RNA–Protein interactions for RNA: ENST00000373589.8

HDAC8-209, Transcript of histone deacetylase 8, humanhuman

TSL 2 BASIC

Gene HDAC8, Length 1,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC8-209ENST00000373589 SF3B4Q15427 424 aaKnown RBP eCLIP13.59□□□□□ -0.234e-73■■■■■ 236.6
HDAC8-209ENST00000373589 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.94■□□□□ 0.32e-6■■■■■ 226.9
HDAC8-209ENST00000373589 SF3B1O75533 1304 aaKnown RBP eCLIP16.31■□□□□ 0.22e-6■■■■■ 101.5
HDAC8-209ENST00000373589 SF3A3Q12874 501 aaKnown RBP eCLIP15.8■□□□□ 0.121e-323■■■■■ 83.9
HDAC8-209ENST00000373589 AARSP49588 968 aaKnown RBP eCLIP16.53■□□□□ 0.243e-6■■■■■ 61.8
HDAC8-209ENST00000373589 GPKOWQ92917 476 aaPredicted RBP eCLIP18.03■□□□□ 0.481e-19■■■■■ 59.4
HDAC8-209ENST00000373589 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.54■□□□□ 0.242e-6■■■■■ 46.8
HDAC8-209ENST00000373589 PTBP1P26599 531 aaKnown RBP eCLIP13.88□□□□□ -0.196e-8■■■■■ 40
HDAC8-209ENST00000373589 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.39□□□□□ -0.439e-10■■■■■ 36.7
HDAC8-209ENST00000373589 PCBP2Q15366 365 aaKnown RBP eCLIP15.46■□□□□ 0.061e-8■■■■■ 36
HDAC8-209ENST00000373589 SMNDC1O75940 238 aaKnown RBP eCLIP14.76□□□□□ -0.051e-16■■■■■ 35
HDAC8-209ENST00000373589 NSUN2Q08J23 767 aaKnown RBP eCLIP15.83■□□□□ 0.131e-5■■■■□ 24.6
HDAC8-209ENST00000373589 QKIQ96PU8 341 aaKnown RBP eCLIP16.25■□□□□ 0.191e-6■■■■□ 21.3
HDAC8-209ENST00000373589 LARP4Q71RC2 724 aaKnown RBP eCLIP15.43■□□□□ 0.061e-6■■■□□ 19.2
HDAC8-209ENST00000373589 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.71■□□□□ 0.274e-6■■■□□ 15.2
HDAC8-209ENST00000373589 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.97■□□□□ 0.795e-6■■□□□ 11.8
Retrieved 16 of 16 RNA–protein pairs in 5.7 ms