RNA–Protein interactions for RNA: ENST00000368273.8

PMF1-201, Transcript of polyamine modulated factor 1, humanhuman

TSL 2 BASIC

Gene PMF1, Length 884 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMF1-201ENST00000368273 NISCHQ9Y2I1 1504 aa31.59■■■□□ 2.65
PMF1-201ENST00000368273 CCDC180Q9P1Z9 1646 aa28.09■■■□□ 2.09
PMF1-201ENST00000368273 ABCC9O60706 1549 aa27.48■■□□□ 1.99
PMF1-201ENST00000368273 RB1CC1Q8TDY2 1594 aa26.44■■□□□ 1.82
PMF1-201ENST00000368273 NACADO15069 1562 aa26.41■■□□□ 1.82
PMF1-201ENST00000368273 DCAF8L2P0C7V8 631 aa26.39■■□□□ 1.82
PMF1-201ENST00000368273 ZCCHC6Q5VYS8 1495 aaKnown RBP26.3■■□□□ 1.8
PMF1-201ENST00000368273 MYO15BQ96JP2 1530 aa26.27■■□□□ 1.8
PMF1-201ENST00000368273 DCAF1Q9Y4B6 1507 aa26.14■■□□□ 1.78
PMF1-201ENST00000368273 UNC13AQ9UPW8 1703 aa25.83■■□□□ 1.73
PMF1-201ENST00000368273 PABPN1Q86U42 306 aaKnown RBP eCLIP25.69■■□□□ 1.7
PMF1-201ENST00000368273 BICRAQ9NZM4 1560 aa25.65■■□□□ 1.7
PMF1-201ENST00000368273 SCRIBQ14160 1630 aa25.61■■□□□ 1.69
PMF1-201ENST00000368273 SHROOM4Q9ULL8 1493 aa25.38■■□□□ 1.65
PMF1-201ENST00000368273 DNAJC5BQ9UF47 199 aa25.26■■□□□ 1.63
PMF1-201ENST00000368273 EIF4G1Q04637 1599 aaKnown RBP24.96■■□□□ 1.59
PMF1-201ENST00000368273 CC2D2AQ9P2K1 1620 aa24.86■■□□□ 1.57
PMF1-201ENST00000368273 CECR2Q9BXF3 1484 aa24.7■■□□□ 1.55
PMF1-201ENST00000368273 SMARCA4P51532 1647 aa24.5■■□□□ 1.51
PMF1-201ENST00000368273 BAZ1AQ9NRL2 1556 aaPredicted RBP24.48■■□□□ 1.51
PMF1-201ENST00000368273 ATAD2BQ9ULI0 1458 aa24.38■■□□□ 1.49
PMF1-201ENST00000368273 NCAPD3P42695 1498 aa24.38■■□□□ 1.49
PMF1-201ENST00000368273 SMARCA2P51531 1590 aa24.35■■□□□ 1.49
PMF1-201ENST00000368273 MROH2BQ7Z745 1585 aa24.34■■□□□ 1.49
PMF1-201ENST00000368273 PEG3Q9GZU2 1588 aa24.28■■□□□ 1.48
PMF1-201ENST00000368273 HMGXB3Q12766 1538 aa24.25■■□□□ 1.47
PMF1-201ENST00000368273 BAZ1BQ9UIG0 1483 aaKnown RBP24.18■■□□□ 1.46
PMF1-201ENST00000368273 WIZO95785 1651 aa24.07■■□□□ 1.44
PMF1-201ENST00000368273 RSF1Q96T23 1441 aaPredicted RBP24.06■■□□□ 1.44
PMF1-201ENST00000368273 TOP2AP11388 1531 aaKnown RBP23.82■■□□□ 1.4
PMF1-201ENST00000368273 NESP48681 1621 aa23.78■■□□□ 1.4
PMF1-201ENST00000368273 LAMC3Q9Y6N6 1575 aa23.73■■□□□ 1.39
PMF1-201ENST00000368273 ERCC6Q03468 1493 aa23.68■■□□□ 1.38
PMF1-201ENST00000368273 CADPSQ9ULU8 1353 aa23.66■■□□□ 1.38
PMF1-201ENST00000368273 PDS5BQ9NTI5 1447 aa23.58■■□□□ 1.36
PMF1-201ENST00000368273 CCDC88BA6NC98 1476 aa23.55■■□□□ 1.36
PMF1-201ENST00000368273 CFTRP13569 1480 aa23.52■■□□□ 1.36
PMF1-201ENST00000368273 KIF21AQ7Z4S6 1674 aa23.5■■□□□ 1.35
PMF1-201ENST00000368273 CUX2O14529 1486 aa23.45■■□□□ 1.34
PMF1-201ENST00000368273 SUPT5HO00267 1087 aaKnown RBP23.43■■□□□ 1.34
PMF1-201ENST00000368273 THOC2Q8NI27 1593 aaKnown RBP23.42■■□□□ 1.34
PMF1-201ENST00000368273 FANCD2Q9BXW9 1451 aa23.38■■□□□ 1.33
PMF1-201ENST00000368273 CEP164Q9UPV0 1460 aa23.35■■□□□ 1.33
PMF1-201ENST00000368273 PRDM2Q13029 1718 aa23.33■■□□□ 1.32
PMF1-201ENST00000368273 MRC2Q9UBG0 1479 aa23.32■■□□□ 1.32
PMF1-201ENST00000368273 WDR62O43379 1518 aa23.25■■□□□ 1.31
PMF1-201ENST00000368273 URB2Q14146 1524 aaKnown RBP23.16■■□□□ 1.3
PMF1-201ENST00000368273 ABCC8Q09428 1581 aa23.02■■□□□ 1.28
PMF1-201ENST00000368273 TOPBP1Q92547 1522 aa23.01■■□□□ 1.27
PMF1-201ENST00000368273 DNMBPQ6XZF7 1577 aa22.98■■□□□ 1.27
PMF1-201ENST00000368273 IFT140Q96RY7 1462 aa22.87■■□□□ 1.25
PMF1-201ENST00000368273 CUX1P39880 1505 aa22.83■■□□□ 1.25
PMF1-201ENST00000368273 POLA1P09884 1462 aaPredicted RBP22.81■■□□□ 1.24
PMF1-201ENST00000368273 DNAJC5Q9H3Z4 198 aa22.77■■□□□ 1.24
PMF1-201ENST00000368273 ZNF608Q9ULD9 1512 aaPredicted RBP22.77■■□□□ 1.24
PMF1-201ENST00000368273 TARBP1Q13395 1621 aaKnown RBP22.76■■□□□ 1.23
PMF1-201ENST00000368273 FGD5Q6ZNL6 1462 aa22.76■■□□□ 1.23
PMF1-201ENST00000368273 SOGA1O94964 1423 aa22.73■■□□□ 1.23
PMF1-201ENST00000368273 RAD54L2Q9Y4B4 1467 aa22.72■■□□□ 1.23
PMF1-201ENST00000368273 WRNQ14191 1432 aaPredicted RBP eCLIP22.68■■□□□ 1.22
PMF1-201ENST00000368273 EIF4G3O43432 1585 aaKnown RBP22.67■■□□□ 1.22
PMF1-201ENST00000368273 AQRO60306 1485 aaKnown RBP eCLIP22.65■■□□□ 1.229e-8■■■■■ 32
PMF1-201ENST00000368273 TOP2BQ02880 1626 aa22.64■■□□□ 1.21
PMF1-201ENST00000368273 BIVM-ERCC5R4GMW8 1640 aa22.63■■□□□ 1.21
PMF1-201ENST00000368273 SYNJ1O43426 1573 aa22.63■■□□□ 1.21
PMF1-201ENST00000368273 TDRD9Q8NDG6 1382 aaKnown RBP22.6■■□□□ 1.21
PMF1-201ENST00000368273 WDR97A6NE52 1622 aa22.58■■□□□ 1.21
PMF1-201ENST00000368273 ABCA10Q8WWZ4 1543 aa22.55■■□□□ 1.2
PMF1-201ENST00000368273 OSCARQ8IYS5 282 aa22.5■■□□□ 1.19
PMF1-201ENST00000368273 GRIN2BQ13224 1484 aa22.46■■□□□ 1.19
PMF1-201ENST00000368273 GAPVD1Q14C86 1478 aa22.46■■□□□ 1.19
PMF1-201ENST00000368273 ABCA5Q8WWZ7 1642 aa22.45■■□□□ 1.18
PMF1-201ENST00000368273 SNAPC4Q5SXM2 1469 aa22.42■■□□□ 1.18
PMF1-201ENST00000368273 MAGI1Q96QZ7 1491 aaPredicted RBP22.41■■□□□ 1.18
PMF1-201ENST00000368273 PBRM1Q86U86 1689 aa22.4■■□□□ 1.18
PMF1-201ENST00000368273 CHD1O14646 1710 aa22.39■■□□□ 1.17
PMF1-201ENST00000368273 FBLN2P98095 1184 aa22.37■■□□□ 1.17
PMF1-201ENST00000368273 CHIC1Q5VXU3 224 aa22.35■■□□□ 1.17
PMF1-201ENST00000368273 SYNJ2O15056 1496 aa22.31■■□□□ 1.16
PMF1-201ENST00000368273 CHMP7Q8WUX9 453 aaPredicted RBP22.31■■□□□ 1.16
PMF1-201ENST00000368273 ERICH3Q5RHP9 1530 aa22.27■■□□□ 1.16
PMF1-201ENST00000368273 ADAMTS12P58397 1594 aa22.23■■□□□ 1.15
PMF1-201ENST00000368273 KIF27Q86VH2 1401 aa22.22■■□□□ 1.15
PMF1-201ENST00000368273 FHAD1B1AJZ9 1412 aa22.21■■□□□ 1.15
PMF1-201ENST00000368273 GRIN2AQ12879 1464 aa22.16■■□□□ 1.14
PMF1-201ENST00000368273 CLASP1Q7Z460 1538 aa22.16■■□□□ 1.14
PMF1-201ENST00000368273 TRIM41Q8WV44 630 aa22.14■■□□□ 1.13
PMF1-201ENST00000368273 IGF1RP08069 1367 aa22.13■■□□□ 1.13
PMF1-201ENST00000368273 RIMBP3CA6NJZ7 1639 aa22.12■■□□□ 1.13
PMF1-201ENST00000368273 RIMBP3BA6NNM3 1639 aa22.12■■□□□ 1.13
PMF1-201ENST00000368273 RIMBP3Q9UFD9 1639 aa22.12■■□□□ 1.13
PMF1-201ENST00000368273 ARHGEF11O15085 1522 aa22.11■■□□□ 1.13
PMF1-201ENST00000368273 NUP160Q12769 1436 aa22.07■■□□□ 1.12
PMF1-201ENST00000368273 CUL7Q14999 1698 aa22.06■■□□□ 1.12
PMF1-201ENST00000368273 CEP170Q5SW79 1584 aa22.05■■□□□ 1.12
PMF1-201ENST00000368273 RUSC2Q8N2Y8 1516 aa22.01■■□□□ 1.11
PMF1-201ENST00000368273 CARMIL1Q5VZK9 1371 aa21.99■■□□□ 1.11
PMF1-201ENST00000368273 ARAP1Q96P48 1450 aa21.93■■□□□ 1.1
PMF1-201ENST00000368273 SHROOM2Q13796 1616 aa21.91■■□□□ 1.1
PMF1-201ENST00000368273 CYB5RLQ6IPT4 315 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms