RNA–Protein interactions for RNA: ENST00000366898.5

PRKN-206, Transcript of parkin RBR E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRKN, Length 4,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKN-206ENST00000366898 NISCHQ9Y2I1 1504 aa21.61■■□□□ 1.05
PRKN-206ENST00000366898 DCAF8L2P0C7V8 631 aa19.86■□□□□ 0.77
PRKN-206ENST00000366898 SHROOM4Q9ULL8 1493 aa19.71■□□□□ 0.75
PRKN-206ENST00000366898 PELP1Q8IZL8 1130 aaKnown RBP19.6■□□□□ 0.73
PRKN-206ENST00000366898 SUPT5HO00267 1087 aaKnown RBP19.51■□□□□ 0.71
PRKN-206ENST00000366898 MYT1Q01538 1121 aa19.25■□□□□ 0.67
PRKN-206ENST00000366898 PCGF6Q9BYE7 350 aa18.86■□□□□ 0.61
PRKN-206ENST00000366898 HRCP23327 699 aa18.54■□□□□ 0.56
PRKN-206ENST00000366898 EHMT2Q96KQ7 1210 aa18.49■□□□□ 0.55
PRKN-206ENST00000366898 PPARGC1BQ86YN6 1023 aaKnown RBP18.47■□□□□ 0.55
PRKN-206ENST00000366898 CENPBP07199 599 aaPredicted RBP18.42■□□□□ 0.54
PRKN-206ENST00000366898 ABCC9O60706 1549 aa18.38■□□□□ 0.53
PRKN-206ENST00000366898 FAM9AQ8IZU1 332 aaPredicted RBP18.24■□□□□ 0.51
PRKN-206ENST00000366898 CHIC1Q5VXU3 224 aa18.22■□□□□ 0.51
PRKN-206ENST00000366898 CCDC180Q9P1Z9 1646 aa18.14■□□□□ 0.49
PRKN-206ENST00000366898 YTHDC1Q96MU7 727 aaKnown RBP18.13■□□□□ 0.49
PRKN-206ENST00000366898 ZCCHC6Q5VYS8 1495 aaKnown RBP18.1■□□□□ 0.49
PRKN-206ENST00000366898 LOC105371045A0A1W2PR82 267 aa18.08■□□□□ 0.48
PRKN-206ENST00000366898 ERICH6Q7L0X2 663 aa18.07■□□□□ 0.48
PRKN-206ENST00000366898 ZEB1P37275 1124 aaPredicted RBP18■□□□□ 0.47
PRKN-206ENST00000366898 TRIM41Q8WV44 630 aa17.95■□□□□ 0.46
PRKN-206ENST00000366898 GTF3C3Q9Y5Q9 886 aa17.88■□□□□ 0.45
PRKN-206ENST00000366898 TTBK1Q5TCY1 1321 aaPredicted RBP17.82■□□□□ 0.44
PRKN-206ENST00000366898 CCER1Q8TC90 406 aaPredicted RBP17.76■□□□□ 0.43
PRKN-206ENST00000366898 SCAF1Q9H7N4 1312 aaKnown RBP17.74■□□□□ 0.43
PRKN-206ENST00000366898 MYO15BQ96JP2 1530 aa17.71■□□□□ 0.43
PRKN-206ENST00000366898 SCRIBQ14160 1630 aa17.58■□□□□ 0.41
PRKN-206ENST00000366898 ACIN1Q9UKV3 1341 aaKnown RBP17.57■□□□□ 0.4
PRKN-206ENST00000366898 TRIM26Q12899 539 aaPredicted RBP17.56■□□□□ 0.4
PRKN-206ENST00000366898 PABPN1Q86U42 306 aaKnown RBP eCLIP17.53■□□□□ 0.4
PRKN-206ENST00000366898 RANGAP1P46060 587 aaPredicted RBP17.51■□□□□ 0.39
PRKN-206ENST00000366898 NEFLP07196 543 aa17.42■□□□□ 0.38
PRKN-206ENST00000366898 DIEXFQ68CQ4 756 aaKnown RBP17.42■□□□□ 0.38
PRKN-206ENST00000366898 BCL11AQ9H165 835 aa17.4■□□□□ 0.38
PRKN-206ENST00000366898 NEUROD1Q13562 356 aa17.38■□□□□ 0.37
PRKN-206ENST00000366898 UBTFP17480 764 aaKnown RBP17.37■□□□□ 0.37
PRKN-206ENST00000366898 DCAF1Q9Y4B6 1507 aa17.34■□□□□ 0.37
PRKN-206ENST00000366898 RSF1Q96T23 1441 aaPredicted RBP17.29■□□□□ 0.36
PRKN-206ENST00000366898 RB1CC1Q8TDY2 1594 aa17.27■□□□□ 0.35
PRKN-206ENST00000366898 BCANQ96GW7 911 aa17.24■□□□□ 0.35
PRKN-206ENST00000366898 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.17■□□□□ 0.34
PRKN-206ENST00000366898 APLP2Q06481 763 aa17.16■□□□□ 0.34
PRKN-206ENST00000366898 EIF5BO60841 1220 aaKnown RBP17.15■□□□□ 0.34
PRKN-206ENST00000366898 CECR2Q9BXF3 1484 aa17.14■□□□□ 0.33
PRKN-206ENST00000366898 NACADO15069 1562 aa17.1■□□□□ 0.33
PRKN-206ENST00000366898 RTL5Q5HYW3 569 aaPredicted RBP17.08■□□□□ 0.32
PRKN-206ENST00000366898 ANP32EQ9BTT0 268 aa17.03■□□□□ 0.32
PRKN-206ENST00000366898 HNRNPUL2Q1KMD3 747 aaKnown RBP16.97■□□□□ 0.31
PRKN-206ENST00000366898 MROH2BQ7Z745 1585 aa16.93■□□□□ 0.3
PRKN-206ENST00000366898 ATP1B4Q9UN42 357 aaPredicted RBP16.89■□□□□ 0.29
PRKN-206ENST00000366898 CSRNP3Q8WYN3 585 aa16.85■□□□□ 0.29
PRKN-206ENST00000366898 ITGAEP38570 1179 aa16.8■□□□□ 0.28
PRKN-206ENST00000366898 PRKCSHP14314 528 aaPredicted RBP16.79■□□□□ 0.28
PRKN-206ENST00000366898 WIZO95785 1651 aa16.78■□□□□ 0.28
PRKN-206ENST00000366898 DAXXQ9UER7 740 aaPredicted RBP16.73■□□□□ 0.27
PRKN-206ENST00000366898 NBR1Q14596 966 aa16.71■□□□□ 0.27
PRKN-206ENST00000366898 ZNF316A6NFI3 1004 aaPredicted RBP16.71■□□□□ 0.27
PRKN-206ENST00000366898 CDK11AQ9UQ88 783 aaPredicted RBP16.7■□□□□ 0.26
PRKN-206ENST00000366898 ABCC8Q09428 1581 aa16.67■□□□□ 0.26
PRKN-206ENST00000366898 RTN4Q9NQC3 1192 aaKnown RBP16.67■□□□□ 0.26
PRKN-206ENST00000366898 BAZ1AQ9NRL2 1556 aaPredicted RBP16.66■□□□□ 0.26
PRKN-206ENST00000366898 FKBP8Q14318 412 aa16.65■□□□□ 0.26
PRKN-206ENST00000366898 SOGA1O94964 1423 aa16.64■□□□□ 0.25
PRKN-206ENST00000366898 DNAJC5BQ9UF47 199 aa16.62■□□□□ 0.25
PRKN-206ENST00000366898 CCDC88BA6NC98 1476 aa16.6■□□□□ 0.25
PRKN-206ENST00000366898 GLIPR1L2Q4G1C9 344 aa16.59■□□□□ 0.25
PRKN-206ENST00000366898 CEP162Q5TB80 1403 aa16.57■□□□□ 0.24
PRKN-206ENST00000366898 MIER1Q8N108 512 aa16.52■□□□□ 0.24
PRKN-206ENST00000366898 MYT1LQ9UL68 1186 aa16.52■□□□□ 0.23
PRKN-206ENST00000366898 WRNQ14191 1432 aaPredicted RBP eCLIP16.5■□□□□ 0.23
PRKN-206ENST00000366898 P3H3Q8IVL6 736 aa16.49■□□□□ 0.23
PRKN-206ENST00000366898 CCDC136Q96JN2 1154 aa16.49■□□□□ 0.23
PRKN-206ENST00000366898 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.48■□□□□ 0.23
PRKN-206ENST00000366898 CNGB1Q14028 1251 aaPredicted RBP16.46■□□□□ 0.23
PRKN-206ENST00000366898 RUSC2Q8N2Y8 1516 aa16.45■□□□□ 0.22
PRKN-206ENST00000366898 BAZ1BQ9UIG0 1483 aaKnown RBP16.42■□□□□ 0.22
PRKN-206ENST00000366898 CLIP1P30622 1438 aa16.4■□□□□ 0.22
PRKN-206ENST00000366898 CLSPNQ9HAW4 1339 aa16.4■□□□□ 0.22
PRKN-206ENST00000366898 TNIKQ9UKE5 1360 aa16.4■□□□□ 0.22
PRKN-206ENST00000366898 TOP2AP11388 1531 aaKnown RBP16.39■□□□□ 0.22
PRKN-206ENST00000366898 FAM50AQ14320 339 aaKnown RBP16.39■□□□□ 0.21
PRKN-206ENST00000366898 DEKP35659 375 aaKnown RBP16.39■□□□□ 0.21
PRKN-206ENST00000366898 NPM2Q86SE8 214 aaKnown RBP16.39■□□□□ 0.21
PRKN-206ENST00000366898 UNC13AQ9UPW8 1703 aa16.38■□□□□ 0.21
PRKN-206ENST00000366898 SMARCA4P51532 1647 aa16.38■□□□□ 0.21
PRKN-206ENST00000366898 ANP32AP39687 249 aaKnown RBP16.38■□□□□ 0.21
PRKN-206ENST00000366898 GOLGA3Q08378 1498 aa16.37■□□□□ 0.21
PRKN-206ENST00000366898 BICRAQ9NZM4 1560 aa16.37■□□□□ 0.21
PRKN-206ENST00000366898 SUPT16HQ9Y5B9 1047 aaKnown RBP16.35■□□□□ 0.21
PRKN-206ENST00000366898 TSHZ2Q9NRE2 1034 aa16.31■□□□□ 0.2
PRKN-206ENST00000366898 EEA1Q15075 1411 aa16.3■□□□□ 0.2
PRKN-206ENST00000366898 ANO8Q9HCE9 1232 aaPredicted RBP16.29■□□□□ 0.2
PRKN-206ENST00000366898 SMARCA2P51531 1590 aa16.28■□□□□ 0.2
PRKN-206ENST00000366898 ARID3CA6NKF2 412 aa16.25■□□□□ 0.19
PRKN-206ENST00000366898 IRX6P78412 446 aaPredicted RBP16.24■□□□□ 0.19
PRKN-206ENST00000366898 ZBTB47Q9UFB7 747 aaPredicted RBP16.24■□□□□ 0.19
PRKN-206ENST00000366898 RBM19Q9Y4C8 960 aaKnown RBP16.24■□□□□ 0.19
PRKN-206ENST00000366898 CEP164Q9UPV0 1460 aa16.23■□□□□ 0.19
PRKN-206ENST00000366898 TRIM52Q96A61 297 aa16.22■□□□□ 0.19
PRKN-206ENST00000366898 ATAD2BQ9ULI0 1458 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms