RNA–Protein interactions for RNA: ENST00000378244.6

DEPDC4-202, Transcript of DEP domain containing 4, humanhuman

TSL 2

Gene DEPDC4, Length 2,337 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-202ENST00000378244 NISCHQ9Y2I1 1504 aa27.89■■■□□ 2.06
DEPDC4-202ENST00000378244 CCDC180Q9P1Z9 1646 aa24.57■■□□□ 1.52
DEPDC4-202ENST00000378244 ABCC9O60706 1549 aa24.1■■□□□ 1.45
DEPDC4-202ENST00000378244 DCAF8L2P0C7V8 631 aa23.53■■□□□ 1.36
DEPDC4-202ENST00000378244 ZCCHC6Q5VYS8 1495 aaKnown RBP23.25■■□□□ 1.31
DEPDC4-202ENST00000378244 RB1CC1Q8TDY2 1594 aa23.11■■□□□ 1.29
DEPDC4-202ENST00000378244 NACADO15069 1562 aa23.11■■□□□ 1.29
DEPDC4-202ENST00000378244 DCAF1Q9Y4B6 1507 aa22.97■■□□□ 1.27
DEPDC4-202ENST00000378244 MYO15BQ96JP2 1530 aa22.97■■□□□ 1.27
DEPDC4-202ENST00000378244 PABPN1Q86U42 306 aaKnown RBP eCLIP22.64■■□□□ 1.22
DEPDC4-202ENST00000378244 SCRIBQ14160 1630 aa22.62■■□□□ 1.21
DEPDC4-202ENST00000378244 UNC13AQ9UPW8 1703 aa22.56■■□□□ 1.2
DEPDC4-202ENST00000378244 BICRAQ9NZM4 1560 aa22.42■■□□□ 1.18
DEPDC4-202ENST00000378244 SHROOM4Q9ULL8 1493 aa22.41■■□□□ 1.18
DEPDC4-202ENST00000378244 DNAJC5BQ9UF47 199 aa21.98■■□□□ 1.11
DEPDC4-202ENST00000378244 EIF4G1Q04637 1599 aaKnown RBP21.84■■□□□ 1.09
DEPDC4-202ENST00000378244 CECR2Q9BXF3 1484 aa21.8■■□□□ 1.08
DEPDC4-202ENST00000378244 CC2D2AQ9P2K1 1620 aa21.71■■□□□ 1.07
DEPDC4-202ENST00000378244 BAZ1AQ9NRL2 1556 aaPredicted RBP21.58■■□□□ 1.05
DEPDC4-202ENST00000378244 SMARCA4P51532 1647 aa21.57■■□□□ 1.04
DEPDC4-202ENST00000378244 MROH2BQ7Z745 1585 aa21.55■■□□□ 1.04
DEPDC4-202ENST00000378244 ATAD2BQ9ULI0 1458 aa21.45■■□□□ 1.02
DEPDC4-202ENST00000378244 RSF1Q96T23 1441 aaPredicted RBP21.38■■□□□ 1.01
DEPDC4-202ENST00000378244 SMARCA2P51531 1590 aa21.38■■□□□ 1.01
DEPDC4-202ENST00000378244 NCAPD3P42695 1498 aa21.37■■□□□ 1.01
DEPDC4-202ENST00000378244 WIZO95785 1651 aa21.32■■□□□ 1
DEPDC4-202ENST00000378244 BAZ1BQ9UIG0 1483 aaKnown RBP21.3■■□□□ 1
DEPDC4-202ENST00000378244 PEG3Q9GZU2 1588 aa21.3■■□□□ 1
DEPDC4-202ENST00000378244 HMGXB3Q12766 1538 aa21.23■□□□□ 0.99
DEPDC4-202ENST00000378244 SUPT5HO00267 1087 aaKnown RBP21.21■□□□□ 0.99
DEPDC4-202ENST00000378244 TOP2AP11388 1531 aaKnown RBP21.04■□□□□ 0.96
DEPDC4-202ENST00000378244 NESP48681 1621 aa20.91■□□□□ 0.94
DEPDC4-202ENST00000378244 CCDC88BA6NC98 1476 aa20.87■□□□□ 0.93
DEPDC4-202ENST00000378244 CADPSQ9ULU8 1353 aa20.81■□□□□ 0.92
DEPDC4-202ENST00000378244 LAMC3Q9Y6N6 1575 aa20.74■□□□□ 0.91
DEPDC4-202ENST00000378244 ERCC6Q03468 1493 aa20.73■□□□□ 0.91
DEPDC4-202ENST00000378244 CFTRP13569 1480 aa20.7■□□□□ 0.9
DEPDC4-202ENST00000378244 PDS5BQ9NTI5 1447 aa20.66■□□□□ 0.9
DEPDC4-202ENST00000378244 FANCD2Q9BXW9 1451 aa20.58■□□□□ 0.88
DEPDC4-202ENST00000378244 KIF21AQ7Z4S6 1674 aa20.56■□□□□ 0.88
DEPDC4-202ENST00000378244 CEP164Q9UPV0 1460 aa20.52■□□□□ 0.87
DEPDC4-202ENST00000378244 MRC2Q9UBG0 1479 aa20.42■□□□□ 0.86
DEPDC4-202ENST00000378244 PRDM2Q13029 1718 aa20.41■□□□□ 0.86
DEPDC4-202ENST00000378244 THOC2Q8NI27 1593 aaKnown RBP20.4■□□□□ 0.86
DEPDC4-202ENST00000378244 URB2Q14146 1524 aaKnown RBP20.35■□□□□ 0.85
DEPDC4-202ENST00000378244 CUX2O14529 1486 aa20.3■□□□□ 0.84
DEPDC4-202ENST00000378244 WDR62O43379 1518 aa20.3■□□□□ 0.84
DEPDC4-202ENST00000378244 TOPBP1Q92547 1522 aa20.25■□□□□ 0.83
DEPDC4-202ENST00000378244 ABCC8Q09428 1581 aa20.22■□□□□ 0.83
DEPDC4-202ENST00000378244 DNMBPQ6XZF7 1577 aa20.2■□□□□ 0.82
DEPDC4-202ENST00000378244 CUX1P39880 1505 aa20.18■□□□□ 0.82
DEPDC4-202ENST00000378244 WRNQ14191 1432 aaPredicted RBP eCLIP20.17■□□□□ 0.82
DEPDC4-202ENST00000378244 POLA1P09884 1462 aaPredicted RBP20.11■□□□□ 0.81
DEPDC4-202ENST00000378244 FGD5Q6ZNL6 1462 aa20.1■□□□□ 0.81
DEPDC4-202ENST00000378244 RAD54L2Q9Y4B4 1467 aa20.08■□□□□ 0.81
DEPDC4-202ENST00000378244 SYNJ1O43426 1573 aa20.08■□□□□ 0.8
DEPDC4-202ENST00000378244 SOGA1O94964 1423 aa20.06■□□□□ 0.8
DEPDC4-202ENST00000378244 IFT140Q96RY7 1462 aa20.04■□□□□ 0.8
DEPDC4-202ENST00000378244 ZNF608Q9ULD9 1512 aaPredicted RBP20.03■□□□□ 0.8
DEPDC4-202ENST00000378244 TOP2BQ02880 1626 aa20.02■□□□□ 0.79
DEPDC4-202ENST00000378244 TDRD9Q8NDG6 1382 aaKnown RBP19.99■□□□□ 0.79
DEPDC4-202ENST00000378244 BIVM-ERCC5R4GMW8 1640 aa19.97■□□□□ 0.79
DEPDC4-202ENST00000378244 TARBP1Q13395 1621 aaKnown RBP19.97■□□□□ 0.79
DEPDC4-202ENST00000378244 AQRO60306 1485 aaKnown RBP eCLIP19.97■□□□□ 0.79
DEPDC4-202ENST00000378244 TRIM41Q8WV44 630 aa19.94■□□□□ 0.78
DEPDC4-202ENST00000378244 EIF4G3O43432 1585 aaKnown RBP19.87■□□□□ 0.77
DEPDC4-202ENST00000378244 ABCA10Q8WWZ4 1543 aa19.86■□□□□ 0.77
DEPDC4-202ENST00000378244 CHIC1Q5VXU3 224 aa19.82■□□□□ 0.76
DEPDC4-202ENST00000378244 GAPVD1Q14C86 1478 aa19.81■□□□□ 0.76
DEPDC4-202ENST00000378244 FBLN2P98095 1184 aa19.8■□□□□ 0.76
DEPDC4-202ENST00000378244 WDR97A6NE52 1622 aa19.8■□□□□ 0.76
DEPDC4-202ENST00000378244 GRIN2BQ13224 1484 aa19.75■□□□□ 0.75
DEPDC4-202ENST00000378244 ABCA5Q8WWZ7 1642 aa19.73■□□□□ 0.75
DEPDC4-202ENST00000378244 SNAPC4Q5SXM2 1469 aa19.73■□□□□ 0.75
DEPDC4-202ENST00000378244 KIF27Q86VH2 1401 aa19.71■□□□□ 0.75
DEPDC4-202ENST00000378244 CHMP7Q8WUX9 453 aaPredicted RBP19.69■□□□□ 0.74
DEPDC4-202ENST00000378244 RUSC2Q8N2Y8 1516 aa19.68■□□□□ 0.74
DEPDC4-202ENST00000378244 PBRM1Q86U86 1689 aa19.67■□□□□ 0.74
DEPDC4-202ENST00000378244 OSCARQ8IYS5 282 aa19.65■□□□□ 0.74
DEPDC4-202ENST00000378244 MAGI1Q96QZ7 1491 aaPredicted RBP19.64■□□□□ 0.74
DEPDC4-202ENST00000378244 FAM9AQ8IZU1 332 aaPredicted RBP19.64■□□□□ 0.73
DEPDC4-202ENST00000378244 IGF1RP08069 1367 aa19.63■□□□□ 0.73
DEPDC4-202ENST00000378244 ERICH3Q5RHP9 1530 aa19.6■□□□□ 0.73
DEPDC4-202ENST00000378244 SYNJ2O15056 1496 aa19.6■□□□□ 0.73
DEPDC4-202ENST00000378244 CHD1O14646 1710 aa19.57■□□□□ 0.72
DEPDC4-202ENST00000378244 FHAD1B1AJZ9 1412 aa19.56■□□□□ 0.72
DEPDC4-202ENST00000378244 DNAJC5Q9H3Z4 198 aa19.56■□□□□ 0.72
DEPDC4-202ENST00000378244 ADAMTS12P58397 1594 aa19.55■□□□□ 0.72
DEPDC4-202ENST00000378244 CARMIL1Q5VZK9 1371 aa19.53■□□□□ 0.72
DEPDC4-202ENST00000378244 GRIN2AQ12879 1464 aa19.51■□□□□ 0.71
DEPDC4-202ENST00000378244 CSRNP3Q8WYN3 585 aa19.49■□□□□ 0.71
DEPDC4-202ENST00000378244 EHMT2Q96KQ7 1210 aa19.46■□□□□ 0.71
DEPDC4-202ENST00000378244 CUL7Q14999 1698 aa19.44■□□□□ 0.7
DEPDC4-202ENST00000378244 EEA1Q15075 1411 aa19.4■□□□□ 0.7
DEPDC4-202ENST00000378244 CEP170Q5SW79 1584 aa19.4■□□□□ 0.7
DEPDC4-202ENST00000378244 RAPGEF2Q9Y4G8 1499 aa19.39■□□□□ 0.69
DEPDC4-202ENST00000378244 NUP160Q12769 1436 aa19.38■□□□□ 0.69
DEPDC4-202ENST00000378244 PRXQ9BXM0 1461 aa19.36■□□□□ 0.69
DEPDC4-202ENST00000378244 CLASP1Q7Z460 1538 aa19.34■□□□□ 0.69
DEPDC4-202ENST00000378244 JPH4Q96JJ6 628 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 143 ms