RNA–Protein interactions for RNA: ENST00000370328.3

GABRE-201, Transcript of gamma-aminobutyric acid type A receptor epsilon subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GABRE, Length 3,152 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABRE-201ENST00000370328 NISCHQ9Y2I1 1504 aa17.7■□□□□ 0.42
GABRE-201ENST00000370328 DCAF8L2P0C7V8 631 aa15.63■□□□□ 0.09
GABRE-201ENST00000370328 ABCC9O60706 1549 aa15.56■□□□□ 0.08
GABRE-201ENST00000370328 CCDC180Q9P1Z9 1646 aa15.29■□□□□ 0.04
GABRE-201ENST00000370328 PABPN1Q86U42 306 aaKnown RBP eCLIP14.81□□□□□ -0.049e-7■■■□□ 14.9
GABRE-201ENST00000370328 SHROOM4Q9ULL8 1493 aa14.81□□□□□ -0.04
GABRE-201ENST00000370328 ZCCHC6Q5VYS8 1495 aaKnown RBP14.71□□□□□ -0.05
GABRE-201ENST00000370328 RB1CC1Q8TDY2 1594 aa14.58□□□□□ -0.07
GABRE-201ENST00000370328 NACADO15069 1562 aa14.52□□□□□ -0.08
GABRE-201ENST00000370328 SCRIBQ14160 1630 aa14.49□□□□□ -0.09
GABRE-201ENST00000370328 DCAF1Q9Y4B6 1507 aa14.33□□□□□ -0.12
GABRE-201ENST00000370328 MYO15BQ96JP2 1530 aa14.27□□□□□ -0.13
GABRE-201ENST00000370328 DNAJC5BQ9UF47 199 aa14.26□□□□□ -0.13
GABRE-201ENST00000370328 BICRAQ9NZM4 1560 aa14.14□□□□□ -0.15
GABRE-201ENST00000370328 UNC13AQ9UPW8 1703 aa14.14□□□□□ -0.15
GABRE-201ENST00000370328 SUPT5HO00267 1087 aaKnown RBP14.08□□□□□ -0.16
GABRE-201ENST00000370328 CECR2Q9BXF3 1484 aa14.02□□□□□ -0.17
GABRE-201ENST00000370328 EIF4G1Q04637 1599 aaKnown RBP13.85□□□□□ -0.19
GABRE-201ENST00000370328 CC2D2AQ9P2K1 1620 aa13.78□□□□□ -0.2
GABRE-201ENST00000370328 MROH2BQ7Z745 1585 aa13.78□□□□□ -0.2
GABRE-201ENST00000370328 RSF1Q96T23 1441 aaPredicted RBP13.7□□□□□ -0.22
GABRE-201ENST00000370328 BAZ1AQ9NRL2 1556 aaPredicted RBP13.67□□□□□ -0.22
GABRE-201ENST00000370328 ATAD2BQ9ULI0 1458 aa13.66□□□□□ -0.22
GABRE-201ENST00000370328 SMARCA4P51532 1647 aa13.64□□□□□ -0.23
GABRE-201ENST00000370328 BAZ1BQ9UIG0 1483 aaKnown RBP13.61□□□□□ -0.23
GABRE-201ENST00000370328 WIZO95785 1651 aa13.61□□□□□ -0.23
GABRE-201ENST00000370328 NCAPD3P42695 1498 aa13.52□□□□□ -0.25
GABRE-201ENST00000370328 SMARCA2P51531 1590 aa13.5□□□□□ -0.25
GABRE-201ENST00000370328 NESP48681 1621 aa13.47□□□□□ -0.25
GABRE-201ENST00000370328 ERCC6Q03468 1493 aa13.36□□□□□ -0.27
GABRE-201ENST00000370328 CCDC88BA6NC98 1476 aa13.36□□□□□ -0.27
GABRE-201ENST00000370328 PELP1Q8IZL8 1130 aaKnown RBP13.34□□□□□ -0.27
GABRE-201ENST00000370328 HMGXB3Q12766 1538 aa13.33□□□□□ -0.28
GABRE-201ENST00000370328 TOP2AP11388 1531 aaKnown RBP13.31□□□□□ -0.28
GABRE-201ENST00000370328 CADPSQ9ULU8 1353 aa13.3□□□□□ -0.28
GABRE-201ENST00000370328 PEG3Q9GZU2 1588 aa13.3□□□□□ -0.28
GABRE-201ENST00000370328 EHMT2Q96KQ7 1210 aa13.21□□□□□ -0.3
GABRE-201ENST00000370328 MYT1Q01538 1121 aa13.18□□□□□ -0.3
GABRE-201ENST00000370328 PDS5BQ9NTI5 1447 aa13.18□□□□□ -0.3
GABRE-201ENST00000370328 FANCD2Q9BXW9 1451 aa13.16□□□□□ -0.3
GABRE-201ENST00000370328 CFTRP13569 1480 aa13.13□□□□□ -0.31
GABRE-201ENST00000370328 FAM9AQ8IZU1 332 aaPredicted RBP13.13□□□□□ -0.31
GABRE-201ENST00000370328 TRIM41Q8WV44 630 aa13.08□□□□□ -0.32
GABRE-201ENST00000370328 CEP164Q9UPV0 1460 aa13.08□□□□□ -0.32
GABRE-201ENST00000370328 FBLN2P98095 1184 aa13.08□□□□□ -0.32
GABRE-201ENST00000370328 LAMC3Q9Y6N6 1575 aa13.05□□□□□ -0.32
GABRE-201ENST00000370328 ABCC8Q09428 1581 aa13.04□□□□□ -0.32
GABRE-201ENST00000370328 SLC24A1O60721 1099 aa13.04□□□□□ -0.32
GABRE-201ENST00000370328 PRKCSHP14314 528 aaPredicted RBP13.02□□□□□ -0.32
GABRE-201ENST00000370328 KIF21AQ7Z4S6 1674 aa13□□□□□ -0.33
GABRE-201ENST00000370328 TDRD9Q8NDG6 1382 aaKnown RBP12.99□□□□□ -0.33
GABRE-201ENST00000370328 URB2Q14146 1524 aaKnown RBP12.97□□□□□ -0.33
GABRE-201ENST00000370328 MRC2Q9UBG0 1479 aa12.96□□□□□ -0.33
GABRE-201ENST00000370328 RAD54L2Q9Y4B4 1467 aa12.95□□□□□ -0.34
GABRE-201ENST00000370328 WRNQ14191 1432 aaPredicted RBP eCLIP12.95□□□□□ -0.34
GABRE-201ENST00000370328 RANGAP1P46060 587 aaPredicted RBP12.94□□□□□ -0.34
GABRE-201ENST00000370328 CHIC1Q5VXU3 224 aa12.94□□□□□ -0.34
GABRE-201ENST00000370328 AQRO60306 1485 aaKnown RBP eCLIP12.9□□□□□ -0.342e-7■■■□□ 18.5
GABRE-201ENST00000370328 TOPBP1Q92547 1522 aa12.9□□□□□ -0.34
GABRE-201ENST00000370328 SOGA1O94964 1423 aa12.9□□□□□ -0.34
GABRE-201ENST00000370328 TTBK1Q5TCY1 1321 aaPredicted RBP12.88□□□□□ -0.35
GABRE-201ENST00000370328 ZNF608Q9ULD9 1512 aaPredicted RBP12.88□□□□□ -0.35
GABRE-201ENST00000370328 FGD5Q6ZNL6 1462 aa12.87□□□□□ -0.35
GABRE-201ENST00000370328 CUX1P39880 1505 aa12.86□□□□□ -0.35
GABRE-201ENST00000370328 POLA1P09884 1462 aaPredicted RBP12.85□□□□□ -0.35
GABRE-201ENST00000370328 THOC2Q8NI27 1593 aaKnown RBP12.83□□□□□ -0.36
GABRE-201ENST00000370328 CUX2O14529 1486 aa12.82□□□□□ -0.36
GABRE-201ENST00000370328 CHMP7Q8WUX9 453 aaPredicted RBP12.82□□□□□ -0.36
GABRE-201ENST00000370328 SYNJ1O43426 1573 aa12.81□□□□□ -0.36
GABRE-201ENST00000370328 WDR62O43379 1518 aa12.79□□□□□ -0.36
GABRE-201ENST00000370328 DNMBPQ6XZF7 1577 aa12.77□□□□□ -0.37
GABRE-201ENST00000370328 RUSC2Q8N2Y8 1516 aa12.75□□□□□ -0.37
GABRE-201ENST00000370328 IFT140Q96RY7 1462 aa12.72□□□□□ -0.37
GABRE-201ENST00000370328 OSCARQ8IYS5 282 aa12.7□□□□□ -0.38
GABRE-201ENST00000370328 UBTFP17480 764 aaKnown RBP12.69□□□□□ -0.38
GABRE-201ENST00000370328 LOC105371045A0A1W2PR82 267 aa12.69□□□□□ -0.38
GABRE-201ENST00000370328 GAPVD1Q14C86 1478 aa12.68□□□□□ -0.38
GABRE-201ENST00000370328 CSRNP3Q8WYN3 585 aa12.66□□□□□ -0.38
GABRE-201ENST00000370328 TOP2BQ02880 1626 aa12.65□□□□□ -0.38
GABRE-201ENST00000370328 P3H3Q8IVL6 736 aa12.65□□□□□ -0.38
GABRE-201ENST00000370328 PRDM2Q13029 1718 aa12.64□□□□□ -0.39
GABRE-201ENST00000370328 KIF27Q86VH2 1401 aa12.64□□□□□ -0.39
GABRE-201ENST00000370328 SNAPC4Q5SXM2 1469 aa12.64□□□□□ -0.39
GABRE-201ENST00000370328 IGF1RP08069 1367 aa12.62□□□□□ -0.39
GABRE-201ENST00000370328 ARID3CA6NKF2 412 aa12.61□□□□□ -0.39
GABRE-201ENST00000370328 CYB5RLQ6IPT4 315 aa12.61□□□□□ -0.39
GABRE-201ENST00000370328 EIF4G3O43432 1585 aaKnown RBP12.6□□□□□ -0.39
GABRE-201ENST00000370328 TARBP1Q13395 1621 aaKnown RBP12.59□□□□□ -0.39
GABRE-201ENST00000370328 ABCA10Q8WWZ4 1543 aa12.59□□□□□ -0.39
GABRE-201ENST00000370328 CARMIL1Q5VZK9 1371 aa12.59□□□□□ -0.39
GABRE-201ENST00000370328 GRIN2BQ13224 1484 aa12.58□□□□□ -0.4
GABRE-201ENST00000370328 DNAJC5Q9H3Z4 198 aa12.57□□□□□ -0.4
GABRE-201ENST00000370328 ATP1B4Q9UN42 357 aaPredicted RBP12.57□□□□□ -0.4
GABRE-201ENST00000370328 ERICH6Q7L0X2 663 aa12.53□□□□□ -0.4
GABRE-201ENST00000370328 BIVM-ERCC5R4GMW8 1640 aa12.53□□□□□ -0.4
GABRE-201ENST00000370328 JPH4Q96JJ6 628 aa12.51□□□□□ -0.41
GABRE-201ENST00000370328 APLP2Q06481 763 aa12.48□□□□□ -0.41
GABRE-201ENST00000370328 FHAD1B1AJZ9 1412 aa12.47□□□□□ -0.41
GABRE-201ENST00000370328 SYNJ2O15056 1496 aa12.46□□□□□ -0.41
GABRE-201ENST00000370328 RAPGEF2Q9Y4G8 1499 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms