RNA–Protein interactions for RNA: ENST00000345392.2

VHL-202, Transcript of von Hippel-Lindau tumor suppressor, humanhuman

TSL 1 (best) BASIC

Gene VHL, Length 2,696 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VHL-202ENST00000345392 NISCHQ9Y2I1 1504 aa35.53■■■■□ 3.28
VHL-202ENST00000345392 SHROOM4Q9ULL8 1493 aa30.89■■■□□ 2.54
VHL-202ENST00000345392 SUPT5HO00267 1087 aaKnown RBP30.35■■■□□ 2.45
VHL-202ENST00000345392 CCDC180Q9P1Z9 1646 aa30.3■■■□□ 2.44
VHL-202ENST00000345392 ZCCHC6Q5VYS8 1495 aaKnown RBP30.06■■■□□ 2.4
VHL-202ENST00000345392 DCAF8L2P0C7V8 631 aa29.92■■■□□ 2.38
VHL-202ENST00000345392 HRCP23327 699 aa29.79■■■□□ 2.36
VHL-202ENST00000345392 MYO15BQ96JP2 1530 aa29.71■■■□□ 2.35
VHL-202ENST00000345392 CHIC1Q5VXU3 224 aa29.65■■■□□ 2.34
VHL-202ENST00000345392 PCGF6Q9BYE7 350 aa29.52■■■□□ 2.32
VHL-202ENST00000345392 ABCC9O60706 1549 aa29.51■■■□□ 2.32
VHL-202ENST00000345392 PPARGC1BQ86YN6 1023 aaKnown RBP29.31■■■□□ 2.28
VHL-202ENST00000345392 LOC105371045A0A1W2PR82 267 aa28.98■■■□□ 2.23
VHL-202ENST00000345392 DCAF1Q9Y4B6 1507 aa28.9■■■□□ 2.22
VHL-202ENST00000345392 TRIM26Q12899 539 aaPredicted RBP28.62■■■□□ 2.17
VHL-202ENST00000345392 SCRIBQ14160 1630 aa28.47■■■□□ 2.15
VHL-202ENST00000345392 NACADO15069 1562 aa28.39■■■□□ 2.13
VHL-202ENST00000345392 RB1CC1Q8TDY2 1594 aa28.31■■■□□ 2.12
VHL-202ENST00000345392 RSF1Q96T23 1441 aaPredicted RBP28.26■■■□□ 2.11
VHL-202ENST00000345392 ZEB1P37275 1124 aaPredicted RBP28.16■■■□□ 2.1
VHL-202ENST00000345392 FAM9AQ8IZU1 332 aaPredicted RBP28.09■■■□□ 2.09
VHL-202ENST00000345392 TRIM41Q8WV44 630 aa28.09■■■□□ 2.09
VHL-202ENST00000345392 EHMT2Q96KQ7 1210 aa28.06■■■□□ 2.08
VHL-202ENST00000345392 SCAF1Q9H7N4 1312 aaKnown RBP27.95■■■□□ 2.06
VHL-202ENST00000345392 CECR2Q9BXF3 1484 aa27.91■■■□□ 2.06
VHL-202ENST00000345392 PABPN1Q86U42 306 aaKnown RBP eCLIP27.89■■■□□ 2.06
VHL-202ENST00000345392 PELP1Q8IZL8 1130 aaKnown RBP27.87■■■□□ 2.05
VHL-202ENST00000345392 UNC13AQ9UPW8 1703 aa27.83■■■□□ 2.05
VHL-202ENST00000345392 MROH2BQ7Z745 1585 aa27.76■■■□□ 2.03
VHL-202ENST00000345392 WIZO95785 1651 aa27.64■■■□□ 2.02
VHL-202ENST00000345392 BICRAQ9NZM4 1560 aa27.55■■■□□ 2
VHL-202ENST00000345392 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.54■■■□□ 2
VHL-202ENST00000345392 CCER1Q8TC90 406 aaPredicted RBP27.44■■□□□ 1.98
VHL-202ENST00000345392 ACIN1Q9UKV3 1341 aaKnown RBP27.39■■□□□ 1.98
VHL-202ENST00000345392 NEUROD1Q13562 356 aa27.39■■□□□ 1.97
VHL-202ENST00000345392 BAZ1AQ9NRL2 1556 aaPredicted RBP27.3■■□□□ 1.96
VHL-202ENST00000345392 TTBK1Q5TCY1 1321 aaPredicted RBP27.23■■□□□ 1.95
VHL-202ENST00000345392 DIEXFQ68CQ4 756 aaKnown RBP27.23■■□□□ 1.95
VHL-202ENST00000345392 GTF3C3Q9Y5Q9 886 aa27.18■■□□□ 1.94
VHL-202ENST00000345392 ABCC8Q09428 1581 aa27.18■■□□□ 1.94
VHL-202ENST00000345392 EIF4G1Q04637 1599 aaKnown RBP27.17■■□□□ 1.94
VHL-202ENST00000345392 CENPBP07199 599 aaPredicted RBP27.08■■□□□ 1.93
VHL-202ENST00000345392 CCDC88BA6NC98 1476 aa27.07■■□□□ 1.92
VHL-202ENST00000345392 SMARCA4P51532 1647 aa27.04■■□□□ 1.92
VHL-202ENST00000345392 TOP2AP11388 1531 aaKnown RBP27.04■■□□□ 1.92
VHL-202ENST00000345392 SMARCA2P51531 1590 aa26.96■■□□□ 1.91
VHL-202ENST00000345392 SOGA1O94964 1423 aa26.94■■□□□ 1.9
VHL-202ENST00000345392 WRNQ14191 1432 aaPredicted RBP eCLIP26.86■■□□□ 1.89
VHL-202ENST00000345392 CEP162Q5TB80 1403 aa26.86■■□□□ 1.89
VHL-202ENST00000345392 RUSC2Q8N2Y8 1516 aa26.83■■□□□ 1.89
VHL-202ENST00000345392 ZNF316A6NFI3 1004 aaPredicted RBP26.8■■□□□ 1.88
VHL-202ENST00000345392 YTHDC1Q96MU7 727 aaKnown RBP26.79■■□□□ 1.88
VHL-202ENST00000345392 UBTFP17480 764 aaKnown RBP26.76■■□□□ 1.87
VHL-202ENST00000345392 CSRNP3Q8WYN3 585 aa26.7■■□□□ 1.86
VHL-202ENST00000345392 TNIKQ9UKE5 1360 aa26.7■■□□□ 1.86
VHL-202ENST00000345392 MIER1Q8N108 512 aa26.6■■□□□ 1.85
VHL-202ENST00000345392 MYT1Q01538 1121 aa26.58■■□□□ 1.85
VHL-202ENST00000345392 HNRNPUL2Q1KMD3 747 aaKnown RBP26.57■■□□□ 1.84
VHL-202ENST00000345392 DNAJC5BQ9UF47 199 aa26.54■■□□□ 1.84
VHL-202ENST00000345392 CC2D2AQ9P2K1 1620 aa26.53■■□□□ 1.84
VHL-202ENST00000345392 ATAD2BQ9ULI0 1458 aa26.51■■□□□ 1.83
VHL-202ENST00000345392 RANGAP1P46060 587 aaPredicted RBP26.48■■□□□ 1.83
VHL-202ENST00000345392 EEA1Q15075 1411 aa26.48■■□□□ 1.83
VHL-202ENST00000345392 GOLGA3Q08378 1498 aa26.47■■□□□ 1.83
VHL-202ENST00000345392 SYNJ1O43426 1573 aa26.45■■□□□ 1.82
VHL-202ENST00000345392 BAZ1BQ9UIG0 1483 aaKnown RBP26.37■■□□□ 1.81
VHL-202ENST00000345392 PEG3Q9GZU2 1588 aa26.34■■□□□ 1.81
VHL-202ENST00000345392 CEP164Q9UPV0 1460 aa26.28■■□□□ 1.8
VHL-202ENST00000345392 NCAPD3P42695 1498 aa26.26■■□□□ 1.79
VHL-202ENST00000345392 CLIP1P30622 1438 aa26.26■■□□□ 1.79
VHL-202ENST00000345392 RAPGEF2Q9Y4G8 1499 aa26.22■■□□□ 1.79
VHL-202ENST00000345392 APLP2Q06481 763 aa26.19■■□□□ 1.78
VHL-202ENST00000345392 KIF21BO75037 1637 aa26.18■■□□□ 1.78
VHL-202ENST00000345392 VPS8Q8N3P4 1428 aa26.13■■□□□ 1.77
VHL-202ENST00000345392 HMGXB3Q12766 1538 aa26.12■■□□□ 1.77
VHL-202ENST00000345392 TOP2BQ02880 1626 aa25.97■■□□□ 1.75
VHL-202ENST00000345392 SUPT16HQ9Y5B9 1047 aaKnown RBP25.97■■□□□ 1.75
VHL-202ENST00000345392 DHX57Q6P158 1386 aaKnown RBP25.94■■□□□ 1.74
VHL-202ENST00000345392 CLSPNQ9HAW4 1339 aa25.87■■□□□ 1.73
VHL-202ENST00000345392 KANK4Q5T7N3 995 aaPredicted RBP25.85■■□□□ 1.73
VHL-202ENST00000345392 BIVM-ERCC5R4GMW8 1640 aa25.83■■□□□ 1.73
VHL-202ENST00000345392 ARAP1Q96P48 1450 aa25.8■■□□□ 1.72
VHL-202ENST00000345392 CUX1P39880 1505 aa25.8■■□□□ 1.72
VHL-202ENST00000345392 PRXQ9BXM0 1461 aa25.79■■□□□ 1.72
VHL-202ENST00000345392 NESP48681 1621 aa25.78■■□□□ 1.72
VHL-202ENST00000345392 TSHZ2Q9NRE2 1034 aa25.72■■□□□ 1.71
VHL-202ENST00000345392 ERICH3Q5RHP9 1530 aa25.7■■□□□ 1.71
VHL-202ENST00000345392 KCNH8Q96L42 1107 aa25.7■■□□□ 1.7
VHL-202ENST00000345392 ITGAEP38570 1179 aa25.68■■□□□ 1.7
VHL-202ENST00000345392 KIF27Q86VH2 1401 aa25.66■■□□□ 1.7
VHL-202ENST00000345392 CADPSQ9ULU8 1353 aa25.66■■□□□ 1.7
VHL-202ENST00000345392 CFTRP13569 1480 aa25.6■■□□□ 1.69
VHL-202ENST00000345392 RRBP1Q9P2E9 1410 aaKnown RBP25.59■■□□□ 1.69
VHL-202ENST00000345392 BCANQ96GW7 911 aa25.56■■□□□ 1.68
VHL-202ENST00000345392 ARHGAP35Q9NRY4 1499 aa25.56■■□□□ 1.68
VHL-202ENST00000345392 CCNB3Q8WWL7 1395 aa25.53■■□□□ 1.68
VHL-202ENST00000345392 ANP32EQ9BTT0 268 aa25.5■■□□□ 1.67
VHL-202ENST00000345392 CUX2O14529 1486 aa25.5■■□□□ 1.67
VHL-202ENST00000345392 RAB3GAP2Q9H2M9 1393 aa25.44■■□□□ 1.66
VHL-202ENST00000345392 DDX10Q13206 875 aaKnown RBP25.43■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms