RNA–Protein interactions for RNA: ENST00000376806.9

HLA-A-202, Transcript of major histocompatibility complex, class I, A, humanhuman

BASIC

Gene HLA-A, Length 1,854 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-A-202ENST00000376806 NISCHQ9Y2I1 1504 aa37.4■■■■□ 3.58
HLA-A-202ENST00000376806 CCDC180Q9P1Z9 1646 aa32.54■■■□□ 2.8
HLA-A-202ENST00000376806 ZCCHC6Q5VYS8 1495 aaKnown RBP31.52■■■□□ 2.64
HLA-A-202ENST00000376806 ABCC9O60706 1549 aa31.16■■■□□ 2.58
HLA-A-202ENST00000376806 DCAF1Q9Y4B6 1507 aa30.92■■■□□ 2.54
HLA-A-202ENST00000376806 SHROOM4Q9ULL8 1493 aa30.77■■■□□ 2.52
HLA-A-202ENST00000376806 DCAF8L2P0C7V8 631 aa30.66■■■□□ 2.5
HLA-A-202ENST00000376806 MYO15BQ96JP2 1530 aa30.39■■■□□ 2.46
HLA-A-202ENST00000376806 NACADO15069 1562 aa30.21■■■□□ 2.43
HLA-A-202ENST00000376806 RB1CC1Q8TDY2 1594 aa30.09■■■□□ 2.41
HLA-A-202ENST00000376806 SCRIBQ14160 1630 aa29.97■■■□□ 2.39
HLA-A-202ENST00000376806 SUPT5HO00267 1087 aaKnown RBP29.72■■■□□ 2.35
HLA-A-202ENST00000376806 UNC13AQ9UPW8 1703 aa29.49■■■□□ 2.31
HLA-A-202ENST00000376806 PABPN1Q86U42 306 aaKnown RBP eCLIP29.31■■■□□ 2.28
HLA-A-202ENST00000376806 BICRAQ9NZM4 1560 aa29.27■■■□□ 2.28
HLA-A-202ENST00000376806 RSF1Q96T23 1441 aaPredicted RBP29.13■■■□□ 2.25
HLA-A-202ENST00000376806 CECR2Q9BXF3 1484 aa29.04■■■□□ 2.24
HLA-A-202ENST00000376806 MROH2BQ7Z745 1585 aa28.93■■■□□ 2.22
HLA-A-202ENST00000376806 BAZ1AQ9NRL2 1556 aaPredicted RBP28.87■■■□□ 2.21
HLA-A-202ENST00000376806 WIZO95785 1651 aa28.78■■■□□ 2.2
HLA-A-202ENST00000376806 SMARCA4P51532 1647 aa28.74■■■□□ 2.19
HLA-A-202ENST00000376806 CHIC1Q5VXU3 224 aa28.63■■■□□ 2.17
HLA-A-202ENST00000376806 TOP2AP11388 1531 aaKnown RBP28.44■■■□□ 2.14
HLA-A-202ENST00000376806 EIF4G1Q04637 1599 aaKnown RBP28.41■■■□□ 2.14
HLA-A-202ENST00000376806 PEG3Q9GZU2 1588 aa28.34■■■□□ 2.13
HLA-A-202ENST00000376806 SMARCA2P51531 1590 aa28.21■■■□□ 2.11
HLA-A-202ENST00000376806 CC2D2AQ9P2K1 1620 aa28.15■■■□□ 2.1
HLA-A-202ENST00000376806 DNAJC5BQ9UF47 199 aa28.15■■■□□ 2.1
HLA-A-202ENST00000376806 CCDC88BA6NC98 1476 aa28.11■■■□□ 2.09
HLA-A-202ENST00000376806 ATAD2BQ9ULI0 1458 aa28.1■■■□□ 2.09
HLA-A-202ENST00000376806 BAZ1BQ9UIG0 1483 aaKnown RBP27.98■■■□□ 2.07
HLA-A-202ENST00000376806 NCAPD3P42695 1498 aa27.92■■■□□ 2.06
HLA-A-202ENST00000376806 TRIM41Q8WV44 630 aa27.89■■■□□ 2.05
HLA-A-202ENST00000376806 HMGXB3Q12766 1538 aa27.84■■■□□ 2.05
HLA-A-202ENST00000376806 ABCC8Q09428 1581 aa27.72■■■□□ 2.03
HLA-A-202ENST00000376806 LOC105371045A0A1W2PR82 267 aa27.55■■■□□ 2
HLA-A-202ENST00000376806 FAM9AQ8IZU1 332 aaPredicted RBP27.42■■□□□ 1.98
HLA-A-202ENST00000376806 WRNQ14191 1432 aaPredicted RBP eCLIP27.41■■□□□ 1.98
HLA-A-202ENST00000376806 SYNJ1O43426 1573 aa27.38■■□□□ 1.97
HLA-A-202ENST00000376806 PRDM2Q13029 1718 aa27.35■■□□□ 1.97
HLA-A-202ENST00000376806 CFTRP13569 1480 aa27.27■■□□□ 1.96
HLA-A-202ENST00000376806 BIVM-ERCC5R4GMW8 1640 aa27.22■■□□□ 1.95
HLA-A-202ENST00000376806 TOP2BQ02880 1626 aa27.22■■□□□ 1.95
HLA-A-202ENST00000376806 SOGA1O94964 1423 aa27.2■■□□□ 1.94
HLA-A-202ENST00000376806 EEA1Q15075 1411 aa27.2■■□□□ 1.94
HLA-A-202ENST00000376806 NESP48681 1621 aa27.18■■□□□ 1.94
HLA-A-202ENST00000376806 CADPSQ9ULU8 1353 aa27.17■■□□□ 1.94
HLA-A-202ENST00000376806 RUSC2Q8N2Y8 1516 aa27.1■■□□□ 1.93
HLA-A-202ENST00000376806 EHMT2Q96KQ7 1210 aa27.05■■□□□ 1.92
HLA-A-202ENST00000376806 CUX1P39880 1505 aa27.04■■□□□ 1.92
HLA-A-202ENST00000376806 LAMC3Q9Y6N6 1575 aa27.03■■□□□ 1.92
HLA-A-202ENST00000376806 CSRNP3Q8WYN3 585 aa26.95■■□□□ 1.9
HLA-A-202ENST00000376806 KIF21BO75037 1637 aa26.92■■□□□ 1.9
HLA-A-202ENST00000376806 GOLGA3Q08378 1498 aa26.88■■□□□ 1.89
HLA-A-202ENST00000376806 FANCD2Q9BXW9 1451 aa26.86■■□□□ 1.89
HLA-A-202ENST00000376806 PDS5BQ9NTI5 1447 aa26.86■■□□□ 1.89
HLA-A-202ENST00000376806 CEP164Q9UPV0 1460 aa26.83■■□□□ 1.89
HLA-A-202ENST00000376806 TNIKQ9UKE5 1360 aa26.81■■□□□ 1.88
HLA-A-202ENST00000376806 KIF21AQ7Z4S6 1674 aa26.79■■□□□ 1.88
HLA-A-202ENST00000376806 CEP162Q5TB80 1403 aa26.75■■□□□ 1.87
HLA-A-202ENST00000376806 ERCC6Q03468 1493 aa26.73■■□□□ 1.87
HLA-A-202ENST00000376806 DNMBPQ6XZF7 1577 aa26.7■■□□□ 1.86
HLA-A-202ENST00000376806 PCGF6Q9BYE7 350 aa26.68■■□□□ 1.86
HLA-A-202ENST00000376806 FGD5Q6ZNL6 1462 aa26.67■■□□□ 1.86
HLA-A-202ENST00000376806 KIF27Q86VH2 1401 aa26.67■■□□□ 1.86
HLA-A-202ENST00000376806 UBTFP17480 764 aaKnown RBP26.65■■□□□ 1.86
HLA-A-202ENST00000376806 RAPGEF2Q9Y4G8 1499 aa26.64■■□□□ 1.86
HLA-A-202ENST00000376806 ERICH3Q5RHP9 1530 aa26.64■■□□□ 1.86
HLA-A-202ENST00000376806 PRXQ9BXM0 1461 aa26.6■■□□□ 1.85
HLA-A-202ENST00000376806 URB2Q14146 1524 aaKnown RBP26.59■■□□□ 1.85
HLA-A-202ENST00000376806 TOPBP1Q92547 1522 aa26.59■■□□□ 1.85
HLA-A-202ENST00000376806 TRIM26Q12899 539 aaPredicted RBP26.57■■□□□ 1.84
HLA-A-202ENST00000376806 MRC2Q9UBG0 1479 aa26.56■■□□□ 1.84
HLA-A-202ENST00000376806 CUX2O14529 1486 aa26.55■■□□□ 1.84
HLA-A-202ENST00000376806 THOC2Q8NI27 1593 aaKnown RBP26.52■■□□□ 1.84
HLA-A-202ENST00000376806 POLA1P09884 1462 aaPredicted RBP26.49■■□□□ 1.83
HLA-A-202ENST00000376806 WDR62O43379 1518 aa26.45■■□□□ 1.82
HLA-A-202ENST00000376806 WDR97A6NE52 1622 aa26.44■■□□□ 1.82
HLA-A-202ENST00000376806 CLIP1P30622 1438 aa26.44■■□□□ 1.82
HLA-A-202ENST00000376806 ABCA10Q8WWZ4 1543 aa26.43■■□□□ 1.82
HLA-A-202ENST00000376806 RAD54L2Q9Y4B4 1467 aa26.4■■□□□ 1.82
HLA-A-202ENST00000376806 IGF1RP08069 1367 aa26.36■■□□□ 1.81
HLA-A-202ENST00000376806 VPS8Q8N3P4 1428 aa26.27■■□□□ 1.8
HLA-A-202ENST00000376806 CUL7Q14999 1698 aa26.27■■□□□ 1.8
HLA-A-202ENST00000376806 ABCA5Q8WWZ7 1642 aa26.26■■□□□ 1.79
HLA-A-202ENST00000376806 PPARGC1BQ86YN6 1023 aaKnown RBP26.25■■□□□ 1.79
HLA-A-202ENST00000376806 CARMIL1Q5VZK9 1371 aa26.25■■□□□ 1.79
HLA-A-202ENST00000376806 HRCP23327 699 aa26.22■■□□□ 1.79
HLA-A-202ENST00000376806 TARBP1Q13395 1621 aaKnown RBP26.21■■□□□ 1.79
HLA-A-202ENST00000376806 ARAP1Q96P48 1450 aa26.19■■□□□ 1.78
HLA-A-202ENST00000376806 RANGAP1P46060 587 aaPredicted RBP26.14■■□□□ 1.78
HLA-A-202ENST00000376806 IFT140Q96RY7 1462 aa26.13■■□□□ 1.77
HLA-A-202ENST00000376806 GAPVD1Q14C86 1478 aa26.1■■□□□ 1.77
HLA-A-202ENST00000376806 CTTNBP2Q8WZ74 1663 aa26.1■■□□□ 1.77
HLA-A-202ENST00000376806 ARHGAP35Q9NRY4 1499 aa26.09■■□□□ 1.77
HLA-A-202ENST00000376806 ZNF608Q9ULD9 1512 aaPredicted RBP26.08■■□□□ 1.77
HLA-A-202ENST00000376806 TDRD9Q8NDG6 1382 aaKnown RBP26.08■■□□□ 1.77
HLA-A-202ENST00000376806 PBRM1Q86U86 1689 aa26.08■■□□□ 1.77
HLA-A-202ENST00000376806 AQRO60306 1485 aaKnown RBP eCLIP26.02■■□□□ 1.76
HLA-A-202ENST00000376806 TTBK1Q5TCY1 1321 aaPredicted RBP26■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms