RNA–Protein interactions for RNA: ENST00000366896.5

PRKN-204, Transcript of parkin RBR E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene PRKN, Length 2,514 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKN-204ENST00000366896 NISCHQ9Y2I1 1504 aa31.96■■■□□ 2.71
PRKN-204ENST00000366896 CCDC180Q9P1Z9 1646 aa28.09■■■□□ 2.09
PRKN-204ENST00000366896 ABCC9O60706 1549 aa26.87■■□□□ 1.89
PRKN-204ENST00000366896 ZCCHC6Q5VYS8 1495 aaKnown RBP26.78■■□□□ 1.88
PRKN-204ENST00000366896 DCAF1Q9Y4B6 1507 aa26.45■■□□□ 1.83
PRKN-204ENST00000366896 DCAF8L2P0C7V8 631 aa26.43■■□□□ 1.82
PRKN-204ENST00000366896 MYO15BQ96JP2 1530 aa26.3■■□□□ 1.8
PRKN-204ENST00000366896 NACADO15069 1562 aa26.24■■□□□ 1.79
PRKN-204ENST00000366896 RB1CC1Q8TDY2 1594 aa26.11■■□□□ 1.77
PRKN-204ENST00000366896 SHROOM4Q9ULL8 1493 aa25.74■■□□□ 1.71
PRKN-204ENST00000366896 SCRIBQ14160 1630 aa25.73■■□□□ 1.71
PRKN-204ENST00000366896 UNC13AQ9UPW8 1703 aa25.59■■□□□ 1.69
PRKN-204ENST00000366896 BICRAQ9NZM4 1560 aa25.34■■□□□ 1.65
PRKN-204ENST00000366896 SUPT5HO00267 1087 aaKnown RBP25.24■■□□□ 1.63
PRKN-204ENST00000366896 PABPN1Q86U42 306 aaKnown RBP eCLIP25.23■■□□□ 1.63
PRKN-204ENST00000366896 CECR2Q9BXF3 1484 aa24.85■■□□□ 1.57
PRKN-204ENST00000366896 BAZ1AQ9NRL2 1556 aaPredicted RBP24.71■■□□□ 1.55
PRKN-204ENST00000366896 MROH2BQ7Z745 1585 aa24.67■■□□□ 1.54
PRKN-204ENST00000366896 SMARCA4P51532 1647 aa24.66■■□□□ 1.54
PRKN-204ENST00000366896 RSF1Q96T23 1441 aaPredicted RBP24.62■■□□□ 1.53
PRKN-204ENST00000366896 CHIC1Q5VXU3 224 aa24.6■■□□□ 1.53
PRKN-204ENST00000366896 EIF4G1Q04637 1599 aaKnown RBP24.6■■□□□ 1.53
PRKN-204ENST00000366896 WIZO95785 1651 aa24.45■■□□□ 1.5
PRKN-204ENST00000366896 PEG3Q9GZU2 1588 aa24.4■■□□□ 1.5
PRKN-204ENST00000366896 HRCP23327 699 aa24.38■■□□□ 1.49
PRKN-204ENST00000366896 ATAD2BQ9ULI0 1458 aa24.35■■□□□ 1.49
PRKN-204ENST00000366896 CC2D2AQ9P2K1 1620 aa24.33■■□□□ 1.49
PRKN-204ENST00000366896 SMARCA2P51531 1590 aa24.33■■□□□ 1.49
PRKN-204ENST00000366896 NCAPD3P42695 1498 aa24.22■■□□□ 1.47
PRKN-204ENST00000366896 TOP2AP11388 1531 aaKnown RBP24.2■■□□□ 1.46
PRKN-204ENST00000366896 BAZ1BQ9UIG0 1483 aaKnown RBP24.18■■□□□ 1.46
PRKN-204ENST00000366896 HMGXB3Q12766 1538 aa24.16■■□□□ 1.46
PRKN-204ENST00000366896 DNAJC5BQ9UF47 199 aa24.06■■□□□ 1.44
PRKN-204ENST00000366896 PCGF6Q9BYE7 350 aa23.93■■□□□ 1.42
PRKN-204ENST00000366896 CCDC88BA6NC98 1476 aa23.93■■□□□ 1.42
PRKN-204ENST00000366896 LOC105371045A0A1W2PR82 267 aa23.89■■□□□ 1.41
PRKN-204ENST00000366896 PPARGC1BQ86YN6 1023 aaKnown RBP23.74■■□□□ 1.39
PRKN-204ENST00000366896 CFTRP13569 1480 aa23.56■■□□□ 1.36
PRKN-204ENST00000366896 CADPSQ9ULU8 1353 aa23.55■■□□□ 1.36
PRKN-204ENST00000366896 NESP48681 1621 aa23.47■■□□□ 1.35
PRKN-204ENST00000366896 TRIM41Q8WV44 630 aa23.47■■□□□ 1.35
PRKN-204ENST00000366896 LAMC3Q9Y6N6 1575 aa23.46■■□□□ 1.35
PRKN-204ENST00000366896 PRDM2Q13029 1718 aa23.45■■□□□ 1.35
PRKN-204ENST00000366896 TRIM26Q12899 539 aaPredicted RBP23.45■■□□□ 1.34
PRKN-204ENST00000366896 FAM9AQ8IZU1 332 aaPredicted RBP23.33■■□□□ 1.33
PRKN-204ENST00000366896 FANCD2Q9BXW9 1451 aa23.29■■□□□ 1.32
PRKN-204ENST00000366896 ABCC8Q09428 1581 aa23.28■■□□□ 1.32
PRKN-204ENST00000366896 PDS5BQ9NTI5 1447 aa23.27■■□□□ 1.32
PRKN-204ENST00000366896 KIF21AQ7Z4S6 1674 aa23.21■■□□□ 1.31
PRKN-204ENST00000366896 WRNQ14191 1432 aaPredicted RBP eCLIP23.19■■□□□ 1.3
PRKN-204ENST00000366896 CEP164Q9UPV0 1460 aa23.18■■□□□ 1.3
PRKN-204ENST00000366896 EHMT2Q96KQ7 1210 aa23.16■■□□□ 1.3
PRKN-204ENST00000366896 PELP1Q8IZL8 1130 aaKnown RBP23.15■■□□□ 1.3
PRKN-204ENST00000366896 SYNJ1O43426 1573 aa23.12■■□□□ 1.29
PRKN-204ENST00000366896 ZEB1P37275 1124 aaPredicted RBP23.11■■□□□ 1.29
PRKN-204ENST00000366896 CUX1P39880 1505 aa23.1■■□□□ 1.29
PRKN-204ENST00000366896 ERCC6Q03468 1493 aa23.07■■□□□ 1.28
PRKN-204ENST00000366896 TOP2BQ02880 1626 aa23.07■■□□□ 1.28
PRKN-204ENST00000366896 BIVM-ERCC5R4GMW8 1640 aa23.06■■□□□ 1.28
PRKN-204ENST00000366896 URB2Q14146 1524 aaKnown RBP23.03■■□□□ 1.28
PRKN-204ENST00000366896 DNMBPQ6XZF7 1577 aa23.03■■□□□ 1.28
PRKN-204ENST00000366896 MRC2Q9UBG0 1479 aa23.01■■□□□ 1.27
PRKN-204ENST00000366896 TOPBP1Q92547 1522 aa23■■□□□ 1.27
PRKN-204ENST00000366896 THOC2Q8NI27 1593 aaKnown RBP22.95■■□□□ 1.26
PRKN-204ENST00000366896 WDR62O43379 1518 aa22.92■■□□□ 1.26
PRKN-204ENST00000366896 FGD5Q6ZNL6 1462 aa22.9■■□□□ 1.26
PRKN-204ENST00000366896 POLA1P09884 1462 aaPredicted RBP22.86■■□□□ 1.25
PRKN-204ENST00000366896 SCAF1Q9H7N4 1312 aaKnown RBP22.84■■□□□ 1.25
PRKN-204ENST00000366896 RAD54L2Q9Y4B4 1467 aa22.77■■□□□ 1.24
PRKN-204ENST00000366896 SOGA1O94964 1423 aa22.76■■□□□ 1.23
PRKN-204ENST00000366896 CUX2O14529 1486 aa22.75■■□□□ 1.23
PRKN-204ENST00000366896 TARBP1Q13395 1621 aaKnown RBP22.71■■□□□ 1.23
PRKN-204ENST00000366896 RUSC2Q8N2Y8 1516 aa22.7■■□□□ 1.23
PRKN-204ENST00000366896 ABCA10Q8WWZ4 1543 aa22.7■■□□□ 1.22
PRKN-204ENST00000366896 WDR97A6NE52 1622 aa22.69■■□□□ 1.22
PRKN-204ENST00000366896 EEA1Q15075 1411 aa22.68■■□□□ 1.22
PRKN-204ENST00000366896 IFT140Q96RY7 1462 aa22.66■■□□□ 1.22
PRKN-204ENST00000366896 KIF27Q86VH2 1401 aa22.64■■□□□ 1.21
PRKN-204ENST00000366896 TNIKQ9UKE5 1360 aa22.57■■□□□ 1.2
PRKN-204ENST00000366896 ABCA5Q8WWZ7 1642 aa22.57■■□□□ 1.2
PRKN-204ENST00000366896 TDRD9Q8NDG6 1382 aaKnown RBP22.56■■□□□ 1.2
PRKN-204ENST00000366896 ZNF608Q9ULD9 1512 aaPredicted RBP22.54■■□□□ 1.2
PRKN-204ENST00000366896 CEP162Q5TB80 1403 aa22.54■■□□□ 1.2
PRKN-204ENST00000366896 CSRNP3Q8WYN3 585 aa22.54■■□□□ 1.2
PRKN-204ENST00000366896 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.52■■□□□ 1.19
PRKN-204ENST00000366896 GAPVD1Q14C86 1478 aa22.51■■□□□ 1.19
PRKN-204ENST00000366896 AQRO60306 1485 aaKnown RBP eCLIP22.5■■□□□ 1.19
PRKN-204ENST00000366896 EIF4G3O43432 1585 aaKnown RBP22.48■■□□□ 1.19
PRKN-204ENST00000366896 IGF1RP08069 1367 aa22.47■■□□□ 1.19
PRKN-204ENST00000366896 TTBK1Q5TCY1 1321 aaPredicted RBP22.45■■□□□ 1.18
PRKN-204ENST00000366896 PBRM1Q86U86 1689 aa22.44■■□□□ 1.18
PRKN-204ENST00000366896 ERICH3Q5RHP9 1530 aa22.43■■□□□ 1.18
PRKN-204ENST00000366896 CCER1Q8TC90 406 aaPredicted RBP22.42■■□□□ 1.18
PRKN-204ENST00000366896 ACIN1Q9UKV3 1341 aaKnown RBP22.42■■□□□ 1.18
PRKN-204ENST00000366896 GRIN2BQ13224 1484 aa22.4■■□□□ 1.18
PRKN-204ENST00000366896 GOLGA3Q08378 1498 aa22.4■■□□□ 1.18
PRKN-204ENST00000366896 PRXQ9BXM0 1461 aa22.4■■□□□ 1.18
PRKN-204ENST00000366896 KIF21BO75037 1637 aa22.39■■□□□ 1.18
PRKN-204ENST00000366896 CUL7Q14999 1698 aa22.37■■□□□ 1.17
PRKN-204ENST00000366896 CARMIL1Q5VZK9 1371 aa22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms