RNA–Protein interactions for RNA: ENST00000377270.7

FXN-201, Transcript of frataxin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FXN, Length 2,608 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FXN-201ENST00000377270 NISCHQ9Y2I1 1504 aa31.68■■■□□ 2.66
FXN-201ENST00000377270 PELP1Q8IZL8 1130 aaKnown RBP27.13■■□□□ 1.93
FXN-201ENST00000377270 CCDC180Q9P1Z9 1646 aa27.07■■□□□ 1.92
FXN-201ENST00000377270 SHROOM4Q9ULL8 1493 aa26.76■■□□□ 1.87
FXN-201ENST00000377270 ZCCHC6Q5VYS8 1495 aaKnown RBP26.73■■□□□ 1.87
FXN-201ENST00000377270 MYT1Q01538 1121 aa26.53■■□□□ 1.84
FXN-201ENST00000377270 DCAF8L2P0C7V8 631 aa26.36■■□□□ 1.81
FXN-201ENST00000377270 SUPT5HO00267 1087 aaKnown RBP26.14■■□□□ 1.78
FXN-201ENST00000377270 DCAF1Q9Y4B6 1507 aa26.02■■□□□ 1.76
FXN-201ENST00000377270 HRCP23327 699 aa25.79■■□□□ 1.72
FXN-201ENST00000377270 MYO15BQ96JP2 1530 aa25.38■■□□□ 1.65
FXN-201ENST00000377270 TTBK1Q5TCY1 1321 aaPredicted RBP25.37■■□□□ 1.65
FXN-201ENST00000377270 ABCC9O60706 1549 aa25.3■■□□□ 1.64
FXN-201ENST00000377270 CHIC1Q5VXU3 224 aa25.29■■□□□ 1.64
FXN-201ENST00000377270 SCRIBQ14160 1630 aa25.29■■□□□ 1.64
FXN-201ENST00000377270 SCAF1Q9H7N4 1312 aaKnown RBP25.28■■□□□ 1.64
FXN-201ENST00000377270 PPARGC1BQ86YN6 1023 aaKnown RBP25.22■■□□□ 1.63
FXN-201ENST00000377270 NACADO15069 1562 aa25.12■■□□□ 1.61
FXN-201ENST00000377270 PRKCSHP14314 528 aaPredicted RBP24.98■■□□□ 1.59
FXN-201ENST00000377270 RSF1Q96T23 1441 aaPredicted RBP24.95■■□□□ 1.59
FXN-201ENST00000377270 PCGF6Q9BYE7 350 aa24.8■■□□□ 1.56
FXN-201ENST00000377270 RB1CC1Q8TDY2 1594 aa24.76■■□□□ 1.55
FXN-201ENST00000377270 CECR2Q9BXF3 1484 aa24.7■■□□□ 1.55
FXN-201ENST00000377270 BCL11AQ9H165 835 aa24.69■■□□□ 1.54
FXN-201ENST00000377270 MROH2BQ7Z745 1585 aa24.59■■□□□ 1.53
FXN-201ENST00000377270 LOC105371045A0A1W2PR82 267 aa24.51■■□□□ 1.51
FXN-201ENST00000377270 FAM9AQ8IZU1 332 aaPredicted RBP24.46■■□□□ 1.51
FXN-201ENST00000377270 WIZO95785 1651 aa24.44■■□□□ 1.5
FXN-201ENST00000377270 TRIM41Q8WV44 630 aa24.41■■□□□ 1.5
FXN-201ENST00000377270 BAZ1AQ9NRL2 1556 aaPredicted RBP24.36■■□□□ 1.49
FXN-201ENST00000377270 UNC13AQ9UPW8 1703 aa24.32■■□□□ 1.48
FXN-201ENST00000377270 ERICH6Q7L0X2 663 aa24.27■■□□□ 1.48
FXN-201ENST00000377270 APLP2Q06481 763 aa24.18■■□□□ 1.46
FXN-201ENST00000377270 SMARCA4P51532 1647 aa24.17■■□□□ 1.46
FXN-201ENST00000377270 ACIN1Q9UKV3 1341 aaKnown RBP24.15■■□□□ 1.46
FXN-201ENST00000377270 PABPN1Q86U42 306 aaKnown RBP eCLIP24.14■■□□□ 1.46
FXN-201ENST00000377270 CENPBP07199 599 aaPredicted RBP24.11■■□□□ 1.45
FXN-201ENST00000377270 TOP2AP11388 1531 aaKnown RBP24.08■■□□□ 1.44
FXN-201ENST00000377270 BICRAQ9NZM4 1560 aa24.06■■□□□ 1.44
FXN-201ENST00000377270 GTF3C3Q9Y5Q9 886 aa24.05■■□□□ 1.44
FXN-201ENST00000377270 TRIM26Q12899 539 aaPredicted RBP24.03■■□□□ 1.44
FXN-201ENST00000377270 NEUROD1Q13562 356 aa24.02■■□□□ 1.44
FXN-201ENST00000377270 ZEB1P37275 1124 aaPredicted RBP23.98■■□□□ 1.43
FXN-201ENST00000377270 CCDC88BA6NC98 1476 aa23.97■■□□□ 1.43
FXN-201ENST00000377270 EIF4G1Q04637 1599 aaKnown RBP23.97■■□□□ 1.43
FXN-201ENST00000377270 EHMT2Q96KQ7 1210 aa23.93■■□□□ 1.42
FXN-201ENST00000377270 SMARCA2P51531 1590 aa23.93■■□□□ 1.42
FXN-201ENST00000377270 ABCC8Q09428 1581 aa23.78■■□□□ 1.4
FXN-201ENST00000377270 PEG3Q9GZU2 1588 aa23.74■■□□□ 1.39
FXN-201ENST00000377270 ANP32EQ9BTT0 268 aa23.64■■□□□ 1.37
FXN-201ENST00000377270 ATAD2BQ9ULI0 1458 aa23.63■■□□□ 1.37
FXN-201ENST00000377270 BAZ1BQ9UIG0 1483 aaKnown RBP23.56■■□□□ 1.36
FXN-201ENST00000377270 SOGA1O94964 1423 aa23.52■■□□□ 1.36
FXN-201ENST00000377270 CSRNP3Q8WYN3 585 aa23.46■■□□□ 1.35
FXN-201ENST00000377270 WRNQ14191 1432 aaPredicted RBP eCLIP23.46■■□□□ 1.35
FXN-201ENST00000377270 SLC24A1O60721 1099 aa23.42■■□□□ 1.34
FXN-201ENST00000377270 RUSC2Q8N2Y8 1516 aa23.41■■□□□ 1.34
FXN-201ENST00000377270 EEA1Q15075 1411 aa23.4■■□□□ 1.34
FXN-201ENST00000377270 SYNJ1O43426 1573 aa23.32■■□□□ 1.32
FXN-201ENST00000377270 TNIKQ9UKE5 1360 aa23.3■■□□□ 1.32
FXN-201ENST00000377270 UBTFP17480 764 aaKnown RBP23.29■■□□□ 1.32
FXN-201ENST00000377270 CEP162Q5TB80 1403 aa23.29■■□□□ 1.32
FXN-201ENST00000377270 NCAPD3P42695 1498 aa23.24■■□□□ 1.31
FXN-201ENST00000377270 GOLGA3Q08378 1498 aa23.21■■□□□ 1.31
FXN-201ENST00000377270 HMGXB3Q12766 1538 aa23.2■■□□□ 1.3
FXN-201ENST00000377270 CEP164Q9UPV0 1460 aa23.11■■□□□ 1.29
FXN-201ENST00000377270 TOP2BQ02880 1626 aa23.08■■□□□ 1.29
FXN-201ENST00000377270 DIEXFQ68CQ4 756 aaKnown RBP23.06■■□□□ 1.28
FXN-201ENST00000377270 KIF21BO75037 1637 aa23.06■■□□□ 1.28
FXN-201ENST00000377270 ANO8Q9HCE9 1232 aaPredicted RBP23.01■■□□□ 1.27
FXN-201ENST00000377270 BIVM-ERCC5R4GMW8 1640 aa23■■□□□ 1.27
FXN-201ENST00000377270 CFTRP13569 1480 aa22.97■■□□□ 1.27
FXN-201ENST00000377270 RAPGEF2Q9Y4G8 1499 aa22.96■■□□□ 1.27
FXN-201ENST00000377270 CLIP1P30622 1438 aa22.93■■□□□ 1.26
FXN-201ENST00000377270 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.92■■□□□ 1.26
FXN-201ENST00000377270 CUX1P39880 1505 aa22.92■■□□□ 1.26
FXN-201ENST00000377270 CCER1Q8TC90 406 aaPredicted RBP22.89■■□□□ 1.25
FXN-201ENST00000377270 RANGAP1P46060 587 aaPredicted RBP22.87■■□□□ 1.25
FXN-201ENST00000377270 TSHZ2Q9NRE2 1034 aa22.84■■□□□ 1.25
FXN-201ENST00000377270 EIF5BO60841 1220 aaKnown RBP22.84■■□□□ 1.25
FXN-201ENST00000377270 VPS8Q8N3P4 1428 aa22.79■■□□□ 1.24
FXN-201ENST00000377270 PRXQ9BXM0 1461 aa22.79■■□□□ 1.24
FXN-201ENST00000377270 KIF27Q86VH2 1401 aa22.78■■□□□ 1.24
FXN-201ENST00000377270 CADPSQ9ULU8 1353 aa22.78■■□□□ 1.24
FXN-201ENST00000377270 CC2D2AQ9P2K1 1620 aa22.78■■□□□ 1.24
FXN-201ENST00000377270 ERICH3Q5RHP9 1530 aa22.75■■□□□ 1.23
FXN-201ENST00000377270 UBE2Q2Q8WVN8 375 aa22.75■■□□□ 1.23
FXN-201ENST00000377270 YTHDC1Q96MU7 727 aaKnown RBP22.75■■□□□ 1.23
FXN-201ENST00000377270 PRDM2Q13029 1718 aa22.73■■□□□ 1.23
FXN-201ENST00000377270 DAXXQ9UER7 740 aaPredicted RBP22.7■■□□□ 1.22
FXN-201ENST00000377270 CUX2O14529 1486 aa22.6■■□□□ 1.21
FXN-201ENST00000377270 HNRNPUL2Q1KMD3 747 aaKnown RBP22.58■■□□□ 1.21
FXN-201ENST00000377270 ZNF316A6NFI3 1004 aaPredicted RBP22.58■■□□□ 1.2
FXN-201ENST00000377270 ARAP1Q96P48 1450 aa22.57■■□□□ 1.2
FXN-201ENST00000377270 FGD5Q6ZNL6 1462 aa22.56■■□□□ 1.2
FXN-201ENST00000377270 IGF1RP08069 1367 aa22.56■■□□□ 1.2
FXN-201ENST00000377270 FANCD2Q9BXW9 1451 aa22.54■■□□□ 1.2
FXN-201ENST00000377270 SALL2Q9Y467 1007 aaPredicted RBP22.54■■□□□ 1.2
FXN-201ENST00000377270 SUPT16HQ9Y5B9 1047 aaKnown RBP22.51■■□□□ 1.19
FXN-201ENST00000377270 PLEKHG5O94827 1062 aa22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms