RNA–Protein interactions for RNA: ENST00000374606.9

PFDN6-201, Transcript of prefoldin subunit 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PFDN6, Length 740 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PFDN6-201ENST00000374606 NISCHQ9Y2I1 1504 aa40.95■■■■■ 4.15
PFDN6-201ENST00000374606 ABCC9O60706 1549 aa37.39■■■■□ 3.58
PFDN6-201ENST00000374606 CCDC180Q9P1Z9 1646 aa36.99■■■■□ 3.51
PFDN6-201ENST00000374606 DNAJC5BQ9UF47 199 aa35.42■■■■□ 3.26
PFDN6-201ENST00000374606 RB1CC1Q8TDY2 1594 aa35.42■■■■□ 3.26
PFDN6-201ENST00000374606 NACADO15069 1562 aa35.06■■■■□ 3.2
PFDN6-201ENST00000374606 DCAF8L2P0C7V8 631 aa34.71■■■■□ 3.15
PFDN6-201ENST00000374606 PABPN1Q86U42 306 aaKnown RBP eCLIP34.7■■■■□ 3.15
PFDN6-201ENST00000374606 UNC13AQ9UPW8 1703 aa34.58■■■■□ 3.13
PFDN6-201ENST00000374606 MYO15BQ96JP2 1530 aa34.44■■■■□ 3.1
PFDN6-201ENST00000374606 BICRAQ9NZM4 1560 aa34.36■■■■□ 3.09
PFDN6-201ENST00000374606 ZCCHC6Q5VYS8 1495 aaKnown RBP34.32■■■■□ 3.08
PFDN6-201ENST00000374606 SHROOM4Q9ULL8 1493 aa33.93■■■■□ 3.02
PFDN6-201ENST00000374606 DCAF1Q9Y4B6 1507 aa33.92■■■■□ 3.02
PFDN6-201ENST00000374606 CC2D2AQ9P2K1 1620 aa33.76■■■■□ 3
PFDN6-201ENST00000374606 CECR2Q9BXF3 1484 aa33.74■■■□□ 2.99
PFDN6-201ENST00000374606 SCRIBQ14160 1630 aa33.64■■■□□ 2.98
PFDN6-201ENST00000374606 EIF4G1Q04637 1599 aaKnown RBP33.58■■■□□ 2.97
PFDN6-201ENST00000374606 DNAJC5Q9H3Z4 198 aa32.89■■■□□ 2.86
PFDN6-201ENST00000374606 CUX2O14529 1486 aa32.45■■■□□ 2.79
PFDN6-201ENST00000374606 NCAPD3P42695 1498 aa32.35■■■□□ 2.77
PFDN6-201ENST00000374606 ERCC6Q03468 1493 aa32.35■■■□□ 2.77
PFDN6-201ENST00000374606 ATAD2BQ9ULI0 1458 aa32.19■■■□□ 2.74
PFDN6-201ENST00000374606 SMARCA2P51531 1590 aa32.11■■■□□ 2.73
PFDN6-201ENST00000374606 HMGXB3Q12766 1538 aa32.1■■■□□ 2.73
PFDN6-201ENST00000374606 SMARCA4P51532 1647 aa32.06■■■□□ 2.72
PFDN6-201ENST00000374606 NESP48681 1621 aa31.97■■■□□ 2.71
PFDN6-201ENST00000374606 BAZ1BQ9UIG0 1483 aaKnown RBP31.87■■■□□ 2.69
PFDN6-201ENST00000374606 BAZ1AQ9NRL2 1556 aaPredicted RBP31.84■■■□□ 2.69
PFDN6-201ENST00000374606 THOC2Q8NI27 1593 aaKnown RBP31.78■■■□□ 2.68
PFDN6-201ENST00000374606 PEG3Q9GZU2 1588 aa31.75■■■□□ 2.67
PFDN6-201ENST00000374606 LAMC3Q9Y6N6 1575 aa31.72■■■□□ 2.67
PFDN6-201ENST00000374606 MROH2BQ7Z745 1585 aa31.58■■■□□ 2.65
PFDN6-201ENST00000374606 KIF21AQ7Z4S6 1674 aa31.57■■■□□ 2.64
PFDN6-201ENST00000374606 PDS5BQ9NTI5 1447 aa31.55■■■□□ 2.64
PFDN6-201ENST00000374606 RSF1Q96T23 1441 aaPredicted RBP31.49■■■□□ 2.63
PFDN6-201ENST00000374606 CADPSQ9ULU8 1353 aa31.34■■■□□ 2.61
PFDN6-201ENST00000374606 WIZO95785 1651 aa31.32■■■□□ 2.6
PFDN6-201ENST00000374606 MRC2Q9UBG0 1479 aa31.31■■■□□ 2.6
PFDN6-201ENST00000374606 SUPT5HO00267 1087 aaKnown RBP31.29■■■□□ 2.6
PFDN6-201ENST00000374606 TRIM41Q8WV44 630 aa31.27■■■□□ 2.6
PFDN6-201ENST00000374606 WDR62O43379 1518 aa31.24■■■□□ 2.59
PFDN6-201ENST00000374606 CEP164Q9UPV0 1460 aa31.09■■■□□ 2.57
PFDN6-201ENST00000374606 TOP2AP11388 1531 aaKnown RBP31.04■■■□□ 2.56
PFDN6-201ENST00000374606 FANCD2Q9BXW9 1451 aa31■■■□□ 2.55
PFDN6-201ENST00000374606 CFTRP13569 1480 aa30.89■■■□□ 2.54
PFDN6-201ENST00000374606 OSCARQ8IYS5 282 aa30.84■■■□□ 2.53
PFDN6-201ENST00000374606 URB2Q14146 1524 aaKnown RBP30.77■■■□□ 2.52
PFDN6-201ENST00000374606 CCDC88BA6NC98 1476 aa30.61■■■□□ 2.49
PFDN6-201ENST00000374606 PRDM2Q13029 1718 aa30.59■■■□□ 2.49
PFDN6-201ENST00000374606 RIMBP3CA6NJZ7 1639 aa30.52■■■□□ 2.48
PFDN6-201ENST00000374606 RIMBP3BA6NNM3 1639 aa30.52■■■□□ 2.48
PFDN6-201ENST00000374606 RIMBP3Q9UFD9 1639 aa30.52■■■□□ 2.48
PFDN6-201ENST00000374606 IFT140Q96RY7 1462 aa30.49■■■□□ 2.47
PFDN6-201ENST00000374606 ZNF608Q9ULD9 1512 aaPredicted RBP30.45■■■□□ 2.47
PFDN6-201ENST00000374606 ARHGEF11O15085 1522 aa30.37■■■□□ 2.45
PFDN6-201ENST00000374606 TOPBP1Q92547 1522 aa30.37■■■□□ 2.45
PFDN6-201ENST00000374606 EIF4G3O43432 1585 aaKnown RBP30.29■■■□□ 2.44
PFDN6-201ENST00000374606 ABCC8Q09428 1581 aa30.28■■■□□ 2.44
PFDN6-201ENST00000374606 DNMBPQ6XZF7 1577 aa30.23■■■□□ 2.43
PFDN6-201ENST00000374606 CHD1O14646 1710 aa30.15■■■□□ 2.42
PFDN6-201ENST00000374606 CYB5RLQ6IPT4 315 aa30.14■■■□□ 2.42
PFDN6-201ENST00000374606 TARBP1Q13395 1621 aaKnown RBP30.12■■■□□ 2.41
PFDN6-201ENST00000374606 AQRO60306 1485 aaKnown RBP eCLIP30.12■■■□□ 2.41
PFDN6-201ENST00000374606 ARAP1Q96P48 1450 aa30.05■■■□□ 2.4
PFDN6-201ENST00000374606 POLA1P09884 1462 aaPredicted RBP30.02■■■□□ 2.4
PFDN6-201ENST00000374606 FBLN2P98095 1184 aa30.01■■■□□ 2.39
PFDN6-201ENST00000374606 TRHP20396 242 aaPredicted RBP29.97■■■□□ 2.39
PFDN6-201ENST00000374606 RAD54L2Q9Y4B4 1467 aa29.9■■■□□ 2.38
PFDN6-201ENST00000374606 SOGA1O94964 1423 aa29.87■■■□□ 2.37
PFDN6-201ENST00000374606 TDRD9Q8NDG6 1382 aaKnown RBP29.85■■■□□ 2.37
PFDN6-201ENST00000374606 WDR97A6NE52 1622 aa29.83■■■□□ 2.37
PFDN6-201ENST00000374606 SNAPC4Q5SXM2 1469 aa29.82■■■□□ 2.36
PFDN6-201ENST00000374606 CLASP1Q7Z460 1538 aa29.8■■■□□ 2.36
PFDN6-201ENST00000374606 FGD5Q6ZNL6 1462 aa29.77■■■□□ 2.36
PFDN6-201ENST00000374606 SYNJ1O43426 1573 aa29.76■■■□□ 2.35
PFDN6-201ENST00000374606 MAGI1Q96QZ7 1491 aaPredicted RBP29.74■■■□□ 2.35
PFDN6-201ENST00000374606 CHMP7Q8WUX9 453 aaPredicted RBP29.72■■■□□ 2.35
PFDN6-201ENST00000374606 WRNQ14191 1432 aaPredicted RBP eCLIP29.7■■■□□ 2.34
PFDN6-201ENST00000374606 GRIN2BQ13224 1484 aa29.68■■■□□ 2.34
PFDN6-201ENST00000374606 CUX1P39880 1505 aa29.66■■■□□ 2.34
PFDN6-201ENST00000374606 CHIC1Q5VXU3 224 aa29.65■■■□□ 2.34
PFDN6-201ENST00000374606 SYNJ2O15056 1496 aa29.64■■■□□ 2.34
PFDN6-201ENST00000374606 BIVM-ERCC5R4GMW8 1640 aa29.59■■■□□ 2.33
PFDN6-201ENST00000374606 TOP2BQ02880 1626 aa29.57■■■□□ 2.32
PFDN6-201ENST00000374606 PBRM1Q86U86 1689 aa29.53■■■□□ 2.32
PFDN6-201ENST00000374606 GAPVD1Q14C86 1478 aa29.5■■■□□ 2.31
PFDN6-201ENST00000374606 AEBP2Q6ZN18 517 aaPredicted RBP29.45■■■□□ 2.31
PFDN6-201ENST00000374606 ABCA5Q8WWZ7 1642 aa29.42■■■□□ 2.3
PFDN6-201ENST00000374606 ABCA10Q8WWZ4 1543 aa29.42■■■□□ 2.3
PFDN6-201ENST00000374606 GRIN2AQ12879 1464 aa29.29■■■□□ 2.28
PFDN6-201ENST00000374606 ERCC6L2Q5T890 1561 aa29.26■■■□□ 2.28
PFDN6-201ENST00000374606 ADAMTS12P58397 1594 aa29.24■■■□□ 2.27
PFDN6-201ENST00000374606 NUP160Q12769 1436 aa29.22■■■□□ 2.27
PFDN6-201ENST00000374606 CEP170Q5SW79 1584 aa29.22■■■□□ 2.27
PFDN6-201ENST00000374606 SHROOM2Q13796 1616 aa29.14■■■□□ 2.26
PFDN6-201ENST00000374606 FHAD1B1AJZ9 1412 aa29.12■■■□□ 2.25
PFDN6-201ENST00000374606 ERICH3Q5RHP9 1530 aa29.04■■■□□ 2.24
PFDN6-201ENST00000374606 KIF27Q86VH2 1401 aa29.02■■■□□ 2.24
PFDN6-201ENST00000374606 EEA1Q15075 1411 aa29.01■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms