RNA–Protein interactions for RNA: ENST00000351808.9

IFT88-202, Transcript of intraflagellar transport 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene IFT88, Length 2,856 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT88-202ENST00000351808 NISCHQ9Y2I1 1504 aa23.43■■□□□ 1.34
IFT88-202ENST00000351808 HRCP23327 699 aa22.67■■□□□ 1.22
IFT88-202ENST00000351808 PELP1Q8IZL8 1130 aaKnown RBP22.54■■□□□ 1.2
IFT88-202ENST00000351808 PPARGC1BQ86YN6 1023 aaKnown RBP22.26■■□□□ 1.15
IFT88-202ENST00000351808 PCGF6Q9BYE7 350 aa22.02■■□□□ 1.12
IFT88-202ENST00000351808 MYT1Q01538 1121 aa21.78■■□□□ 1.08
IFT88-202ENST00000351808 SCAF1Q9H7N4 1312 aaKnown RBP21.76■■□□□ 1.07
IFT88-202ENST00000351808 MYO15BQ96JP2 1530 aa21.53■■□□□ 1.04
IFT88-202ENST00000351808 SUPT5HO00267 1087 aaKnown RBP21.52■■□□□ 1.04
IFT88-202ENST00000351808 SHROOM4Q9ULL8 1493 aa21.38■■□□□ 1.01
IFT88-202ENST00000351808 CHIC1Q5VXU3 224 aa21.3■■□□□ 1
IFT88-202ENST00000351808 DCAF1Q9Y4B6 1507 aa21.12■□□□□ 0.97
IFT88-202ENST00000351808 TRIM26Q12899 539 aaPredicted RBP21.11■□□□□ 0.97
IFT88-202ENST00000351808 ZEB1P37275 1124 aaPredicted RBP21.06■□□□□ 0.96
IFT88-202ENST00000351808 ACIN1Q9UKV3 1341 aaKnown RBP21.04■□□□□ 0.96
IFT88-202ENST00000351808 NEUROD1Q13562 356 aa20.99■□□□□ 0.95
IFT88-202ENST00000351808 LOC105371045A0A1W2PR82 267 aa20.93■□□□□ 0.94
IFT88-202ENST00000351808 GTF3C3Q9Y5Q9 886 aa20.93■□□□□ 0.94
IFT88-202ENST00000351808 CCDC180Q9P1Z9 1646 aa20.92■□□□□ 0.94
IFT88-202ENST00000351808 CENPBP07199 599 aaPredicted RBP20.68■□□□□ 0.9
IFT88-202ENST00000351808 TTBK1Q5TCY1 1321 aaPredicted RBP20.54■□□□□ 0.88
IFT88-202ENST00000351808 BCL11AQ9H165 835 aa20.44■□□□□ 0.86
IFT88-202ENST00000351808 DIEXFQ68CQ4 756 aaKnown RBP20.43■□□□□ 0.86
IFT88-202ENST00000351808 FAM9AQ8IZU1 332 aaPredicted RBP20.29■□□□□ 0.84
IFT88-202ENST00000351808 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.23■□□□□ 0.83
IFT88-202ENST00000351808 YTHDC1Q96MU7 727 aaKnown RBP20.21■□□□□ 0.83
IFT88-202ENST00000351808 CCER1Q8TC90 406 aaPredicted RBP20.18■□□□□ 0.82
IFT88-202ENST00000351808 ANP32EQ9BTT0 268 aa20.11■□□□□ 0.81
IFT88-202ENST00000351808 TRIM41Q8WV44 630 aa20.03■□□□□ 0.8
IFT88-202ENST00000351808 ZCCHC6Q5VYS8 1495 aaKnown RBP20■□□□□ 0.79
IFT88-202ENST00000351808 PRKCSHP14314 528 aaPredicted RBP19.97■□□□□ 0.79
IFT88-202ENST00000351808 CSRNP3Q8WYN3 585 aa19.95■□□□□ 0.78
IFT88-202ENST00000351808 EHMT2Q96KQ7 1210 aa19.92■□□□□ 0.78
IFT88-202ENST00000351808 ZNF316A6NFI3 1004 aaPredicted RBP19.89■□□□□ 0.77
IFT88-202ENST00000351808 MIER1Q8N108 512 aa19.88■□□□□ 0.77
IFT88-202ENST00000351808 TSHZ2Q9NRE2 1034 aa19.84■□□□□ 0.77
IFT88-202ENST00000351808 SUPT16HQ9Y5B9 1047 aaKnown RBP19.77■□□□□ 0.76
IFT88-202ENST00000351808 DCAF8L2P0C7V8 631 aa19.72■□□□□ 0.75
IFT88-202ENST00000351808 CLSPNQ9HAW4 1339 aa19.59■□□□□ 0.73
IFT88-202ENST00000351808 ERICH6Q7L0X2 663 aa19.43■□□□□ 0.7
IFT88-202ENST00000351808 BCANQ96GW7 911 aa19.35■□□□□ 0.69
IFT88-202ENST00000351808 RBM19Q9Y4C8 960 aaKnown RBP19.32■□□□□ 0.68
IFT88-202ENST00000351808 MSH5O43196 834 aa19.22■□□□□ 0.67
IFT88-202ENST00000351808 APLP2Q06481 763 aa19.22■□□□□ 0.67
IFT88-202ENST00000351808 FKBP8Q14318 412 aa19.17■□□□□ 0.66
IFT88-202ENST00000351808 ANO8Q9HCE9 1232 aaPredicted RBP19.16■□□□□ 0.66
IFT88-202ENST00000351808 HNRNPUL2Q1KMD3 747 aaKnown RBP19.12■□□□□ 0.65
IFT88-202ENST00000351808 RSF1Q96T23 1441 aaPredicted RBP19.12■□□□□ 0.65
IFT88-202ENST00000351808 WRNQ14191 1432 aaPredicted RBP eCLIP19.11■□□□□ 0.65
IFT88-202ENST00000351808 RB1CC1Q8TDY2 1594 aa19.11■□□□□ 0.65
IFT88-202ENST00000351808 ABCC9O60706 1549 aa19.08■□□□□ 0.64
IFT88-202ENST00000351808 ITGAEP38570 1179 aa19.05■□□□□ 0.64
IFT88-202ENST00000351808 KCNH8Q96L42 1107 aa19.04■□□□□ 0.64
IFT88-202ENST00000351808 DEKP35659 375 aaKnown RBP19.01■□□□□ 0.63
IFT88-202ENST00000351808 CEP162Q5TB80 1403 aa18.97■□□□□ 0.63
IFT88-202ENST00000351808 NEFLP07196 543 aa18.94■□□□□ 0.62
IFT88-202ENST00000351808 FANCIQ9NVI1 1328 aa18.93■□□□□ 0.62
IFT88-202ENST00000351808 SALL2Q9Y467 1007 aaPredicted RBP18.91■□□□□ 0.62
IFT88-202ENST00000351808 MYT1LQ9UL68 1186 aa18.91■□□□□ 0.62
IFT88-202ENST00000351808 CCDC136Q96JN2 1154 aa18.83■□□□□ 0.6
IFT88-202ENST00000351808 TNIKQ9UKE5 1360 aa18.77■□□□□ 0.6
IFT88-202ENST00000351808 UBTFP17480 764 aaKnown RBP18.74■□□□□ 0.59
IFT88-202ENST00000351808 CDK11AQ9UQ88 783 aaPredicted RBP18.74■□□□□ 0.59
IFT88-202ENST00000351808 ERICH6BQ5W0A0 696 aa18.72■□□□□ 0.59
IFT88-202ENST00000351808 TRIM52Q96A61 297 aa18.71■□□□□ 0.59
IFT88-202ENST00000351808 NBR1Q14596 966 aa18.7■□□□□ 0.58
IFT88-202ENST00000351808 DHX57Q6P158 1386 aaKnown RBP18.68■□□□□ 0.58
IFT88-202ENST00000351808 UBE2Q2Q8WVN8 375 aa18.67■□□□□ 0.58
IFT88-202ENST00000351808 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.64■□□□□ 0.58
IFT88-202ENST00000351808 IL27Q8NEV9 243 aa18.62■□□□□ 0.57
IFT88-202ENST00000351808 RTN4Q9NQC3 1192 aaKnown RBP18.62■□□□□ 0.57
IFT88-202ENST00000351808 DDX10Q13206 875 aaKnown RBP18.6■□□□□ 0.57
IFT88-202ENST00000351808 IRX6P78412 446 aaPredicted RBP18.6■□□□□ 0.57
IFT88-202ENST00000351808 ABCC8Q09428 1581 aa18.58■□□□□ 0.57
IFT88-202ENST00000351808 CCDC88BA6NC98 1476 aa18.58■□□□□ 0.57
IFT88-202ENST00000351808 SOGA1O94964 1423 aa18.58■□□□□ 0.56
IFT88-202ENST00000351808 NOP58Q9Y2X3 529 aaKnown RBP18.55■□□□□ 0.56
IFT88-202ENST00000351808 PAK3O75914 559 aaPredicted RBP18.54■□□□□ 0.56
IFT88-202ENST00000351808 SCRIBQ14160 1630 aa18.51■□□□□ 0.55
IFT88-202ENST00000351808 RUSC2Q8N2Y8 1516 aa18.46■□□□□ 0.55
IFT88-202ENST00000351808 RTL5Q5HYW3 569 aaPredicted RBP18.44■□□□□ 0.54
IFT88-202ENST00000351808 EIF4G1Q04637 1599 aaKnown RBP18.43■□□□□ 0.54
IFT88-202ENST00000351808 CCER2I3L3R5 266 aa18.43■□□□□ 0.54
IFT88-202ENST00000351808 CECR2Q9BXF3 1484 aa18.43■□□□□ 0.54
IFT88-202ENST00000351808 GOLGA3Q08378 1498 aa18.42■□□□□ 0.54
IFT88-202ENST00000351808 PPP1R15AO75807 674 aaPredicted RBP18.41■□□□□ 0.54
IFT88-202ENST00000351808 MROH2BQ7Z745 1585 aa18.4■□□□□ 0.54
IFT88-202ENST00000351808 CLIP1P30622 1438 aa18.4■□□□□ 0.54
IFT88-202ENST00000351808 ANP32CO43423 234 aa18.39■□□□□ 0.53
IFT88-202ENST00000351808 WIZO95785 1651 aa18.37■□□□□ 0.53
IFT88-202ENST00000351808 PPP4R2Q9NY27 417 aa18.37■□□□□ 0.53
IFT88-202ENST00000351808 NACADO15069 1562 aa18.37■□□□□ 0.53
IFT88-202ENST00000351808 VPS8Q8N3P4 1428 aa18.36■□□□□ 0.53
IFT88-202ENST00000351808 EEA1Q15075 1411 aa18.36■□□□□ 0.53
IFT88-202ENST00000351808 HIRIP3Q9BW71 556 aaPredicted RBP18.35■□□□□ 0.53
IFT88-202ENST00000351808 B4GALNT3Q6L9W6 998 aa18.34■□□□□ 0.53
IFT88-202ENST00000351808 EIF5BO60841 1220 aaKnown RBP18.32■□□□□ 0.52
IFT88-202ENST00000351808 HNRNPUQ00839 825 aaKnown RBP eCLIP18.32■□□□□ 0.52
IFT88-202ENST00000351808 RANGAP1P46060 587 aaPredicted RBP18.31■□□□□ 0.52
IFT88-202ENST00000351808 IPO9Q96P70 1041 aaKnown RBP18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms