ENST00000384622 CDAN1Q8IWY9 1227 aa5.29□□□□□ -1.56
RNU6-540P-201ENST00000384622 LCE2DQ5TA82 110 aaPredicted RBP5.26□□□□□ -1.57
RNU6-540P-201ENST00000384622 MMRN1Q13201 1228 aa5.25□□□□□ -1.57
RNU6-540P-201ENST00000384622 CLCN6P51797 869 aa5.24□□□□□ -1.57
RNU6-540P-201ENST00000384622 NCBP3Q53F19 620 aaKnown RBP5.22□□□□□ -1.57
RNU6-540P-201ENST00000384622 SAMD1Q6SPF0 538 aaPredicted RBP5.21□□□□□ -1.58
RNU6-540P-201ENST00000384622 OSCARQ8IYS5 282 aa5.18□□□□□ -1.58
RNU6-540P-201ENST00000384622 SPNS2Q8IVW8 549 aa5.15□□□□□ -1.59
RNU6-540P-201ENST00000384622 CLEC11AQ9Y240 323 aa5.14□□□□□ -1.59
RNU6-540P-201ENST00000384622 ZBTB12Q9Y330 459 aaPredicted RBP5.14□□□□□ -1.59
RNU6-540P-201ENST00000384622 CD44P16070 742 aaKnown RBP5.13□□□□□ -1.59
RNU6-540P-201ENST00000384622 NPM3O75607 178 aaKnown RBP5.11□□□□□ -1.59
RNU6-540P-201ENST00000384622 MAMSTRQ6ZN01 415 aa5.11□□□□□ -1.59
RNU6-540P-201ENST00000384622 SLC4A2P04920 1241 aa5.1□□□□□ -1.59
RNU6-540P-201ENST00000384622 CHADLQ6NUI6 762 aa5.09□□□□□ -1.59
RNU6-540P-201ENST00000384622 SPDYE1Q8NFV5 336 aaPredicted RBP5.05□□□□□ -1.6
RNU6-540P-201ENST00000384622 POTEJP0CG39 1038 aa5.04□□□□□ -1.6
RNU6-540P-201ENST00000384622 SCUBE2Q9NQ36 999 aa5.04□□□□□ -1.6
RNU6-540P-201ENST00000384622 GALR2O43603 387 aaPredicted RBP5□□□□□ -1.61
RNU6-540P-201ENST00000384622 PELP1Q8IZL8 1130 aaKnown RBP4.97□□□□□ -1.61
RNU6-540P-201ENST00000384622 METRNQ9UJH8 293 aa4.97□□□□□ -1.61
RNU6-540P-201ENST00000384622 ZNF579Q8NAF0 562 aaKnown RBP4.96□□□□□ -1.62
RNU6-540P-201ENST00000384622 C7P10643 843 aa4.93□□□□□ -1.62
RNU6-540P-201ENST00000384622 SLC39A7Q92504 469 aa4.92□□□□□ -1.62
RNU6-540P-201ENST00000384622 ZRANB1Q9UGI0 708 aa4.92□□□□□ -1.62
RNU6-540P-201ENST00000384622 FARP1Q9Y4F1 1045 aaPredicted RBP4.91□□□□□ -1.62
RNU6-540P-201ENST00000384622 ST18O60284 1047 aa4.9□□□□□ -1.63
RNU6-540P-201ENST00000384622 PRR29P0C7W0 189 aa4.9□□□□□ -1.63
RNU6-540P-201ENST00000384622 SPDYE2BA6NHP3 402 aa4.89□□□□□ -1.63
RNU6-540P-201ENST00000384622 SPDYE6P0CI01 402 aa4.89□□□□□ -1.63
RNU6-540P-201ENST00000384622 SPDYE2Q495Y8 402 aa4.89□□□□□ -1.63
RNU6-540P-201ENST00000384622 ASTLQ6HA08 431 aaPredicted RBP4.81□□□□□ -1.64
RNU6-540P-201ENST00000384622 ATMINO43313 823 aaPredicted RBP4.78□□□□□ -1.64
RNU6-540P-201ENST00000384622 TMEM121BQ9BXQ6 578 aaPredicted RBP4.77□□□□□ -1.65
RNU6-540P-201ENST00000384622 MYCNP04198 464 aaPredicted RBP4.76□□□□□ -1.65
RNU6-540P-201ENST00000384622 ATF5Q9Y2D1 282 aaPredicted RBP4.76□□□□□ -1.65
RNU6-540P-201ENST00000384622 MARVELD3Q96A59 401 aa4.74□□□□□ -1.65
RNU6-540P-201ENST00000384622 PHF12Q96QT6 1004 aa4.74□□□□□ -1.65
RNU6-540P-201ENST00000384622 SLAIN1Q8ND83 568 aa4.72□□□□□ -1.65
RNU6-540P-201ENST00000384622 ZNF692Q9BU19 519 aaPredicted RBP4.72□□□□□ -1.65
RNU6-540P-201ENST00000384622 KRTAP3-3Q9BYR6 98 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms