RNA–Protein interactions for RNA: ENST00000366896.5

PRKN-204, Transcript of parkin RBR E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene PRKN, Length 2,514 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKN-204ENST00000366896 NISCHQ9Y2I1 1504 aa31.96■■■□□ 2.71
PRKN-204ENST00000366896 CCDC180Q9P1Z9 1646 aa28.09■■■□□ 2.09
PRKN-204ENST00000366896 ABCC9O60706 1549 aa26.87■■□□□ 1.89
PRKN-204ENST00000366896 ZCCHC6Q5VYS8 1495 aaKnown RBP26.78■■□□□ 1.88
PRKN-204ENST00000366896 DCAF1Q9Y4B6 1507 aa26.45■■□□□ 1.83
PRKN-204ENST00000366896 DCAF8L2P0C7V8 631 aa26.43■■□□□ 1.82
PRKN-204ENST00000366896 MYO15BQ96JP2 1530 aa26.3■■□□□ 1.8
PRKN-204ENST00000366896 NACADO15069 1562 aa26.24■■□□□ 1.79
PRKN-204ENST00000366896 RB1CC1Q8TDY2 1594 aa26.11■■□□□ 1.77
PRKN-204ENST00000366896 SHROOM4Q9ULL8 1493 aa25.74■■□□□ 1.71
PRKN-204ENST00000366896 SCRIBQ14160 1630 aa25.73■■□□□ 1.71
PRKN-204ENST00000366896 UNC13AQ9UPW8 1703 aa25.59■■□□□ 1.69
PRKN-204ENST00000366896 BICRAQ9NZM4 1560 aa25.34■■□□□ 1.65
PRKN-204ENST00000366896 SUPT5HO00267 1087 aaKnown RBP25.24■■□□□ 1.63
PRKN-204ENST00000366896 PABPN1Q86U42 306 aaKnown RBP eCLIP25.23■■□□□ 1.63
PRKN-204ENST00000366896 CECR2Q9BXF3 1484 aa24.85■■□□□ 1.57
PRKN-204ENST00000366896 BAZ1AQ9NRL2 1556 aaPredicted RBP24.71■■□□□ 1.55
PRKN-204ENST00000366896 MROH2BQ7Z745 1585 aa24.67■■□□□ 1.54
PRKN-204ENST00000366896 SMARCA4P51532 1647 aa24.66■■□□□ 1.54
PRKN-204ENST00000366896 RSF1Q96T23 1441 aaPredicted RBP24.62■■□□□ 1.53
PRKN-204ENST00000366896 CHIC1Q5VXU3 224 aa24.6■■□□□ 1.53
PRKN-204ENST00000366896 EIF4G1Q04637 1599 aaKnown RBP24.6■■□□□ 1.53
PRKN-204ENST00000366896 WIZO95785 1651 aa24.45■■□□□ 1.5
PRKN-204ENST00000366896 PEG3Q9GZU2 1588 aa24.4■■□□□ 1.5
PRKN-204ENST00000366896 HRCP23327 699 aa24.38■■□□□ 1.49
PRKN-204ENST00000366896 ATAD2BQ9ULI0 1458 aa24.35■■□□□ 1.49
PRKN-204ENST00000366896 CC2D2AQ9P2K1 1620 aa24.33■■□□□ 1.49
PRKN-204ENST00000366896 SMARCA2P51531 1590 aa24.33■■□□□ 1.49
PRKN-204ENST00000366896 NCAPD3P42695 1498 aa24.22■■□□□ 1.47
PRKN-204ENST00000366896 TOP2AP11388 1531 aaKnown RBP24.2■■□□□ 1.46
PRKN-204ENST00000366896 BAZ1BQ9UIG0 1483 aaKnown RBP24.18■■□□□ 1.46
PRKN-204ENST00000366896 HMGXB3Q12766 1538 aa24.16■■□□□ 1.46
PRKN-204ENST00000366896 DNAJC5BQ9UF47 199 aa24.06■■□□□ 1.44
PRKN-204ENST00000366896 PCGF6Q9BYE7 350 aa23.93■■□□□ 1.42
PRKN-204ENST00000366896 CCDC88BA6NC98 1476 aa23.93■■□□□ 1.42
PRKN-204ENST00000366896 LOC105371045A0A1W2PR82 267 aa23.89■■□□□ 1.41
PRKN-204ENST00000366896 PPARGC1BQ86YN6 1023 aaKnown RBP23.74■■□□□ 1.39
PRKN-204ENST00000366896 CFTRP13569 1480 aa23.56■■□□□ 1.36
PRKN-204ENST00000366896 CADPSQ9ULU8 1353 aa23.55■■□□□ 1.36
PRKN-204ENST00000366896 NESP48681 1621 aa23.47■■□□□ 1.35
PRKN-204ENST00000366896 TRIM41Q8WV44 630 aa23.47■■□□□ 1.35
PRKN-204ENST00000366896 LAMC3Q9Y6N6 1575 aa23.46■■□□□ 1.35
PRKN-204ENST00000366896 PRDM2Q13029 1718 aa23.45■■□□□ 1.35
PRKN-204ENST00000366896 TRIM26Q12899 539 aaPredicted RBP23.45■■□□□ 1.34
PRKN-204ENST00000366896 FAM9AQ8IZU1 332 aaPredicted RBP23.33■■□□□ 1.33
PRKN-204ENST00000366896 FANCD2Q9BXW9 1451 aa23.29■■□□□ 1.32
PRKN-204ENST00000366896 ABCC8Q09428 1581 aa23.28■■□□□ 1.32
PRKN-204ENST00000366896 PDS5BQ9NTI5 1447 aa23.27■■□□□ 1.32
PRKN-204ENST00000366896 KIF21AQ7Z4S6 1674 aa23.21■■□□□ 1.31
PRKN-204ENST00000366896 WRNQ14191 1432 aaPredicted RBP eCLIP23.19■■□□□ 1.3
PRKN-204ENST00000366896 CEP164Q9UPV0 1460 aa23.18■■□□□ 1.3
PRKN-204ENST00000366896 EHMT2Q96KQ7 1210 aa23.16■■□□□ 1.3
PRKN-204ENST00000366896 PELP1Q8IZL8 1130 aaKnown RBP23.15■■□□□ 1.3
PRKN-204ENST00000366896 SYNJ1O43426 1573 aa23.12■■□□□ 1.29
PRKN-204ENST00000366896 ZEB1P37275 1124 aaPredicted RBP23.11■■□□□ 1.29
PRKN-204ENST00000366896 CUX1P39880 1505 aa23.1■■□□□ 1.29
PRKN-204ENST00000366896 ERCC6Q03468 1493 aa23.07■■□□□ 1.28
PRKN-204ENST00000366896 TOP2BQ02880 1626 aa23.07■■□□□ 1.28
PRKN-204ENST00000366896 BIVM-ERCC5R4GMW8 1640 aa23.06■■□□□ 1.28
PRKN-204ENST00000366896 URB2Q14146 1524 aaKnown RBP23.03■■□□□ 1.28
PRKN-204ENST00000366896 DNMBPQ6XZF7 1577 aa23.03■■□□□ 1.28
PRKN-204ENST00000366896 MRC2Q9UBG0 1479 aa23.01■■□□□ 1.27
PRKN-204ENST00000366896 TOPBP1Q92547 1522 aa23■■□□□ 1.27
PRKN-204ENST00000366896 THOC2Q8NI27 1593 aaKnown RBP22.95■■□□□ 1.26
PRKN-204ENST00000366896 WDR62O43379 1518 aa22.92■■□□□ 1.26
PRKN-204ENST00000366896 FGD5Q6ZNL6 1462 aa22.9■■□□□ 1.26
PRKN-204ENST00000366896 POLA1P09884 1462 aaPredicted RBP22.86■■□□□ 1.25
PRKN-204ENST00000366896 SCAF1Q9H7N4 1312 aaKnown RBP22.84■■□□□ 1.25
PRKN-204ENST00000366896 RAD54L2Q9Y4B4 1467 aa22.77■■□□□ 1.24
PRKN-204ENST00000366896 SOGA1O94964 1423 aa22.76■■□□□ 1.23
PRKN-204ENST00000366896 CUX2O14529 1486 aa22.75■■□□□ 1.23
PRKN-204ENST00000366896 TARBP1Q13395 1621 aaKnown RBP22.71■■□□□ 1.23
PRKN-204ENST00000366896 RUSC2Q8N2Y8 1516 aa22.7■■□□□ 1.23
PRKN-204ENST00000366896 ABCA10Q8WWZ4 1543 aa22.7■■□□□ 1.22
PRKN-204ENST00000366896 WDR97A6NE52 1622 aa22.69■■□□□ 1.22
PRKN-204ENST00000366896 EEA1Q15075 1411 aa22.68■■□□□ 1.22
PRKN-204ENST00000366896 IFT140Q96RY7 1462 aa22.66■■□□□ 1.22
PRKN-204ENST00000366896 KIF27Q86VH2 1401 aa22.64■■□□□ 1.21
PRKN-204ENST00000366896 TNIKQ9UKE5 1360 aa22.57■■□□□ 1.2
PRKN-204ENST00000366896 ABCA5Q8WWZ7 1642 aa22.57■■□□□ 1.2
PRKN-204ENST00000366896 TDRD9Q8NDG6 1382 aaKnown RBP22.56■■□□□ 1.2
PRKN-204ENST00000366896 ZNF608Q9ULD9 1512 aaPredicted RBP22.54■■□□□ 1.2
PRKN-204ENST00000366896 CEP162Q5TB80 1403 aa22.54■■□□□ 1.2
PRKN-204ENST00000366896 CSRNP3Q8WYN3 585 aa22.54■■□□□ 1.2
PRKN-204ENST00000366896 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.52■■□□□ 1.19
PRKN-204ENST00000366896 GAPVD1Q14C86 1478 aa22.51■■□□□ 1.19
PRKN-204ENST00000366896 AQRO60306 1485 aaKnown RBP eCLIP22.5■■□□□ 1.19
PRKN-204ENST00000366896 EIF4G3O43432 1585 aaKnown RBP22.48■■□□□ 1.19
PRKN-204ENST00000366896 IGF1RP08069 1367 aa22.47■■□□□ 1.19
PRKN-204ENST00000366896 TTBK1Q5TCY1 1321 aaPredicted RBP22.45■■□□□ 1.18
PRKN-204ENST00000366896 PBRM1Q86U86 1689 aa22.44■■□□□ 1.18
PRKN-204ENST00000366896 ERICH3Q5RHP9 1530 aa22.43■■□□□ 1.18
PRKN-204ENST00000366896 CCER1Q8TC90 406 aaPredicted RBP22.42■■□□□ 1.18
PRKN-204ENST00000366896 ACIN1Q9UKV3 1341 aaKnown RBP22.42■■□□□ 1.18
PRKN-204ENST00000366896 GRIN2BQ13224 1484 aa22.4■■□□□ 1.18
PRKN-204ENST00000366896 GOLGA3Q08378 1498 aa22.4■■□□□ 1.18
PRKN-204ENST00000366896 PRXQ9BXM0 1461 aa22.4■■□□□ 1.18
PRKN-204ENST00000366896 KIF21BO75037 1637 aa22.39■■□□□ 1.18
PRKN-204ENST00000366896 CUL7Q14999 1698 aa22.37■■□□□ 1.17
PRKN-204ENST00000366896 CARMIL1Q5VZK9 1371 aa22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms