RNA–Protein interactions for RNA: ENST00000373386.6

GARNL3-201, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 2

Gene GARNL3, Length 3,143 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-201ENST00000373386 NISCHQ9Y2I1 1504 aa16.8■□□□□ 0.28
GARNL3-201ENST00000373386 PELP1Q8IZL8 1130 aaKnown RBP14.8□□□□□ -0.04
GARNL3-201ENST00000373386 MYT1Q01538 1121 aa14.76□□□□□ -0.05
GARNL3-201ENST00000373386 CCDC180Q9P1Z9 1646 aa14.52□□□□□ -0.08
GARNL3-201ENST00000373386 TTBK1Q5TCY1 1321 aaPredicted RBP14.34□□□□□ -0.11
GARNL3-201ENST00000373386 ZCCHC6Q5VYS8 1495 aaKnown RBP14.25□□□□□ -0.13
GARNL3-201ENST00000373386 SLC24A1O60721 1099 aa14.18□□□□□ -0.14
GARNL3-201ENST00000373386 DCAF1Q9Y4B6 1507 aa14.03□□□□□ -0.16
GARNL3-201ENST00000373386 PRKCSHP14314 528 aaPredicted RBP13.9□□□□□ -0.18
GARNL3-201ENST00000373386 SHROOM4Q9ULL8 1493 aa13.78□□□□□ -0.2
GARNL3-201ENST00000373386 ERICH6Q7L0X2 663 aa13.78□□□□□ -0.2
GARNL3-201ENST00000373386 APLP2Q06481 763 aa13.7□□□□□ -0.22
GARNL3-201ENST00000373386 MYO15BQ96JP2 1530 aa13.7□□□□□ -0.22
GARNL3-201ENST00000373386 SUPT5HO00267 1087 aaKnown RBP13.52□□□□□ -0.25
GARNL3-201ENST00000373386 ABCC9O60706 1549 aa13.45□□□□□ -0.26
GARNL3-201ENST00000373386 DAXXQ9UER7 740 aaPredicted RBP13.43□□□□□ -0.26
GARNL3-201ENST00000373386 DCAF8L2P0C7V8 631 aa13.36□□□□□ -0.27
GARNL3-201ENST00000373386 NACADO15069 1562 aa13.35□□□□□ -0.27
GARNL3-201ENST00000373386 CHIC1Q5VXU3 224 aa13.34□□□□□ -0.27
GARNL3-201ENST00000373386 BCL11AQ9H165 835 aa13.26□□□□□ -0.29
GARNL3-201ENST00000373386 SCRIBQ14160 1630 aa13.23□□□□□ -0.29
GARNL3-201ENST00000373386 RSF1Q96T23 1441 aaPredicted RBP13.19□□□□□ -0.3
GARNL3-201ENST00000373386 RB1CC1Q8TDY2 1594 aa13.17□□□□□ -0.3
GARNL3-201ENST00000373386 HRCP23327 699 aa13.13□□□□□ -0.31
GARNL3-201ENST00000373386 FAM9AQ8IZU1 332 aaPredicted RBP13.02□□□□□ -0.33
GARNL3-201ENST00000373386 BAZ1AQ9NRL2 1556 aaPredicted RBP12.96□□□□□ -0.33
GARNL3-201ENST00000373386 MROH2BQ7Z745 1585 aa12.94□□□□□ -0.34
GARNL3-201ENST00000373386 EIF5BO60841 1220 aaKnown RBP12.93□□□□□ -0.34
GARNL3-201ENST00000373386 PCGF6Q9BYE7 350 aa12.93□□□□□ -0.34
GARNL3-201ENST00000373386 CECR2Q9BXF3 1484 aa12.91□□□□□ -0.34
GARNL3-201ENST00000373386 SCAF1Q9H7N4 1312 aaKnown RBP12.9□□□□□ -0.34
GARNL3-201ENST00000373386 EIF4G1Q04637 1599 aaKnown RBP12.87□□□□□ -0.35
GARNL3-201ENST00000373386 WIZO95785 1651 aa12.87□□□□□ -0.35
GARNL3-201ENST00000373386 UNC13AQ9UPW8 1703 aa12.85□□□□□ -0.35
GARNL3-201ENST00000373386 TOP2AP11388 1531 aaKnown RBP12.82□□□□□ -0.36
GARNL3-201ENST00000373386 SMARCA4P51532 1647 aa12.81□□□□□ -0.36
GARNL3-201ENST00000373386 TRIM41Q8WV44 630 aa12.77□□□□□ -0.37
GARNL3-201ENST00000373386 PEG3Q9GZU2 1588 aa12.74□□□□□ -0.37
GARNL3-201ENST00000373386 LOC105371045A0A1W2PR82 267 aa12.73□□□□□ -0.37
GARNL3-201ENST00000373386 CENPBP07199 599 aaPredicted RBP12.73□□□□□ -0.37
GARNL3-201ENST00000373386 PPARGC1BQ86YN6 1023 aaKnown RBP12.73□□□□□ -0.37
GARNL3-201ENST00000373386 TRIM26Q12899 539 aaPredicted RBP12.71□□□□□ -0.37
GARNL3-201ENST00000373386 SMARCA2P51531 1590 aa12.69□□□□□ -0.38
GARNL3-201ENST00000373386 BICRAQ9NZM4 1560 aa12.68□□□□□ -0.38
GARNL3-201ENST00000373386 PABPN1Q86U42 306 aaKnown RBP eCLIP12.64□□□□□ -0.39
GARNL3-201ENST00000373386 CCDC88BA6NC98 1476 aa12.63□□□□□ -0.39
GARNL3-201ENST00000373386 EEA1Q15075 1411 aa12.58□□□□□ -0.4
GARNL3-201ENST00000373386 ZEB1P37275 1124 aaPredicted RBP12.58□□□□□ -0.4
GARNL3-201ENST00000373386 NCBP3Q53F19 620 aaKnown RBP12.56□□□□□ -0.4
GARNL3-201ENST00000373386 PLEKHG5O94827 1062 aa12.51□□□□□ -0.41
GARNL3-201ENST00000373386 WRNQ14191 1432 aaPredicted RBP eCLIP12.5□□□□□ -0.41
GARNL3-201ENST00000373386 ABCC8Q09428 1581 aa12.47□□□□□ -0.41
GARNL3-201ENST00000373386 ATAD2BQ9ULI0 1458 aa12.44□□□□□ -0.42
GARNL3-201ENST00000373386 UBE2Q2Q8WVN8 375 aa12.43□□□□□ -0.42
GARNL3-201ENST00000373386 TNIKQ9UKE5 1360 aa12.43□□□□□ -0.42
GARNL3-201ENST00000373386 KIF21BO75037 1637 aa12.4□□□□□ -0.43
GARNL3-201ENST00000373386 ANP32EQ9BTT0 268 aa12.39□□□□□ -0.43
GARNL3-201ENST00000373386 BAZ1BQ9UIG0 1483 aaKnown RBP12.38□□□□□ -0.43
GARNL3-201ENST00000373386 PODXL2Q9NZ53 605 aa12.37□□□□□ -0.43
GARNL3-201ENST00000373386 HMGXB3Q12766 1538 aa12.36□□□□□ -0.43
GARNL3-201ENST00000373386 GOLGA3Q08378 1498 aa12.36□□□□□ -0.43
GARNL3-201ENST00000373386 CEP162Q5TB80 1403 aa12.34□□□□□ -0.43
GARNL3-201ENST00000373386 RANGAP1P46060 587 aaPredicted RBP12.34□□□□□ -0.43
GARNL3-201ENST00000373386 SOGA1O94964 1423 aa12.34□□□□□ -0.43
GARNL3-201ENST00000373386 SYNJ1O43426 1573 aa12.33□□□□□ -0.44
GARNL3-201ENST00000373386 ARXQ96QS3 562 aa12.33□□□□□ -0.44
GARNL3-201ENST00000373386 BIVM-ERCC5R4GMW8 1640 aa12.32□□□□□ -0.44
GARNL3-201ENST00000373386 CEP164Q9UPV0 1460 aa12.32□□□□□ -0.44
GARNL3-201ENST00000373386 TOP2BQ02880 1626 aa12.31□□□□□ -0.44
GARNL3-201ENST00000373386 CSRNP3Q8WYN3 585 aa12.31□□□□□ -0.44
GARNL3-201ENST00000373386 NCAPD3P42695 1498 aa12.29□□□□□ -0.44
GARNL3-201ENST00000373386 ACIN1Q9UKV3 1341 aaKnown RBP12.27□□□□□ -0.45
GARNL3-201ENST00000373386 RUSC2Q8N2Y8 1516 aa12.24□□□□□ -0.45
GARNL3-201ENST00000373386 PRDM2Q13029 1718 aa12.23□□□□□ -0.45
GARNL3-201ENST00000373386 ERICH3Q5RHP9 1530 aa12.22□□□□□ -0.45
GARNL3-201ENST00000373386 EHMT2Q96KQ7 1210 aa12.19□□□□□ -0.46
GARNL3-201ENST00000373386 PKNOX2Q96KN3 472 aa12.18□□□□□ -0.46
GARNL3-201ENST00000373386 ANO8Q9HCE9 1232 aaPredicted RBP12.17□□□□□ -0.46
GARNL3-201ENST00000373386 KLHL34Q8N239 644 aa12.17□□□□□ -0.46
GARNL3-201ENST00000373386 GTF3C3Q9Y5Q9 886 aa12.16□□□□□ -0.46
GARNL3-201ENST00000373386 CFTRP13569 1480 aa12.15□□□□□ -0.47
GARNL3-201ENST00000373386 VPS8Q8N3P4 1428 aa12.14□□□□□ -0.47
GARNL3-201ENST00000373386 CC2D2AQ9P2K1 1620 aa12.13□□□□□ -0.47
GARNL3-201ENST00000373386 PRXQ9BXM0 1461 aa12.13□□□□□ -0.47
GARNL3-201ENST00000373386 CLIP1P30622 1438 aa12.12□□□□□ -0.47
GARNL3-201ENST00000373386 PLPPR3Q6T4P5 718 aa12.12□□□□□ -0.47
GARNL3-201ENST00000373386 RTN4Q9NQC3 1192 aaKnown RBP12.12□□□□□ -0.47
GARNL3-201ENST00000373386 CCER1Q8TC90 406 aaPredicted RBP12.11□□□□□ -0.47
GARNL3-201ENST00000373386 UBTFP17480 764 aaKnown RBP12.1□□□□□ -0.47
GARNL3-201ENST00000373386 RAPGEF2Q9Y4G8 1499 aa12.09□□□□□ -0.47
GARNL3-201ENST00000373386 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.09□□□□□ -0.47
GARNL3-201ENST00000373386 CUX1P39880 1505 aa12.08□□□□□ -0.48
GARNL3-201ENST00000373386 TIMELESSQ9UNS1 1208 aa12.06□□□□□ -0.48
GARNL3-201ENST00000373386 NEUROD1Q13562 356 aa12.05□□□□□ -0.48
GARNL3-201ENST00000373386 DNAJC5BQ9UF47 199 aa12.05□□□□□ -0.48
GARNL3-201ENST00000373386 KIF27Q86VH2 1401 aa12.04□□□□□ -0.48
GARNL3-201ENST00000373386 NEFLP07196 543 aa12.01□□□□□ -0.49
GARNL3-201ENST00000373386 DIEXFQ68CQ4 756 aaKnown RBP12□□□□□ -0.49
GARNL3-201ENST00000373386 PDIA4P13667 645 aaKnown RBP11.98□□□□□ -0.49
GARNL3-201ENST00000373386 ARAP1Q96P48 1450 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms