RNA–Protein interactions for RNA: ENST00000373298.6

ITM2A-201, Transcript of integral membrane protein 2A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ITM2A, Length 1,641 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITM2A-201ENST00000373298 AEBP2Q6ZN18 517 aaPredicted RBP26.37■■□□□ 1.81
ITM2A-201ENST00000373298 CHIC1Q5VXU3 224 aa24.68■■□□□ 1.54
ITM2A-201ENST00000373298 NISCHQ9Y2I1 1504 aa22.79■■□□□ 1.24
ITM2A-201ENST00000373298 SENP3Q9H4L4 574 aaPredicted RBP22.53■■□□□ 1.2
ITM2A-201ENST00000373298 PHF23Q9BUL5 403 aaPredicted RBP22.19■■□□□ 1.14
ITM2A-201ENST00000373298 FOXD1Q16676 465 aa21.05■□□□□ 0.96
ITM2A-201ENST00000373298 CCDC180Q9P1Z9 1646 aa20.09■□□□□ 0.81
ITM2A-201ENST00000373298 POTEDQ86YR6 584 aa20.02■□□□□ 0.79
ITM2A-201ENST00000373298 MSH5O43196 834 aa19.84■□□□□ 0.77
ITM2A-201ENST00000373298 ABCC9O60706 1549 aa19.56■□□□□ 0.72
ITM2A-201ENST00000373298 PIAS4Q8N2W9 510 aaPredicted RBP19.52■□□□□ 0.72
ITM2A-201ENST00000373298 PLPPR3Q6T4P5 718 aa19.51■□□□□ 0.71
ITM2A-201ENST00000373298 PPP6R1Q9UPN7 881 aa19.4■□□□□ 0.7
ITM2A-201ENST00000373298 ADRA2BP18089 450 aa19.29■□□□□ 0.68
ITM2A-201ENST00000373298 ZCCHC6Q5VYS8 1495 aaKnown RBP19.04■□□□□ 0.64
ITM2A-201ENST00000373298 DCAF8L2P0C7V8 631 aa19.01■□□□□ 0.63
ITM2A-201ENST00000373298 NACADO15069 1562 aa18.83■□□□□ 0.6
ITM2A-201ENST00000373298 RB1CC1Q8TDY2 1594 aa18.8■□□□□ 0.6
ITM2A-201ENST00000373298 DCAF1Q9Y4B6 1507 aa18.79■□□□□ 0.6
ITM2A-201ENST00000373298 MYO15BQ96JP2 1530 aa18.75■□□□□ 0.59
ITM2A-201ENST00000373298 UNC13AQ9UPW8 1703 aa18.52■□□□□ 0.55
ITM2A-201ENST00000373298 SCRIBQ14160 1630 aa18.47■□□□□ 0.55
ITM2A-201ENST00000373298 PABPN1Q86U42 306 aaKnown RBP eCLIP18.36■□□□□ 0.53
ITM2A-201ENST00000373298 BICRAQ9NZM4 1560 aa18.34■□□□□ 0.53
ITM2A-201ENST00000373298 SHROOM4Q9ULL8 1493 aa18.27■□□□□ 0.52
ITM2A-201ENST00000373298 MAPK8IP2Q13387 824 aaPredicted RBP17.84■□□□□ 0.45
ITM2A-201ENST00000373298 DNAJC5BQ9UF47 199 aa17.84■□□□□ 0.45
ITM2A-201ENST00000373298 DMRT2Q9Y5R5 561 aa17.83■□□□□ 0.44
ITM2A-201ENST00000373298 CECR2Q9BXF3 1484 aa17.82■□□□□ 0.44
ITM2A-201ENST00000373298 EIF4G1Q04637 1599 aaKnown RBP17.79■□□□□ 0.44
ITM2A-201ENST00000373298 CC2D2AQ9P2K1 1620 aa17.68■□□□□ 0.42
ITM2A-201ENST00000373298 SMARCA4P51532 1647 aa17.64■□□□□ 0.42
ITM2A-201ENST00000373298 SCAF1Q9H7N4 1312 aaKnown RBP17.64■□□□□ 0.41
ITM2A-201ENST00000373298 MROH2BQ7Z745 1585 aa17.63■□□□□ 0.41
ITM2A-201ENST00000373298 BAZ1AQ9NRL2 1556 aaPredicted RBP17.61■□□□□ 0.41
ITM2A-201ENST00000373298 ATAD2BQ9ULI0 1458 aa17.48■□□□□ 0.39
ITM2A-201ENST00000373298 RSF1Q96T23 1441 aaPredicted RBP17.48■□□□□ 0.39
ITM2A-201ENST00000373298 WIZO95785 1651 aa17.47■□□□□ 0.39
ITM2A-201ENST00000373298 PEG3Q9GZU2 1588 aa17.43■□□□□ 0.38
ITM2A-201ENST00000373298 SMARCA2P51531 1590 aa17.4■□□□□ 0.38
ITM2A-201ENST00000373298 NCAPD3P42695 1498 aa17.4■□□□□ 0.38
ITM2A-201ENST00000373298 BAZ1BQ9UIG0 1483 aaKnown RBP17.33■□□□□ 0.36
ITM2A-201ENST00000373298 HMGXB3Q12766 1538 aa17.32■□□□□ 0.36
ITM2A-201ENST00000373298 SUPT5HO00267 1087 aaKnown RBP17.27■□□□□ 0.36
ITM2A-201ENST00000373298 CACNB1Q02641 598 aaPredicted RBP17.21■□□□□ 0.35
ITM2A-201ENST00000373298 TOP2AP11388 1531 aaKnown RBP17.21■□□□□ 0.35
ITM2A-201ENST00000373298 PPP4R3CPQ6ZMV5 832 aa17.07■□□□□ 0.32
ITM2A-201ENST00000373298 CCDC88BA6NC98 1476 aa17.06■□□□□ 0.32
ITM2A-201ENST00000373298 HOXD11P31277 338 aaPredicted RBP17.05■□□□□ 0.32
ITM2A-201ENST00000373298 NESP48681 1621 aa17.04■□□□□ 0.32
ITM2A-201ENST00000373298 DCAF8L1A6NGE4 600 aa16.98■□□□□ 0.31
ITM2A-201ENST00000373298 CADPSQ9ULU8 1353 aa16.92■□□□□ 0.3
ITM2A-201ENST00000373298 RNF39Q9H2S5 420 aa16.91■□□□□ 0.3
ITM2A-201ENST00000373298 LAMC3Q9Y6N6 1575 aa16.88■□□□□ 0.29
ITM2A-201ENST00000373298 CFTRP13569 1480 aa16.87■□□□□ 0.29
ITM2A-201ENST00000373298 CNKSR2Q8WXI2 1034 aa16.84■□□□□ 0.29
ITM2A-201ENST00000373298 KIF21AQ7Z4S6 1674 aa16.81■□□□□ 0.28
ITM2A-201ENST00000373298 RNF216Q9NWF9 866 aaPredicted RBP16.79■□□□□ 0.28
ITM2A-201ENST00000373298 ERCC6Q03468 1493 aa16.76■□□□□ 0.27
ITM2A-201ENST00000373298 PRDM2Q13029 1718 aa16.75■□□□□ 0.27
ITM2A-201ENST00000373298 PDS5BQ9NTI5 1447 aa16.74■□□□□ 0.27
ITM2A-201ENST00000373298 FANCD2Q9BXW9 1451 aa16.74■□□□□ 0.27
ITM2A-201ENST00000373298 CEP164Q9UPV0 1460 aa16.66■□□□□ 0.26
ITM2A-201ENST00000373298 THOC2Q8NI27 1593 aaKnown RBP16.66■□□□□ 0.26
ITM2A-201ENST00000373298 C1QBPQ07021 282 aaKnown RBP16.63■□□□□ 0.25
ITM2A-201ENST00000373298 URB2Q14146 1524 aaKnown RBP16.61■□□□□ 0.25
ITM2A-201ENST00000373298 MRC2Q9UBG0 1479 aa16.6■□□□□ 0.25
ITM2A-201ENST00000373298 ABCC8Q09428 1581 aa16.56■□□□□ 0.24
ITM2A-201ENST00000373298 WDR62O43379 1518 aa16.55■□□□□ 0.24
ITM2A-201ENST00000373298 CUX1P39880 1505 aa16.51■□□□□ 0.23
ITM2A-201ENST00000373298 TOPBP1Q92547 1522 aa16.51■□□□□ 0.23
ITM2A-201ENST00000373298 DNMBPQ6XZF7 1577 aa16.48■□□□□ 0.23
ITM2A-201ENST00000373298 SYNJ1O43426 1573 aa16.46■□□□□ 0.23
ITM2A-201ENST00000373298 CUX2O14529 1486 aa16.45■□□□□ 0.22
ITM2A-201ENST00000373298 WRNQ14191 1432 aaPredicted RBP eCLIP16.43■□□□□ 0.22
ITM2A-201ENST00000373298 POLA1P09884 1462 aaPredicted RBP16.4■□□□□ 0.22
ITM2A-201ENST00000373298 FGD5Q6ZNL6 1462 aa16.39■□□□□ 0.21
ITM2A-201ENST00000373298 TOP2BQ02880 1626 aa16.38■□□□□ 0.21
ITM2A-201ENST00000373298 RAD54L2Q9Y4B4 1467 aa16.38■□□□□ 0.21
ITM2A-201ENST00000373298 BIVM-ERCC5R4GMW8 1640 aa16.38■□□□□ 0.21
ITM2A-201ENST00000373298 TARBP1Q13395 1621 aaKnown RBP16.33■□□□□ 0.21
ITM2A-201ENST00000373298 ZNF608Q9ULD9 1512 aaPredicted RBP16.32■□□□□ 0.2
ITM2A-201ENST00000373298 SOGA1O94964 1423 aa16.31■□□□□ 0.2
ITM2A-201ENST00000373298 IFT140Q96RY7 1462 aa16.29■□□□□ 0.2
ITM2A-201ENST00000373298 NCBP3Q53F19 620 aaKnown RBP16.27■□□□□ 0.19
ITM2A-201ENST00000373298 WDR97A6NE52 1622 aa16.25■□□□□ 0.19
ITM2A-201ENST00000373298 TDRD9Q8NDG6 1382 aaKnown RBP16.25■□□□□ 0.19
ITM2A-201ENST00000373298 AQRO60306 1485 aaKnown RBP eCLIP16.24■□□□□ 0.19
ITM2A-201ENST00000373298 TRIM41Q8WV44 630 aa16.22■□□□□ 0.19
ITM2A-201ENST00000373298 EIF4G3O43432 1585 aaKnown RBP16.22■□□□□ 0.19
ITM2A-201ENST00000373298 ABCA10Q8WWZ4 1543 aa16.21■□□□□ 0.19
ITM2A-201ENST00000373298 ABCA5Q8WWZ7 1642 aa16.15■□□□□ 0.18
ITM2A-201ENST00000373298 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.15■□□□□ 0.18
ITM2A-201ENST00000373298 RUSC2Q8N2Y8 1516 aa16.14■□□□□ 0.17
ITM2A-201ENST00000373298 GAPVD1Q14C86 1478 aa16.12■□□□□ 0.17
ITM2A-201ENST00000373298 PBRM1Q86U86 1689 aa16.1■□□□□ 0.17
ITM2A-201ENST00000373298 GRIN2BQ13224 1484 aa16.06■□□□□ 0.16
ITM2A-201ENST00000373298 SNAPC4Q5SXM2 1469 aa16.06■□□□□ 0.16
ITM2A-201ENST00000373298 NPM3O75607 178 aaKnown RBP16.05■□□□□ 0.16
ITM2A-201ENST00000373298 KIF27Q86VH2 1401 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms