RNA–Protein interactions for RNA: ENST00000376496.4

CLCN6-206, Transcript of chloride voltage-gated channel 6, humanhuman

TSL 5 BASIC

Gene CLCN6, Length 2,922 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN6-206ENST00000376496 NISCHQ9Y2I1 1504 aa28.13■■■□□ 2.09
CLCN6-206ENST00000376496 CCDC180Q9P1Z9 1646 aa24.3■■□□□ 1.48
CLCN6-206ENST00000376496 ZCCHC6Q5VYS8 1495 aaKnown RBP23.62■■□□□ 1.37
CLCN6-206ENST00000376496 DCAF8L2P0C7V8 631 aa23.58■■□□□ 1.36
CLCN6-206ENST00000376496 SHROOM4Q9ULL8 1493 aa23.43■■□□□ 1.34
CLCN6-206ENST00000376496 ABCC9O60706 1549 aa23.23■■□□□ 1.31
CLCN6-206ENST00000376496 DCAF1Q9Y4B6 1507 aa23.06■■□□□ 1.28
CLCN6-206ENST00000376496 MYO15BQ96JP2 1530 aa22.68■■□□□ 1.22
CLCN6-206ENST00000376496 SCRIBQ14160 1630 aa22.66■■□□□ 1.22
CLCN6-206ENST00000376496 NACADO15069 1562 aa22.64■■□□□ 1.22
CLCN6-206ENST00000376496 SUPT5HO00267 1087 aaKnown RBP22.57■■□□□ 1.2
CLCN6-206ENST00000376496 RB1CC1Q8TDY2 1594 aa22.47■■□□□ 1.19
CLCN6-206ENST00000376496 UNC13AQ9UPW8 1703 aa22.13■■□□□ 1.13
CLCN6-206ENST00000376496 PABPN1Q86U42 306 aaKnown RBP eCLIP22.04■■□□□ 1.12
CLCN6-206ENST00000376496 CECR2Q9BXF3 1484 aa22.02■■□□□ 1.11
CLCN6-206ENST00000376496 RSF1Q96T23 1441 aaPredicted RBP21.94■■□□□ 1.1
CLCN6-206ENST00000376496 BICRAQ9NZM4 1560 aa21.89■■□□□ 1.09
CLCN6-206ENST00000376496 MROH2BQ7Z745 1585 aa21.85■■□□□ 1.09
CLCN6-206ENST00000376496 WIZO95785 1651 aa21.69■■□□□ 1.06
CLCN6-206ENST00000376496 BAZ1AQ9NRL2 1556 aaPredicted RBP21.66■■□□□ 1.06
CLCN6-206ENST00000376496 SMARCA4P51532 1647 aa21.6■■□□□ 1.05
CLCN6-206ENST00000376496 CHIC1Q5VXU3 224 aa21.53■■□□□ 1.04
CLCN6-206ENST00000376496 TOP2AP11388 1531 aaKnown RBP21.32■■□□□ 1
CLCN6-206ENST00000376496 ATAD2BQ9ULI0 1458 aa21.24■□□□□ 0.99
CLCN6-206ENST00000376496 CCDC88BA6NC98 1476 aa21.21■□□□□ 0.99
CLCN6-206ENST00000376496 EIF4G1Q04637 1599 aaKnown RBP21.21■□□□□ 0.99
CLCN6-206ENST00000376496 PEG3Q9GZU2 1588 aa21.2■□□□□ 0.98
CLCN6-206ENST00000376496 SMARCA2P51531 1590 aa21.19■□□□□ 0.98
CLCN6-206ENST00000376496 BAZ1BQ9UIG0 1483 aaKnown RBP21.13■□□□□ 0.97
CLCN6-206ENST00000376496 TRIM41Q8WV44 630 aa21.06■□□□□ 0.96
CLCN6-206ENST00000376496 NCAPD3P42695 1498 aa20.95■□□□□ 0.94
CLCN6-206ENST00000376496 ABCC8Q09428 1581 aa20.92■□□□□ 0.94
CLCN6-206ENST00000376496 FAM9AQ8IZU1 332 aaPredicted RBP20.91■□□□□ 0.94
CLCN6-206ENST00000376496 CC2D2AQ9P2K1 1620 aa20.9■□□□□ 0.94
CLCN6-206ENST00000376496 LOC105371045A0A1W2PR82 267 aa20.88■□□□□ 0.93
CLCN6-206ENST00000376496 HMGXB3Q12766 1538 aa20.88■□□□□ 0.93
CLCN6-206ENST00000376496 EHMT2Q96KQ7 1210 aa20.77■□□□□ 0.92
CLCN6-206ENST00000376496 DNAJC5BQ9UF47 199 aa20.65■□□□□ 0.9
CLCN6-206ENST00000376496 WRNQ14191 1432 aaPredicted RBP eCLIP20.64■□□□□ 0.895e-6■■■■■ 46
CLCN6-206ENST00000376496 SYNJ1O43426 1573 aa20.59■□□□□ 0.89
CLCN6-206ENST00000376496 CFTRP13569 1480 aa20.56■□□□□ 0.88
CLCN6-206ENST00000376496 SOGA1O94964 1423 aa20.55■□□□□ 0.88
CLCN6-206ENST00000376496 RUSC2Q8N2Y8 1516 aa20.51■□□□□ 0.87
CLCN6-206ENST00000376496 CADPSQ9ULU8 1353 aa20.5■□□□□ 0.87
CLCN6-206ENST00000376496 NESP48681 1621 aa20.45■□□□□ 0.86
CLCN6-206ENST00000376496 CUX1P39880 1505 aa20.39■□□□□ 0.85
CLCN6-206ENST00000376496 TOP2BQ02880 1626 aa20.38■□□□□ 0.85
CLCN6-206ENST00000376496 PRDM2Q13029 1718 aa20.36■□□□□ 0.85
CLCN6-206ENST00000376496 CSRNP3Q8WYN3 585 aa20.33■□□□□ 0.85
CLCN6-206ENST00000376496 BIVM-ERCC5R4GMW8 1640 aa20.32■□□□□ 0.84
CLCN6-206ENST00000376496 FANCD2Q9BXW9 1451 aa20.31■□□□□ 0.84
CLCN6-206ENST00000376496 EEA1Q15075 1411 aa20.24■□□□□ 0.83
CLCN6-206ENST00000376496 UBTFP17480 764 aaKnown RBP20.2■□□□□ 0.82
CLCN6-206ENST00000376496 LAMC3Q9Y6N6 1575 aa20.19■□□□□ 0.82
CLCN6-206ENST00000376496 FGD5Q6ZNL6 1462 aa20.15■□□□□ 0.82
CLCN6-206ENST00000376496 CEP164Q9UPV0 1460 aa20.13■□□□□ 0.81
CLCN6-206ENST00000376496 GOLGA3Q08378 1498 aa20.1■□□□□ 0.81
CLCN6-206ENST00000376496 KIF21AQ7Z4S6 1674 aa20.09■□□□□ 0.81
CLCN6-206ENST00000376496 TOPBP1Q92547 1522 aa20.09■□□□□ 0.81
CLCN6-206ENST00000376496 PDS5BQ9NTI5 1447 aa20.08■□□□□ 0.81
CLCN6-206ENST00000376496 RAPGEF2Q9Y4G8 1499 aa20.08■□□□□ 0.8
CLCN6-206ENST00000376496 CUX2O14529 1486 aa20.07■□□□□ 0.8
CLCN6-206ENST00000376496 URB2Q14146 1524 aaKnown RBP20.07■□□□□ 0.8
CLCN6-206ENST00000376496 RAD54L2Q9Y4B4 1467 aa20.06■□□□□ 0.8
CLCN6-206ENST00000376496 DNMBPQ6XZF7 1577 aa20.06■□□□□ 0.8
CLCN6-206ENST00000376496 KIF27Q86VH2 1401 aa20.06■□□□□ 0.8
CLCN6-206ENST00000376496 RANGAP1P46060 587 aaPredicted RBP20.06■□□□□ 0.8
CLCN6-206ENST00000376496 TNIKQ9UKE5 1360 aa20.05■□□□□ 0.8
CLCN6-206ENST00000376496 CEP162Q5TB80 1403 aa20.04■□□□□ 0.8
CLCN6-206ENST00000376496 KIF21BO75037 1637 aa20.04■□□□□ 0.8
CLCN6-206ENST00000376496 PPARGC1BQ86YN6 1023 aaKnown RBP20.03■□□□□ 0.8
CLCN6-206ENST00000376496 PCGF6Q9BYE7 350 aa20.03■□□□□ 0.8
CLCN6-206ENST00000376496 POLA1P09884 1462 aaPredicted RBP20.02■□□□□ 0.8
CLCN6-206ENST00000376496 PRXQ9BXM0 1461 aa19.95■□□□□ 0.78
CLCN6-206ENST00000376496 IGF1RP08069 1367 aa19.93■□□□□ 0.78
CLCN6-206ENST00000376496 TDRD9Q8NDG6 1382 aaKnown RBP19.88■□□□□ 0.77
CLCN6-206ENST00000376496 TTBK1Q5TCY1 1321 aaPredicted RBP19.87■□□□□ 0.77
CLCN6-206ENST00000376496 ABCA10Q8WWZ4 1543 aa19.87■□□□□ 0.77
CLCN6-206ENST00000376496 CLIP1P30622 1438 aa19.85■□□□□ 0.77
CLCN6-206ENST00000376496 ERICH3Q5RHP9 1530 aa19.85■□□□□ 0.77
CLCN6-206ENST00000376496 MRC2Q9UBG0 1479 aa19.84■□□□□ 0.77
CLCN6-206ENST00000376496 CARMIL1Q5VZK9 1371 aa19.83■□□□□ 0.76
CLCN6-206ENST00000376496 ERCC6Q03468 1493 aa19.83■□□□□ 0.76
CLCN6-206ENST00000376496 TRIM26Q12899 539 aaPredicted RBP19.8■□□□□ 0.76
CLCN6-206ENST00000376496 WDR97A6NE52 1622 aa19.78■□□□□ 0.76
CLCN6-206ENST00000376496 TARBP1Q13395 1621 aaKnown RBP19.74■□□□□ 0.75
CLCN6-206ENST00000376496 GAPVD1Q14C86 1478 aa19.73■□□□□ 0.75
CLCN6-206ENST00000376496 AQRO60306 1485 aaKnown RBP eCLIP19.71■□□□□ 0.757e-7■■■■■ 36.6
CLCN6-206ENST00000376496 ABCA5Q8WWZ7 1642 aa19.71■□□□□ 0.75
CLCN6-206ENST00000376496 WDR62O43379 1518 aa19.69■□□□□ 0.74
CLCN6-206ENST00000376496 ZNF608Q9ULD9 1512 aaPredicted RBP19.67■□□□□ 0.74
CLCN6-206ENST00000376496 THOC2Q8NI27 1593 aaKnown RBP19.65■□□□□ 0.74
CLCN6-206ENST00000376496 ARAP1Q96P48 1450 aa19.64■□□□□ 0.73
CLCN6-206ENST00000376496 VPS8Q8N3P4 1428 aa19.64■□□□□ 0.73
CLCN6-206ENST00000376496 CUL7Q14999 1698 aa19.62■□□□□ 0.73
CLCN6-206ENST00000376496 P3H3Q8IVL6 736 aa19.61■□□□□ 0.73
CLCN6-206ENST00000376496 ARHGAP35Q9NRY4 1499 aa19.61■□□□□ 0.73
CLCN6-206ENST00000376496 IFT140Q96RY7 1462 aa19.59■□□□□ 0.73
CLCN6-206ENST00000376496 PBRM1Q86U86 1689 aa19.57■□□□□ 0.72
CLCN6-206ENST00000376496 APLP2Q06481 763 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms