RNA–Protein interactions for RNA: ENST00000373589.8

HDAC8-209, Transcript of histone deacetylase 8, humanhuman

TSL 2 BASIC

Gene HDAC8, Length 1,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC8-209ENST00000373589 NISCHQ9Y2I1 1504 aa35.31■■■■□ 3.24
HDAC8-209ENST00000373589 CCDC180Q9P1Z9 1646 aa30.67■■■□□ 2.5
HDAC8-209ENST00000373589 ZCCHC6Q5VYS8 1495 aaKnown RBP29.7■■■□□ 2.35
HDAC8-209ENST00000373589 DCAF1Q9Y4B6 1507 aa29.21■■■□□ 2.27
HDAC8-209ENST00000373589 DCAF8L2P0C7V8 631 aa29.06■■■□□ 2.24
HDAC8-209ENST00000373589 SHROOM4Q9ULL8 1493 aa28.88■■■□□ 2.21
HDAC8-209ENST00000373589 ABCC9O60706 1549 aa28.88■■■□□ 2.21
HDAC8-209ENST00000373589 MYO15BQ96JP2 1530 aa28.81■■■□□ 2.2
HDAC8-209ENST00000373589 NACADO15069 1562 aa28.55■■■□□ 2.16
HDAC8-209ENST00000373589 RB1CC1Q8TDY2 1594 aa28.25■■■□□ 2.11
HDAC8-209ENST00000373589 SCRIBQ14160 1630 aa28.23■■■□□ 2.11
HDAC8-209ENST00000373589 SUPT5HO00267 1087 aaKnown RBP27.87■■■□□ 2.05
HDAC8-209ENST00000373589 UNC13AQ9UPW8 1703 aa27.68■■■□□ 2.02
HDAC8-209ENST00000373589 RSF1Q96T23 1441 aaPredicted RBP27.47■■□□□ 1.99
HDAC8-209ENST00000373589 BICRAQ9NZM4 1560 aa27.44■■□□□ 1.98
HDAC8-209ENST00000373589 CECR2Q9BXF3 1484 aa27.43■■□□□ 1.98
HDAC8-209ENST00000373589 MROH2BQ7Z745 1585 aa27.29■■□□□ 1.96
HDAC8-209ENST00000373589 PABPN1Q86U42 306 aaKnown RBP eCLIP27.28■■□□□ 1.96
HDAC8-209ENST00000373589 BAZ1AQ9NRL2 1556 aaPredicted RBP27.23■■□□□ 1.95
HDAC8-209ENST00000373589 SMARCA4P51532 1647 aa27.09■■□□□ 1.93
HDAC8-209ENST00000373589 WIZO95785 1651 aa27.05■■□□□ 1.92
HDAC8-209ENST00000373589 CHIC1Q5VXU3 224 aa26.81■■□□□ 1.88
HDAC8-209ENST00000373589 TOP2AP11388 1531 aaKnown RBP26.78■■□□□ 1.88
HDAC8-209ENST00000373589 PEG3Q9GZU2 1588 aa26.78■■□□□ 1.88
HDAC8-209ENST00000373589 ATAD2BQ9ULI0 1458 aa26.63■■□□□ 1.85
HDAC8-209ENST00000373589 SMARCA2P51531 1590 aa26.59■■□□□ 1.85
HDAC8-209ENST00000373589 EIF4G1Q04637 1599 aaKnown RBP26.58■■□□□ 1.85
HDAC8-209ENST00000373589 CCDC88BA6NC98 1476 aa26.53■■□□□ 1.84
HDAC8-209ENST00000373589 BAZ1BQ9UIG0 1483 aaKnown RBP26.46■■□□□ 1.83
HDAC8-209ENST00000373589 NCAPD3P42695 1498 aa26.38■■□□□ 1.81
HDAC8-209ENST00000373589 HMGXB3Q12766 1538 aa26.34■■□□□ 1.81
HDAC8-209ENST00000373589 TRIM41Q8WV44 630 aa26.19■■□□□ 1.78
HDAC8-209ENST00000373589 CC2D2AQ9P2K1 1620 aa26.13■■□□□ 1.77
HDAC8-209ENST00000373589 ABCC8Q09428 1581 aa26■■□□□ 1.75
HDAC8-209ENST00000373589 CFTRP13569 1480 aa25.84■■□□□ 1.73
HDAC8-209ENST00000373589 WRNQ14191 1432 aaPredicted RBP eCLIP25.82■■□□□ 1.72
HDAC8-209ENST00000373589 LOC105371045A0A1W2PR82 267 aa25.77■■□□□ 1.72
HDAC8-209ENST00000373589 SYNJ1O43426 1573 aa25.71■■□□□ 1.71
HDAC8-209ENST00000373589 CADPSQ9ULU8 1353 aa25.71■■□□□ 1.71
HDAC8-209ENST00000373589 FAM9AQ8IZU1 332 aaPredicted RBP25.71■■□□□ 1.71
HDAC8-209ENST00000373589 PRDM2Q13029 1718 aa25.63■■□□□ 1.69
HDAC8-209ENST00000373589 TOP2BQ02880 1626 aa25.59■■□□□ 1.69
HDAC8-209ENST00000373589 SOGA1O94964 1423 aa25.57■■□□□ 1.68
HDAC8-209ENST00000373589 BIVM-ERCC5R4GMW8 1640 aa25.55■■□□□ 1.68
HDAC8-209ENST00000373589 EEA1Q15075 1411 aa25.54■■□□□ 1.68
HDAC8-209ENST00000373589 CUX1P39880 1505 aa25.5■■□□□ 1.67
HDAC8-209ENST00000373589 DNAJC5BQ9UF47 199 aa25.49■■□□□ 1.67
HDAC8-209ENST00000373589 RUSC2Q8N2Y8 1516 aa25.47■■□□□ 1.67
HDAC8-209ENST00000373589 LAMC3Q9Y6N6 1575 aa25.42■■□□□ 1.66
HDAC8-209ENST00000373589 NESP48681 1621 aa25.42■■□□□ 1.66
HDAC8-209ENST00000373589 FANCD2Q9BXW9 1451 aa25.41■■□□□ 1.66
HDAC8-209ENST00000373589 CSRNP3Q8WYN3 585 aa25.4■■□□□ 1.66
HDAC8-209ENST00000373589 EHMT2Q96KQ7 1210 aa25.32■■□□□ 1.64
HDAC8-209ENST00000373589 PDS5BQ9NTI5 1447 aa25.23■■□□□ 1.63
HDAC8-209ENST00000373589 CEP164Q9UPV0 1460 aa25.22■■□□□ 1.63
HDAC8-209ENST00000373589 DNMBPQ6XZF7 1577 aa25.2■■□□□ 1.63
HDAC8-209ENST00000373589 KIF21BO75037 1637 aa25.19■■□□□ 1.62
HDAC8-209ENST00000373589 GOLGA3Q08378 1498 aa25.19■■□□□ 1.62
HDAC8-209ENST00000373589 FGD5Q6ZNL6 1462 aa25.19■■□□□ 1.62
HDAC8-209ENST00000373589 TNIKQ9UKE5 1360 aa25.16■■□□□ 1.62
HDAC8-209ENST00000373589 TOPBP1Q92547 1522 aa25.16■■□□□ 1.62
HDAC8-209ENST00000373589 KIF27Q86VH2 1401 aa25.15■■□□□ 1.62
HDAC8-209ENST00000373589 URB2Q14146 1524 aaKnown RBP25.1■■□□□ 1.61
HDAC8-209ENST00000373589 KIF21AQ7Z4S6 1674 aa25.07■■□□□ 1.6
HDAC8-209ENST00000373589 PRXQ9BXM0 1461 aa25.06■■□□□ 1.6
HDAC8-209ENST00000373589 POLA1P09884 1462 aaPredicted RBP25.05■■□□□ 1.6
HDAC8-209ENST00000373589 UBTFP17480 764 aaKnown RBP25.05■■□□□ 1.6
HDAC8-209ENST00000373589 CUX2O14529 1486 aa25.05■■□□□ 1.6
HDAC8-209ENST00000373589 RAPGEF2Q9Y4G8 1499 aa25.04■■□□□ 1.6
HDAC8-209ENST00000373589 CEP162Q5TB80 1403 aa25.02■■□□□ 1.6
HDAC8-209ENST00000373589 ERICH3Q5RHP9 1530 aa25■■□□□ 1.59
HDAC8-209ENST00000373589 ABCA10Q8WWZ4 1543 aa24.98■■□□□ 1.59
HDAC8-209ENST00000373589 RAD54L2Q9Y4B4 1467 aa24.97■■□□□ 1.59
HDAC8-209ENST00000373589 IGF1RP08069 1367 aa24.95■■□□□ 1.58
HDAC8-209ENST00000373589 MRC2Q9UBG0 1479 aa24.89■■□□□ 1.58
HDAC8-209ENST00000373589 WDR97A6NE52 1622 aa24.86■■□□□ 1.57
HDAC8-209ENST00000373589 CARMIL1Q5VZK9 1371 aa24.8■■□□□ 1.56
HDAC8-209ENST00000373589 CLIP1P30622 1438 aa24.79■■□□□ 1.56
HDAC8-209ENST00000373589 TARBP1Q13395 1621 aaKnown RBP24.77■■□□□ 1.56
HDAC8-209ENST00000373589 WDR62O43379 1518 aa24.76■■□□□ 1.55
HDAC8-209ENST00000373589 ABCA5Q8WWZ7 1642 aa24.75■■□□□ 1.55
HDAC8-209ENST00000373589 PCGF6Q9BYE7 350 aa24.73■■□□□ 1.55
HDAC8-209ENST00000373589 ERCC6Q03468 1493 aa24.72■■□□□ 1.55
HDAC8-209ENST00000373589 TDRD9Q8NDG6 1382 aaKnown RBP24.71■■□□□ 1.55
HDAC8-209ENST00000373589 TRIM26Q12899 539 aaPredicted RBP24.71■■□□□ 1.55
HDAC8-209ENST00000373589 GAPVD1Q14C86 1478 aa24.69■■□□□ 1.54
HDAC8-209ENST00000373589 CUL7Q14999 1698 aa24.69■■□□□ 1.54
HDAC8-209ENST00000373589 THOC2Q8NI27 1593 aaKnown RBP24.65■■□□□ 1.54
HDAC8-209ENST00000373589 IFT140Q96RY7 1462 aa24.62■■□□□ 1.53
HDAC8-209ENST00000373589 VPS8Q8N3P4 1428 aa24.61■■□□□ 1.53
HDAC8-209ENST00000373589 RANGAP1P46060 587 aaPredicted RBP24.57■■□□□ 1.52
HDAC8-209ENST00000373589 ARAP1Q96P48 1450 aa24.55■■□□□ 1.52
HDAC8-209ENST00000373589 AQRO60306 1485 aaKnown RBP eCLIP24.53■■□□□ 1.52
HDAC8-209ENST00000373589 PPARGC1BQ86YN6 1023 aaKnown RBP24.52■■□□□ 1.52
HDAC8-209ENST00000373589 ARHGAP35Q9NRY4 1499 aa24.52■■□□□ 1.51
HDAC8-209ENST00000373589 PBRM1Q86U86 1689 aa24.5■■□□□ 1.51
HDAC8-209ENST00000373589 ZNF608Q9ULD9 1512 aaPredicted RBP24.5■■□□□ 1.51
HDAC8-209ENST00000373589 GRIN2BQ13224 1484 aa24.48■■□□□ 1.51
HDAC8-209ENST00000373589 FHAD1B1AJZ9 1412 aa24.44■■□□□ 1.5
HDAC8-209ENST00000373589 ADAMTS12P58397 1594 aa24.41■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms