RNA–Protein interactions for RNA: ENST00000355560.4

CLK2-201, Transcript of CDC like kinase 2, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene CLK2, Length 2,120 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK2-201ENST00000355560 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP20.28■□□□□ 0.841e-31■■■□□ 19
CLK2-201ENST00000355560 DDX51Q8N8A6 666 aaKnown RBP eCLIP25.58■■□□□ 1.694e-23■□□□□ 11.3
CLK2-201ENST00000355560 PUM2Q8TB72 1066 aaKnown RBP eCLIP24.62■■□□□ 1.531e-16■■■■■ 49.4
CLK2-201ENST00000355560 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP37.51■■■■□ 3.597e-15■■□□□ 14.1
CLK2-201ENST00000355560 PABPC4Q13310 644 aaKnown RBP eCLIP28.62■■■□□ 2.171e-13■■■□□ 14.8
CLK2-201ENST00000355560 RBFOX2O43251 390 aaKnown RBP eCLIP21.09■□□□□ 0.974e-12■■□□□ 12.7
CLK2-201ENST00000355560 RBM15Q96T37 977 aaKnown RBP eCLIP26.68■■□□□ 1.865e-11■□□□□ 9.9
CLK2-201ENST00000355560 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP24.97■■□□□ 1.591e-9■■■■□ 20.5
CLK2-201ENST00000355560 BUD13Q9BRD0 619 aaKnown RBP eCLIP27.39■■□□□ 1.982e-9■■■□□ 15.1
CLK2-201ENST00000355560 PPIGQ13427 754 aaKnown RBP eCLIP26.13■■□□□ 1.773e-9■■■□□ 15.7
CLK2-201ENST00000355560 SF3B1O75533 1304 aaKnown RBP eCLIP26.6■■□□□ 1.854e-9■■■■□ 26.7
CLK2-201ENST00000355560 FXR2P51116 673 aaKnown RBP eCLIP28.99■■■□□ 2.235e-9■□□□□ 10
CLK2-201ENST00000355560 PRPF4O43172 522 aaKnown RBP eCLIP26.24■■□□□ 1.797e-9■■■■■ 57.2
CLK2-201ENST00000355560 NCBP2P52298 156 aaKnown RBP eCLIP24.32■■□□□ 1.487e-9■■■□□ 18.5
CLK2-201ENST00000355560 SF3B4Q15427 424 aaKnown RBP eCLIP22.15■■□□□ 1.142e-8■■■■■ 51.2
CLK2-201ENST00000355560 DDX3XO00571 662 aaKnown RBP eCLIP27.79■■■□□ 2.042e-8■□□□□ 9
CLK2-201ENST00000355560 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP26.63■■□□□ 1.854e-8■■■□□ 17.8
CLK2-201ENST00000355560 EFTUD2Q15029 972 aaKnown RBP eCLIP26.41■■□□□ 1.825e-8■■■□□ 15.3
CLK2-201ENST00000355560 ZRANB2O95218 330 aaKnown RBP eCLIP27.43■■□□□ 1.985e-8■□□□□ 10.2
CLK2-201ENST00000355560 UTP3Q9NQZ2 479 aaKnown RBP eCLIP27.82■■■□□ 2.047e-8■■■■■ 80.3
CLK2-201ENST00000355560 PCBP2Q15366 365 aaKnown RBP eCLIP25.27■■□□□ 1.648e-8■■■□□ 17.3
CLK2-201ENST00000355560 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP27.09■■□□□ 1.938e-8■■■□□ 17.7
CLK2-201ENST00000355560 XRCC6P12956 609 aaKnown RBP eCLIP29.93■■■□□ 2.381e-7■■■■■ 61.2
CLK2-201ENST00000355560 GTF2F1P35269 517 aaKnown RBP eCLIP28.16■■■□□ 2.12e-7■■■■■ 27
CLK2-201ENST00000355560 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP38.4■■■■□ 3.742e-7■□□□□ 8.8
CLK2-201ENST00000355560 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP28.49■■■□□ 2.152e-7■■■□□ 17.8
CLK2-201ENST00000355560 GRWD1Q9BQ67 446 aaKnown RBP eCLIP36.59■■■■□ 3.452e-7■■■□□ 15
CLK2-201ENST00000355560 MTPAPQ9NVV4 582 aaKnown RBP eCLIP26.39■■□□□ 1.823e-7■□□□□ 8.5
CLK2-201ENST00000355560 HNRNPLP14866 589 aaKnown RBP eCLIP25.51■■□□□ 1.674e-7■■□□□ 13
CLK2-201ENST00000355560 HLTFQ14527 1009 aaKnown RBP eCLIP27.12■■□□□ 1.934e-7■□□□□ 8.9
CLK2-201ENST00000355560 PUM1Q14671 1186 aaKnown RBP eCLIP24.13■■□□□ 1.455e-7■■□□□ 13.4
CLK2-201ENST00000355560 AQRO60306 1485 aaKnown RBP eCLIP39.83■■■■□ 3.975e-7■■■■■ 28
CLK2-201ENST00000355560 SMNDC1O75940 238 aaKnown RBP eCLIP24.34■■□□□ 1.495e-7■■■□□ 17.6
CLK2-201ENST00000355560 ZNF622Q969S3 477 aaKnown RBP eCLIP30.07■■■□□ 2.46e-7■■□□□ 13.2
CLK2-201ENST00000355560 DDX55Q8NHQ9 600 aaKnown RBP eCLIP28.72■■■□□ 2.198e-7■■□□□ 14.4
CLK2-201ENST00000355560 DDX6P26196 483 aaKnown RBP eCLIP25.82■■□□□ 1.729e-7■■■□□ 16.3
CLK2-201ENST00000355560 U2AF2P26368 475 aaKnown RBP eCLIP29.74■■■□□ 2.359e-7■■□□□ 13.7
CLK2-201ENST00000355560 DDX24Q9GZR7 859 aaKnown RBP eCLIP30.71■■■□□ 2.519e-7■■■□□ 18.7
CLK2-201ENST00000355560 AARSP49588 968 aaKnown RBP eCLIP27.04■■□□□ 1.921e-6■■■□□ 15
CLK2-201ENST00000355560 SDAD1Q9NVU7 687 aaKnown RBP eCLIP25.43■■□□□ 1.661e-6■□□□□ 9.5
CLK2-201ENST00000355560 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP22.72■■□□□ 1.232e-6■■□□□ 13.2
CLK2-201ENST00000355560 PABPN1Q86U42 306 aaKnown RBP eCLIP44.27■■■■■ 4.682e-6■□□□□ 11.1
CLK2-201ENST00000355560 SF3A3Q12874 501 aaKnown RBP eCLIP26.08■■□□□ 1.773e-6■■■□□ 17.3
CLK2-201ENST00000355560 ZNF800Q2TB10 664 aaPredicted RBP eCLIP23.15■■□□□ 1.33e-6■■■■□ 23.9
CLK2-201ENST00000355560 TBRG4Q969Z0 631 aaKnown RBP eCLIP25.57■■□□□ 1.686e-6■■□□□ 11.6
CLK2-201ENST00000355560 PCBP1Q15365 356 aaKnown RBP eCLIP27.43■■□□□ 1.986e-6■□□□□ 8.7
CLK2-201ENST00000355560 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP23.64■■□□□ 1.376e-6■■■■□ 22.5
CLK2-201ENST00000355560 DDX42Q86XP3 938 aaKnown RBP eCLIP27.11■■□□□ 1.939e-6■□□□□ 9.6
Retrieved 48 of 48 RNA–protein pairs in 8.7 ms