RNA–Protein interactions for RNA: ENST00000367621.1

VTA1-201, Transcript of vesicle trafficking 1, humanhuman

TSL 5 BASIC

Gene VTA1, Length 1,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-201ENST00000367621 AEBP2Q6ZN18 517 aaPredicted RBP27.95■■■□□ 2.06
VTA1-201ENST00000367621 CHIC1Q5VXU3 224 aa26.31■■□□□ 1.8
VTA1-201ENST00000367621 SENP3Q9H4L4 574 aaPredicted RBP23.93■■□□□ 1.42
VTA1-201ENST00000367621 PHF23Q9BUL5 403 aaPredicted RBP23.55■■□□□ 1.36
VTA1-201ENST00000367621 FOXD1Q16676 465 aa22.31■■□□□ 1.16
VTA1-201ENST00000367621 NISCHQ9Y2I1 1504 aa21.91■■□□□ 1.1
VTA1-201ENST00000367621 MSH5O43196 834 aa21.03■□□□□ 0.96
VTA1-201ENST00000367621 POTEDQ86YR6 584 aa20.95■□□□□ 0.94
VTA1-201ENST00000367621 PLPPR3Q6T4P5 718 aa20.9■□□□□ 0.94
VTA1-201ENST00000367621 PIAS4Q8N2W9 510 aaPredicted RBP20.74■□□□□ 0.91
VTA1-201ENST00000367621 PPP6R1Q9UPN7 881 aa20.63■□□□□ 0.89
VTA1-201ENST00000367621 ADRA2BP18089 450 aa20.51■□□□□ 0.87
VTA1-201ENST00000367621 CCDC180Q9P1Z9 1646 aa19.06■□□□□ 0.64
VTA1-201ENST00000367621 DMRT2Q9Y5R5 561 aa18.94■□□□□ 0.62
VTA1-201ENST00000367621 MAPK8IP2Q13387 824 aaPredicted RBP18.92■□□□□ 0.62
VTA1-201ENST00000367621 SCAF1Q9H7N4 1312 aaKnown RBP18.87■□□□□ 0.61
VTA1-201ENST00000367621 ZCCHC6Q5VYS8 1495 aaKnown RBP18.38■□□□□ 0.53
VTA1-201ENST00000367621 PPP4R3CPQ6ZMV5 832 aa18.25■□□□□ 0.51
VTA1-201ENST00000367621 ABCC9O60706 1549 aa18.22■□□□□ 0.51
VTA1-201ENST00000367621 HOXD11P31277 338 aaPredicted RBP18.16■□□□□ 0.5
VTA1-201ENST00000367621 CACNB1Q02641 598 aaPredicted RBP18.15■□□□□ 0.5
VTA1-201ENST00000367621 DCAF1Q9Y4B6 1507 aa18.13■□□□□ 0.49
VTA1-201ENST00000367621 DCAF8L2P0C7V8 631 aa18.08■□□□□ 0.48
VTA1-201ENST00000367621 DCAF8L1A6NGE4 600 aa18.03■□□□□ 0.48
VTA1-201ENST00000367621 CNKSR2Q8WXI2 1034 aa18.01■□□□□ 0.47
VTA1-201ENST00000367621 MYO15BQ96JP2 1530 aa17.97■□□□□ 0.47
VTA1-201ENST00000367621 RNF216Q9NWF9 866 aaPredicted RBP17.93■□□□□ 0.46
VTA1-201ENST00000367621 RNF39Q9H2S5 420 aa17.92■□□□□ 0.46
VTA1-201ENST00000367621 NACADO15069 1562 aa17.85■□□□□ 0.45
VTA1-201ENST00000367621 SHROOM4Q9ULL8 1493 aa17.74■□□□□ 0.43
VTA1-201ENST00000367621 DNAJC5BQ9UF47 199 aa17.7■□□□□ 0.42
VTA1-201ENST00000367621 RB1CC1Q8TDY2 1594 aa17.69■□□□□ 0.42
VTA1-201ENST00000367621 C1QBPQ07021 282 aaKnown RBP17.66■□□□□ 0.42
VTA1-201ENST00000367621 SCRIBQ14160 1630 aa17.53■□□□□ 0.4
VTA1-201ENST00000367621 NCBP3Q53F19 620 aaKnown RBP17.5■□□□□ 0.39
VTA1-201ENST00000367621 UNC13AQ9UPW8 1703 aa17.24■□□□□ 0.35
VTA1-201ENST00000367621 BICRAQ9NZM4 1560 aa17.24■□□□□ 0.35
VTA1-201ENST00000367621 NPM3O75607 178 aaKnown RBP17.21■□□□□ 0.35
VTA1-201ENST00000367621 PABPN1Q86U42 306 aaKnown RBP eCLIP17.21■□□□□ 0.35
VTA1-201ENST00000367621 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.21■□□□□ 0.351e-6■■□□□ 12.9
VTA1-201ENST00000367621 CECR2Q9BXF3 1484 aa17.07■□□□□ 0.32
VTA1-201ENST00000367621 SUPT5HO00267 1087 aaKnown RBP17■□□□□ 0.31
VTA1-201ENST00000367621 RSF1Q96T23 1441 aaPredicted RBP16.98■□□□□ 0.31
VTA1-201ENST00000367621 MROH2BQ7Z745 1585 aa16.93■□□□□ 0.3
VTA1-201ENST00000367621 BAZ1AQ9NRL2 1556 aaPredicted RBP16.88■□□□□ 0.29
VTA1-201ENST00000367621 U3KPZ7 1027 aaPredicted RBP16.84■□□□□ 0.29
VTA1-201ENST00000367621 SMARCA4P51532 1647 aa16.82■□□□□ 0.28
VTA1-201ENST00000367621 WIZO95785 1651 aa16.71■□□□□ 0.27
VTA1-201ENST00000367621 EIF4G1Q04637 1599 aaKnown RBP16.68■□□□□ 0.26
VTA1-201ENST00000367621 DSG3P32926 999 aa16.66■□□□□ 0.26
VTA1-201ENST00000367621 PEG3Q9GZU2 1588 aa16.66■□□□□ 0.26
VTA1-201ENST00000367621 SPINK5Q9NQ38 1064 aaPredicted RBP16.65■□□□□ 0.26
VTA1-201ENST00000367621 ATAD2BQ9ULI0 1458 aa16.65■□□□□ 0.26
VTA1-201ENST00000367621 CAPN15O75808 1086 aa16.62■□□□□ 0.25
VTA1-201ENST00000367621 KCNA4P22459 653 aa16.6■□□□□ 0.25
VTA1-201ENST00000367621 TOP2AP11388 1531 aaKnown RBP16.57■□□□□ 0.24
VTA1-201ENST00000367621 SMARCA2P51531 1590 aa16.56■□□□□ 0.24
VTA1-201ENST00000367621 NCAPD3P42695 1498 aa16.54■□□□□ 0.24
VTA1-201ENST00000367621 SLC4A2P04920 1241 aa16.52■□□□□ 0.24
VTA1-201ENST00000367621 BAZ1BQ9UIG0 1483 aaKnown RBP16.48■□□□□ 0.23
VTA1-201ENST00000367621 CC2D2AQ9P2K1 1620 aa16.45■□□□□ 0.22
VTA1-201ENST00000367621 HMGXB3Q12766 1538 aa16.45■□□□□ 0.22
VTA1-201ENST00000367621 CCDC88BA6NC98 1476 aa16.44■□□□□ 0.22
VTA1-201ENST00000367621 APLP2Q06481 763 aa16.4■□□□□ 0.22
VTA1-201ENST00000367621 POTEHQ6S545 545 aa16.37■□□□□ 0.21
VTA1-201ENST00000367621 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.33■□□□□ 0.2
VTA1-201ENST00000367621 HNRNPUL2Q1KMD3 747 aaKnown RBP16.33■□□□□ 0.2
VTA1-201ENST00000367621 ZNF219Q9P2Y4 722 aaPredicted RBP16.33■□□□□ 0.2
VTA1-201ENST00000367621 TRHP20396 242 aaPredicted RBP16.27■□□□□ 0.2
VTA1-201ENST00000367621 SAMD1Q6SPF0 538 aaPredicted RBP16.21■□□□□ 0.19
VTA1-201ENST00000367621 ABCB7O75027 752 aa16.18■□□□□ 0.18
VTA1-201ENST00000367621 CFTRP13569 1480 aa16.13■□□□□ 0.17
VTA1-201ENST00000367621 CADPSQ9ULU8 1353 aa16.1■□□□□ 0.17
VTA1-201ENST00000367621 TRIM41Q8WV44 630 aa15.99■□□□□ 0.15
VTA1-201ENST00000367621 ABCC8Q09428 1581 aa15.99■□□□□ 0.15
VTA1-201ENST00000367621 NESP48681 1621 aa15.98■□□□□ 0.15
VTA1-201ENST00000367621 MYCNP04198 464 aaPredicted RBP15.95■□□□□ 0.14
VTA1-201ENST00000367621 WRNQ14191 1432 aaPredicted RBP eCLIP15.94■□□□□ 0.14
VTA1-201ENST00000367621 RBM42Q9BTD8 480 aaKnown RBP15.93■□□□□ 0.14
VTA1-201ENST00000367621 LAMC3Q9Y6N6 1575 aa15.9■□□□□ 0.14
VTA1-201ENST00000367621 FANCD2Q9BXW9 1451 aa15.88■□□□□ 0.13
VTA1-201ENST00000367621 SYNJ1O43426 1573 aa15.86■□□□□ 0.13
VTA1-201ENST00000367621 PDS5BQ9NTI5 1447 aa15.83■□□□□ 0.12
VTA1-201ENST00000367621 CUX1P39880 1505 aa15.83■□□□□ 0.12
VTA1-201ENST00000367621 POLA2Q14181 598 aa15.82■□□□□ 0.12
VTA1-201ENST00000367621 PRDM2Q13029 1718 aa15.82■□□□□ 0.12
VTA1-201ENST00000367621 TOP2BQ02880 1626 aa15.79■□□□□ 0.12
VTA1-201ENST00000367621 CEP164Q9UPV0 1460 aa15.76■□□□□ 0.11
VTA1-201ENST00000367621 BIVM-ERCC5R4GMW8 1640 aa15.76■□□□□ 0.11
VTA1-201ENST00000367621 SOGA1O94964 1423 aa15.73■□□□□ 0.11
VTA1-201ENST00000367621 URB2Q14146 1524 aaKnown RBP15.72■□□□□ 0.11
VTA1-201ENST00000367621 TOPBP1Q92547 1522 aa15.7■□□□□ 0.1
VTA1-201ENST00000367621 FAM9AQ8IZU1 332 aaPredicted RBP15.7■□□□□ 0.1
VTA1-201ENST00000367621 RUSC2Q8N2Y8 1516 aa15.68■□□□□ 0.1
VTA1-201ENST00000367621 DNMBPQ6XZF7 1577 aa15.68■□□□□ 0.1
VTA1-201ENST00000367621 KIF21AQ7Z4S6 1674 aa15.67■□□□□ 0.1
VTA1-201ENST00000367621 CHRDL2Q6WN34 429 aa15.66■□□□□ 0.1
VTA1-201ENST00000367621 FGD5Q6ZNL6 1462 aa15.65■□□□□ 0.1
VTA1-201ENST00000367621 LOC105371045A0A1W2PR82 267 aa15.64■□□□□ 0.09
VTA1-201ENST00000367621 MRC2Q9UBG0 1479 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms