RNA–Protein interactions for RNA: ENST00000356522.4

CD34-202, Transcript of CD34 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD34, Length 2,874 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD34-202ENST00000356522 NISCHQ9Y2I1 1504 aa34.15■■■■□ 3.06
CD34-202ENST00000356522 CCDC180Q9P1Z9 1646 aa29.12■■■□□ 2.25
CD34-202ENST00000356522 SHROOM4Q9ULL8 1493 aa28.99■■■□□ 2.23
CD34-202ENST00000356522 ZCCHC6Q5VYS8 1495 aaKnown RBP28.88■■■□□ 2.21
CD34-202ENST00000356522 SUPT5HO00267 1087 aaKnown RBP28.35■■■□□ 2.13
CD34-202ENST00000356522 DCAF8L2P0C7V8 631 aa28.28■■■□□ 2.12
CD34-202ENST00000356522 DCAF1Q9Y4B6 1507 aa28.03■■■□□ 2.08
CD34-202ENST00000356522 CHIC1Q5VXU3 224 aa27.53■■■□□ 2
CD34-202ENST00000356522 MYO15BQ96JP2 1530 aa27.43■■□□□ 1.98
CD34-202ENST00000356522 HRCP23327 699 aa27.35■■□□□ 1.97
CD34-202ENST00000356522 SCRIBQ14160 1630 aa27.26■■□□□ 1.95
CD34-202ENST00000356522 ABCC9O60706 1549 aa27.23■■□□□ 1.95
CD34-202ENST00000356522 RSF1Q96T23 1441 aaPredicted RBP26.97■■□□□ 1.91
CD34-202ENST00000356522 NACADO15069 1562 aa26.93■■□□□ 1.9
CD34-202ENST00000356522 PCGF6Q9BYE7 350 aa26.8■■□□□ 1.88
CD34-202ENST00000356522 PPARGC1BQ86YN6 1023 aaKnown RBP26.78■■□□□ 1.88
CD34-202ENST00000356522 LOC105371045A0A1W2PR82 267 aa26.7■■□□□ 1.86
CD34-202ENST00000356522 RB1CC1Q8TDY2 1594 aa26.7■■□□□ 1.86
CD34-202ENST00000356522 CECR2Q9BXF3 1484 aa26.65■■□□□ 1.86
CD34-202ENST00000356522 MROH2BQ7Z745 1585 aa26.55■■□□□ 1.84
CD34-202ENST00000356522 PELP1Q8IZL8 1130 aaKnown RBP26.44■■□□□ 1.82
CD34-202ENST00000356522 TRIM41Q8WV44 630 aa26.42■■□□□ 1.82
CD34-202ENST00000356522 WIZO95785 1651 aa26.41■■□□□ 1.82
CD34-202ENST00000356522 BAZ1AQ9NRL2 1556 aaPredicted RBP26.24■■□□□ 1.79
CD34-202ENST00000356522 FAM9AQ8IZU1 332 aaPredicted RBP26.2■■□□□ 1.78
CD34-202ENST00000356522 UNC13AQ9UPW8 1703 aa26.17■■□□□ 1.78
CD34-202ENST00000356522 SMARCA4P51532 1647 aa26.05■■□□□ 1.76
CD34-202ENST00000356522 TRIM26Q12899 539 aaPredicted RBP26.05■■□□□ 1.76
CD34-202ENST00000356522 EIF4G1Q04637 1599 aaKnown RBP26.02■■□□□ 1.76
CD34-202ENST00000356522 TOP2AP11388 1531 aaKnown RBP25.99■■□□□ 1.75
CD34-202ENST00000356522 EHMT2Q96KQ7 1210 aa25.97■■□□□ 1.75
CD34-202ENST00000356522 SCAF1Q9H7N4 1312 aaKnown RBP25.89■■□□□ 1.74
CD34-202ENST00000356522 CCDC88BA6NC98 1476 aa25.86■■□□□ 1.73
CD34-202ENST00000356522 SMARCA2P51531 1590 aa25.85■■□□□ 1.73
CD34-202ENST00000356522 BICRAQ9NZM4 1560 aa25.83■■□□□ 1.73
CD34-202ENST00000356522 PABPN1Q86U42 306 aaKnown RBP eCLIP25.82■■□□□ 1.72
CD34-202ENST00000356522 ABCC8Q09428 1581 aa25.77■■□□□ 1.72
CD34-202ENST00000356522 ZEB1P37275 1124 aaPredicted RBP25.72■■□□□ 1.71
CD34-202ENST00000356522 PEG3Q9GZU2 1588 aa25.56■■□□□ 1.68
CD34-202ENST00000356522 SOGA1O94964 1423 aa25.49■■□□□ 1.67
CD34-202ENST00000356522 MYT1Q01538 1121 aa25.41■■□□□ 1.66
CD34-202ENST00000356522 ATAD2BQ9ULI0 1458 aa25.4■■□□□ 1.66
CD34-202ENST00000356522 RUSC2Q8N2Y8 1516 aa25.38■■□□□ 1.65
CD34-202ENST00000356522 WRNQ14191 1432 aaPredicted RBP eCLIP25.33■■□□□ 1.65
CD34-202ENST00000356522 EEA1Q15075 1411 aa25.32■■□□□ 1.64
CD34-202ENST00000356522 BAZ1BQ9UIG0 1483 aaKnown RBP25.32■■□□□ 1.64
CD34-202ENST00000356522 CEP162Q5TB80 1403 aa25.31■■□□□ 1.64
CD34-202ENST00000356522 CSRNP3Q8WYN3 585 aa25.3■■□□□ 1.64
CD34-202ENST00000356522 TNIKQ9UKE5 1360 aa25.27■■□□□ 1.64
CD34-202ENST00000356522 ACIN1Q9UKV3 1341 aaKnown RBP25.26■■□□□ 1.63
CD34-202ENST00000356522 SYNJ1O43426 1573 aa25.25■■□□□ 1.63
CD34-202ENST00000356522 NEUROD1Q13562 356 aa25.19■■□□□ 1.62
CD34-202ENST00000356522 UBTFP17480 764 aaKnown RBP25.18■■□□□ 1.62
CD34-202ENST00000356522 GOLGA3Q08378 1498 aa25.16■■□□□ 1.62
CD34-202ENST00000356522 TTBK1Q5TCY1 1321 aaPredicted RBP25.11■■□□□ 1.61
CD34-202ENST00000356522 GTF3C3Q9Y5Q9 886 aa25.07■■□□□ 1.6
CD34-202ENST00000356522 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.05■■□□□ 1.6
CD34-202ENST00000356522 CEP164Q9UPV0 1460 aa25.02■■□□□ 1.6
CD34-202ENST00000356522 KIF21BO75037 1637 aa25.02■■□□□ 1.6
CD34-202ENST00000356522 CCER1Q8TC90 406 aaPredicted RBP24.95■■□□□ 1.59
CD34-202ENST00000356522 CENPBP07199 599 aaPredicted RBP24.95■■□□□ 1.58
CD34-202ENST00000356522 TOP2BQ02880 1626 aa24.94■■□□□ 1.58
CD34-202ENST00000356522 HMGXB3Q12766 1538 aa24.92■■□□□ 1.58
CD34-202ENST00000356522 NCAPD3P42695 1498 aa24.92■■□□□ 1.58
CD34-202ENST00000356522 RAPGEF2Q9Y4G8 1499 aa24.88■■□□□ 1.57
CD34-202ENST00000356522 BIVM-ERCC5R4GMW8 1640 aa24.86■■□□□ 1.57
CD34-202ENST00000356522 CLIP1P30622 1438 aa24.86■■□□□ 1.57
CD34-202ENST00000356522 DIEXFQ68CQ4 756 aaKnown RBP24.83■■□□□ 1.56
CD34-202ENST00000356522 VPS8Q8N3P4 1428 aa24.74■■□□□ 1.55
CD34-202ENST00000356522 CUX1P39880 1505 aa24.73■■□□□ 1.55
CD34-202ENST00000356522 RANGAP1P46060 587 aaPredicted RBP24.71■■□□□ 1.55
CD34-202ENST00000356522 CFTRP13569 1480 aa24.69■■□□□ 1.54
CD34-202ENST00000356522 PRXQ9BXM0 1461 aa24.65■■□□□ 1.54
CD34-202ENST00000356522 ERICH3Q5RHP9 1530 aa24.63■■□□□ 1.53
CD34-202ENST00000356522 APLP2Q06481 763 aa24.57■■□□□ 1.52
CD34-202ENST00000356522 KIF27Q86VH2 1401 aa24.55■■□□□ 1.52
CD34-202ENST00000356522 HNRNPUL2Q1KMD3 747 aaKnown RBP24.55■■□□□ 1.52
CD34-202ENST00000356522 PRDM2Q13029 1718 aa24.52■■□□□ 1.52
CD34-202ENST00000356522 ARAP1Q96P48 1450 aa24.5■■□□□ 1.51
CD34-202ENST00000356522 YTHDC1Q96MU7 727 aaKnown RBP24.43■■□□□ 1.5
CD34-202ENST00000356522 CADPSQ9ULU8 1353 aa24.42■■□□□ 1.5
CD34-202ENST00000356522 CC2D2AQ9P2K1 1620 aa24.37■■□□□ 1.49
CD34-202ENST00000356522 CUX2O14529 1486 aa24.35■■□□□ 1.49
CD34-202ENST00000356522 ZNF316A6NFI3 1004 aaPredicted RBP24.33■■□□□ 1.49
CD34-202ENST00000356522 KANK4Q5T7N3 995 aaPredicted RBP24.33■■□□□ 1.49
CD34-202ENST00000356522 ARHGAP35Q9NRY4 1499 aa24.31■■□□□ 1.48
CD34-202ENST00000356522 IGF1RP08069 1367 aa24.3■■□□□ 1.48
CD34-202ENST00000356522 FGD5Q6ZNL6 1462 aa24.3■■□□□ 1.48
CD34-202ENST00000356522 FANCD2Q9BXW9 1451 aa24.2■■□□□ 1.46
CD34-202ENST00000356522 CARMIL1Q5VZK9 1371 aa24.19■■□□□ 1.46
CD34-202ENST00000356522 MIER1Q8N108 512 aa24.18■■□□□ 1.46
CD34-202ENST00000356522 RRBP1Q9P2E9 1410 aaKnown RBP24.15■■□□□ 1.46
CD34-202ENST00000356522 NESP48681 1621 aa24.08■■□□□ 1.45
CD34-202ENST00000356522 DHX57Q6P158 1386 aaKnown RBP24.08■■□□□ 1.45
CD34-202ENST00000356522 DNMBPQ6XZF7 1577 aa24.08■■□□□ 1.45
CD34-202ENST00000356522 RAD54L2Q9Y4B4 1467 aa24.07■■□□□ 1.44
CD34-202ENST00000356522 CCNB3Q8WWL7 1395 aa24.05■■□□□ 1.44
CD34-202ENST00000356522 TOPBP1Q92547 1522 aa24.04■■□□□ 1.44
CD34-202ENST00000356522 POLA1P09884 1462 aaPredicted RBP24.03■■□□□ 1.44
CD34-202ENST00000356522 TIAM1Q13009 1591 aa24.02■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms