RNA–Protein interactions for RNA: ENST00000374606.9

PFDN6-201, Transcript of prefoldin subunit 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PFDN6, Length 740 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PFDN6-201ENST00000374606 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.15■■□□□ 1.945e-21■□□□□ 10
PFDN6-201ENST00000374606 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.81■□□□□ 0.61e-20■■■■■ 215.3
PFDN6-201ENST00000374606 SF3B4Q15427 424 aaKnown RBP eCLIP15.59■□□□□ 0.091e-14■■■□□ 18.9
PFDN6-201ENST00000374606 SF3A3Q12874 501 aaKnown RBP eCLIP16.79■□□□□ 0.282e-12■■■■■ 31.3
PFDN6-201ENST00000374606 GTF2F1P35269 517 aaKnown RBP eCLIP18.61■□□□□ 0.577e-12■■■■□ 21.5
PFDN6-201ENST00000374606 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.82■□□□□ 0.128e-12■□□□□ 8.5
PFDN6-201ENST00000374606 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.77■■□□□ 1.722e-9■□□□□ 9.3
PFDN6-201ENST00000374606 ZNF622Q969S3 477 aaKnown RBP eCLIP21.85■■□□□ 1.093e-9■□□□□ 10.4
PFDN6-201ENST00000374606 PABPC4Q13310 644 aaKnown RBP eCLIP20.16■□□□□ 0.824e-9■■■□□ 17.5
PFDN6-201ENST00000374606 DDX3XO00571 662 aaKnown RBP eCLIP18.56■□□□□ 0.564e-9■■■■□ 21.5
PFDN6-201ENST00000374606 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.44■□□□□ 0.862e-8■■□□□ 14.5
PFDN6-201ENST00000374606 DDX6P26196 483 aaKnown RBP eCLIP18.16■□□□□ 0.52e-8■■■□□ 14.6
PFDN6-201ENST00000374606 U2AF2P26368 475 aaKnown RBP eCLIP20.04■□□□□ 0.82e-8■■□□□ 12.2
PFDN6-201ENST00000374606 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.86■□□□□ 0.612e-8■■□□□ 11.6
PFDN6-201ENST00000374606 QKIQ96PU8 341 aaKnown RBP eCLIP17.92■□□□□ 0.463e-8■■■□□ 15.8
PFDN6-201ENST00000374606 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.93■■□□□ 1.264e-8■■□□□ 13.1
PFDN6-201ENST00000374606 PRPF4O43172 522 aaKnown RBP eCLIP17.17■□□□□ 0.347e-8■■■□□ 14.7
PFDN6-201ENST00000374606 PUM1Q14671 1186 aaKnown RBP eCLIP18.08■□□□□ 0.481e-7■■■■□ 20.2
PFDN6-201ENST00000374606 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.4■□□□□ 0.71e-7■□□□□ 9.6
PFDN6-201ENST00000374606 EFTUD2Q15029 972 aaKnown RBP eCLIP17.45■□□□□ 0.382e-7■■■■■ 32.6
PFDN6-201ENST00000374606 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.4□□□□□ -0.12e-7■■■■■ 30
PFDN6-201ENST00000374606 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.5■□□□□ 0.552e-7■■■■■ 40.2
PFDN6-201ENST00000374606 ZC3H11AO75152 810 aaKnown RBP eCLIP18.83■□□□□ 0.62e-7■■■□□ 16.9
PFDN6-201ENST00000374606 FUSP35637 526 aaKnown RBP eCLIP11.28□□□□□ -0.63e-7■□□□□ 8.8
PFDN6-201ENST00000374606 EIF3GO75821 320 aaKnown RBP eCLIP13.33□□□□□ -0.284e-7■■□□□ 11.7
PFDN6-201ENST00000374606 PCBP2Q15366 365 aaKnown RBP eCLIP16.97■□□□□ 0.314e-7■■■■□ 19.9
PFDN6-201ENST00000374606 RPS3P23396 243 aaKnown RBP eCLIP17.3■□□□□ 0.366e-7■■■□□ 19.1
PFDN6-201ENST00000374606 LARP4Q71RC2 724 aaKnown RBP eCLIP16.69■□□□□ 0.268e-7■■■□□ 15.2
PFDN6-201ENST00000374606 TROVE2P10155 538 aaKnown RBP eCLIP16.85■□□□□ 0.291e-6■□□□□ 10.1
PFDN6-201ENST00000374606 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.15■□□□□ 0.981e-6■□□□□ 10.6
PFDN6-201ENST00000374606 NCBP2P52298 156 aaKnown RBP eCLIP16.42■□□□□ 0.222e-6■□□□□ 9.7
PFDN6-201ENST00000374606 PPIGQ13427 754 aaKnown RBP eCLIP19.4■□□□□ 0.72e-6■■□□□ 13.2
PFDN6-201ENST00000374606 PTBP1P26599 531 aaKnown RBP eCLIP14.64□□□□□ -0.072e-6■□□□□ 10.8
PFDN6-201ENST00000374606 HLTFQ14527 1009 aaKnown RBP eCLIP17.74■□□□□ 0.434e-6■■■□□ 18.1
Retrieved 34 of 34 RNA–protein pairs in 7.1 ms