RNA–Protein interactions for RNA: ENST00000354421.7

C11orf54-202, Transcript of chromosome 11 open reading frame 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C11orf54, Length 1,733 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C11orf54-202ENST00000354421 AEBP2Q6ZN18 517 aaPredicted RBP25.18■■□□□ 1.62
C11orf54-202ENST00000354421 CHIC1Q5VXU3 224 aa23.72■■□□□ 1.39
C11orf54-202ENST00000354421 SENP3Q9H4L4 574 aaPredicted RBP21.88■■□□□ 1.09
C11orf54-202ENST00000354421 POTEDQ86YR6 584 aa21.33■■□□□ 1.01
C11orf54-202ENST00000354421 PHF23Q9BUL5 403 aaPredicted RBP21.32■■□□□ 1
C11orf54-202ENST00000354421 FOXD1Q16676 465 aa20.41■□□□□ 0.86
C11orf54-202ENST00000354421 MSH5O43196 834 aa19.76■□□□□ 0.75
C11orf54-202ENST00000354421 PIAS4Q8N2W9 510 aaPredicted RBP18.83■□□□□ 0.6
C11orf54-202ENST00000354421 PLPPR3Q6T4P5 718 aa18.69■□□□□ 0.58
C11orf54-202ENST00000354421 PPP6R1Q9UPN7 881 aa18.34■□□□□ 0.53
C11orf54-202ENST00000354421 ADRA2BP18089 450 aa18.29■□□□□ 0.52
C11orf54-202ENST00000354421 CACNB1Q02641 598 aaPredicted RBP17.69■□□□□ 0.42
C11orf54-202ENST00000354421 DMRT2Q9Y5R5 561 aa17.1■□□□□ 0.33
C11orf54-202ENST00000354421 SCAF1Q9H7N4 1312 aaKnown RBP16.91■□□□□ 0.3
C11orf54-202ENST00000354421 MAPK8IP2Q13387 824 aaPredicted RBP16.84■□□□□ 0.29
C11orf54-202ENST00000354421 RNF39Q9H2S5 420 aa16.65■□□□□ 0.26
C11orf54-202ENST00000354421 POTEHQ6S545 545 aa16.49■□□□□ 0.23
C11orf54-202ENST00000354421 DCAF8L1A6NGE4 600 aa16.45■□□□□ 0.22
C11orf54-202ENST00000354421 C1QBPQ07021 282 aaKnown RBP16.42■□□□□ 0.22
C11orf54-202ENST00000354421 PPP4R3CPQ6ZMV5 832 aa16.31■□□□□ 0.2
C11orf54-202ENST00000354421 HOXD11P31277 338 aaPredicted RBP16.19■□□□□ 0.18
C11orf54-202ENST00000354421 CNKSR2Q8WXI2 1034 aa16.11■□□□□ 0.17
C11orf54-202ENST00000354421 RNF216Q9NWF9 866 aaPredicted RBP16.02■□□□□ 0.16
C11orf54-202ENST00000354421 DNAJC5BQ9UF47 199 aa15.96■□□□□ 0.15
C11orf54-202ENST00000354421 DNAJC5Q9H3Z4 198 aa15.86■□□□□ 0.13
C11orf54-202ENST00000354421 NCBP3Q53F19 620 aaKnown RBP15.71■□□□□ 0.1
C11orf54-202ENST00000354421 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.43■□□□□ 0.06
C11orf54-202ENST00000354421 ABCC9O60706 1549 aa15.42■□□□□ 0.06
C11orf54-202ENST00000354421 NPM3O75607 178 aaKnown RBP15.35■□□□□ 0.05
C11orf54-202ENST00000354421 DSG3P32926 999 aa15.14■□□□□ 0.01
C11orf54-202ENST00000354421 U3KPZ7 1027 aaPredicted RBP15.02□□□□□ -0.01
C11orf54-202ENST00000354421 CAPN15O75808 1086 aa14.96□□□□□ -0.01
C11orf54-202ENST00000354421 SP7Q8TDD2 431 aaPredicted RBP14.88□□□□□ -0.03
C11orf54-202ENST00000354421 SPINK5Q9NQ38 1064 aaPredicted RBP14.84□□□□□ -0.03
C11orf54-202ENST00000354421 NISCHQ9Y2I1 1504 aa14.82□□□□□ -0.04
C11orf54-202ENST00000354421 KCNA4P22459 653 aa14.8□□□□□ -0.04
C11orf54-202ENST00000354421 APLP2Q06481 763 aa14.78□□□□□ -0.04
C11orf54-202ENST00000354421 CHRDL2Q6WN34 429 aa14.71□□□□□ -0.05
C11orf54-202ENST00000354421 SLC4A2P04920 1241 aa14.69□□□□□ -0.06
C11orf54-202ENST00000354421 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.66□□□□□ -0.06
C11orf54-202ENST00000354421 HNRNPUL2Q1KMD3 747 aaKnown RBP14.66□□□□□ -0.06
C11orf54-202ENST00000354421 RBM42Q9BTD8 480 aaKnown RBP14.63□□□□□ -0.07
C11orf54-202ENST00000354421 ZNF219Q9P2Y4 722 aaPredicted RBP14.63□□□□□ -0.07
C11orf54-202ENST00000354421 TRHP20396 242 aaPredicted RBP14.58□□□□□ -0.08
C11orf54-202ENST00000354421 SAMD1Q6SPF0 538 aaPredicted RBP14.52□□□□□ -0.08
C11orf54-202ENST00000354421 ABCB7O75027 752 aa14.47□□□□□ -0.09
C11orf54-202ENST00000354421 TRIM41Q8WV44 630 aa14.44□□□□□ -0.1
C11orf54-202ENST00000354421 MYCNP04198 464 aaPredicted RBP14.29□□□□□ -0.12
C11orf54-202ENST00000354421 HAX1O00165 279 aa14.18□□□□□ -0.14
C11orf54-202ENST00000354421 PABPN1Q86U42 306 aaKnown RBP eCLIP14.15□□□□□ -0.14
C11orf54-202ENST00000354421 POLA2Q14181 598 aa14.12□□□□□ -0.15
C11orf54-202ENST00000354421 PLSCR2Q9NRY7 297 aa14.12□□□□□ -0.15
C11orf54-202ENST00000354421 CECR2Q9BXF3 1484 aa14.09□□□□□ -0.15
C11orf54-202ENST00000354421 PIP4P2Q8N4L2 257 aa14.05□□□□□ -0.16
C11orf54-202ENST00000354421 CUX2O14529 1486 aa14□□□□□ -0.17
C11orf54-202ENST00000354421 RB1CC1Q8TDY2 1594 aa14□□□□□ -0.17
C11orf54-202ENST00000354421 SLC4A1APQ9BWU0 796 aaKnown RBP13.99□□□□□ -0.17
C11orf54-202ENST00000354421 FOXD4L1Q9NU39 408 aa13.98□□□□□ -0.17
C11orf54-202ENST00000354421 AKT1S1Q96B36 256 aa13.96□□□□□ -0.17
C11orf54-202ENST00000354421 ZBTB12Q9Y330 459 aaPredicted RBP13.96□□□□□ -0.17
C11orf54-202ENST00000354421 LHX8Q68G74 356 aa13.94□□□□□ -0.18
C11orf54-202ENST00000354421 ILDR1Q86SU0 546 aaPredicted RBP13.86□□□□□ -0.19
C11orf54-202ENST00000354421 CCDC180Q9P1Z9 1646 aa13.85□□□□□ -0.19
C11orf54-202ENST00000354421 CC2D2AQ9P2K1 1620 aa13.84□□□□□ -0.19
C11orf54-202ENST00000354421 ATF5Q9Y2D1 282 aaPredicted RBP13.82□□□□□ -0.2
C11orf54-202ENST00000354421 FXR2P51116 673 aaKnown RBP eCLIP13.78□□□□□ -0.2
C11orf54-202ENST00000354421 REM2Q8IYK8 340 aaPredicted RBP13.77□□□□□ -0.21
C11orf54-202ENST00000354421 EVX2Q03828 476 aa13.76□□□□□ -0.21
C11orf54-202ENST00000354421 OSCARQ8IYS5 282 aa13.67□□□□□ -0.22
C11orf54-202ENST00000354421 ATXN8OSP0DMR3 200 aa13.64□□□□□ -0.23
C11orf54-202ENST00000354421 BICRAQ9NZM4 1560 aa13.63□□□□□ -0.23
C11orf54-202ENST00000354421 PITPNM1O00562 1244 aa13.62□□□□□ -0.23
C11orf54-202ENST00000354421 UNC13AQ9UPW8 1703 aa13.55□□□□□ -0.24
C11orf54-202ENST00000354421 ZBTB22O15209 634 aa13.55□□□□□ -0.24
C11orf54-202ENST00000354421 NACADO15069 1562 aa13.53□□□□□ -0.24
C11orf54-202ENST00000354421 GABBR2O75899 941 aa13.5□□□□□ -0.25
C11orf54-202ENST00000354421 FBLN2P98095 1184 aa13.48□□□□□ -0.25
C11orf54-202ENST00000354421 SPDYE2BA6NHP3 402 aa13.47□□□□□ -0.25
C11orf54-202ENST00000354421 SPDYE6P0CI01 402 aa13.47□□□□□ -0.25
C11orf54-202ENST00000354421 SPDYE2Q495Y8 402 aa13.47□□□□□ -0.25
C11orf54-202ENST00000354421 ERCC6Q03468 1493 aa13.45□□□□□ -0.26
C11orf54-202ENST00000354421 EIF4G1Q04637 1599 aaKnown RBP13.43□□□□□ -0.26
C11orf54-202ENST00000354421 C19orf67A6NJJ6 358 aa13.4□□□□□ -0.26
C11orf54-202ENST00000354421 SHROOM4Q9ULL8 1493 aa13.35□□□□□ -0.27
C11orf54-202ENST00000354421 SPDYE1Q8NFV5 336 aaPredicted RBP13.29□□□□□ -0.28
C11orf54-202ENST00000354421 PRKAR2AP13861 404 aaKnown RBP13.27□□□□□ -0.28
C11orf54-202ENST00000354421 ZNF692Q9BU19 519 aaPredicted RBP13.22□□□□□ -0.29
C11orf54-202ENST00000354421 MKRN4PQ13434 485 aaPredicted RBP13.21□□□□□ -0.3
C11orf54-202ENST00000354421 CLEC11AQ9Y240 323 aa13.21□□□□□ -0.3
C11orf54-202ENST00000354421 SSUH2Q9Y2M2 353 aa13.21□□□□□ -0.3
C11orf54-202ENST00000354421 PCDH10Q9P2E7 1040 aa13.19□□□□□ -0.3
C11orf54-202ENST00000354421 POTEMA6NI47 508 aa13.18□□□□□ -0.3
C11orf54-202ENST00000354421 DCAF8L2P0C7V8 631 aa13.13□□□□□ -0.31
C11orf54-202ENST00000354421 POTEIP0CG38 1075 aa13.13□□□□□ -0.31
C11orf54-202ENST00000354421 POTEGQ6S5H5 508 aa13.1□□□□□ -0.31
C11orf54-202ENST00000354421 SOCS7O14512 581 aa13.05□□□□□ -0.32
C11orf54-202ENST00000354421 CLCN6P51797 869 aa13.05□□□□□ -0.32
C11orf54-202ENST00000354421 RIMBP3CA6NJZ7 1639 aa13.04□□□□□ -0.32
C11orf54-202ENST00000354421 RIMBP3BA6NNM3 1639 aa13.04□□□□□ -0.32
C11orf54-202ENST00000354421 RIMBP3Q9UFD9 1639 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms